Analysis and modeling of the integrative response of Medicago truncatula to nitrogen constraints

Comptes Rendus Biologies - Tập 332 - Trang 1022-1033 - 2009
Christophe Salon1, Marc Lepetit2, Pascal Gamas3, Christian Jeudy1, Sandra Moreau3, Delphine Moreau1, Anne-Sophie Voisin1, Gérard Duc1, Virginie Bourion1, Nathalie Munier-Jolain1
1INRA ENESAD, UMR 102 génétique et ecophysiologie des légumineuses (UMR LEG), 17, rue Sully, BP 86510, 21065 Dijon cedex, France
2Agro-M/CNRS/INRA/UM2, UMR 5004 biochimie et physiologie moléculaire des plantes (UMR B&PMP), institut de biologie intégrative des plantes (IBIP), place Viala, 34060 Montpellier cedex 1, France
3INRA/CNRS, UMR 441/2594 Laboratoire des interactions plante micro-organismes (LIPM), 31326 Castanet Tolosan, France

Tài liệu tham khảo

Forde, 2001, The nutritional control of root development, Plant and Soil, 232, 51, 10.1023/A:1010329902165 Wang, 2000, Genomic analysis of a nutrient response in Arabidopsis reveals diverse expression patterns and novel metabolic and potential regulatory genes induced by nitrate, Plant Cell, 12, 1491, 10.1105/tpc.12.8.1491 Wang, 2001, Nitrate-induced genes in tomato roots. Array analysis reveals novel genes that may play a role in nitrogen nutrition, Plant Physiol., 127, 345, 10.1104/pp.127.1.345 Wang, 2002, Identification of genes enriched in rice roots of the local nitrate treatment and their expression patterns in split-root treatment, Gene, 297, 93, 10.1016/S0378-1119(02)00870-3 Wang, 2003, Microarray analysis of the nitrate response in Arabidopsis roots and shoots reveals over 1000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism, Plant Physiol., 132, 556, 10.1104/pp.103.021253 Scheible, 2004, Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen, Plant Physiol., 136, 2483, 10.1104/pp.104.047019 Wang, 2004, Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis, Plant Physiol., 136, 2512, 10.1104/pp.104.044610 Gutierrez, 2007, Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis, Genome Biol., 8, R7, 10.1186/gb-2007-8-1-r7 Burns, 1991, Short-term and long-term effects of a change in the spatial distribution of nitrate in the root zone on N uptake, growth and root development of young lettuce plants, Plant Cell Environment, 14, 21, 10.1111/j.1365-3040.1991.tb01368.x Gansel, 2001, Differential regulation of the NO3− and NH4+ transporter genes AtNrt2.1 and AtAmt1.1 in Arabidopsis: Relation with long-distance and local controls by N status of the plant, Plant J., 26, 143, 10.1046/j.1365-313x.2001.01016.x Cooper, 1989, Cycling of amino-nitrogen and other nutrient between shoots and roots in cereals: A possible mechanism integrating shoot and root in the regulation of nutrient uptake, J. Exp. Bot., 40, 753, 10.1093/jxb/40.7.753 Gojon, 1998, Effects of genetic modification of nitrate reductase expression on 15NO3 uptake and reduction in Nicotiana plants, Plant Cell Environment, 21, 43, 10.1046/j.1365-3040.1998.00269.x Lejay, 1999, Molecular and functional regulation of two NO3 uptake systems by N and C status of Arabidopsis plants, Plant J., 18, 509, 10.1046/j.1365-313X.1999.00480.x Müller, 1992, Inhibition of NO3− uptake by various phloem-translocated amino acids in soybean seedlings, J. Exp. Bot., 43, 617, 10.1093/jxb/43.5.617 Krapp, 1998, Expression studies of Nrt2; 1Np, a putative high-affinity nitrate transporter: Evidence for its role in nitrate uptake, Plant J., 14, 723, 10.1046/j.1365-313x.1998.00181.x Zhuo, 1999, Regulation of a putative high-affinity nitrate transporter (Nrt2; 1At) in roots of Arabidopsis thaliana, Plant J., 17, 563, 10.1046/j.1365-313X.1999.00396.x Nazoa, 2003, Regulation of the nitrate transporter gene AtNRT2.1 in Arabidopsis thaliana: Responses to nitrate, amino acids and developmental stage, Plant Mol. Biol., 52, 689, 10.1023/A:1024899808018 Zhang, 1999, Dual pathways for regulation of root branching by nitrate, Proc. Natl. Acad. Sci. USA, 96, 6529, 10.1073/pnas.96.11.6529 Parsons, 1993, Nodule growth and activity may be regulated by a feedback mechanism involving phloem nitrogen, Plant Cell Environ., 16, 125, 10.1111/j.1365-3040.1993.tb00854.x Imsande, 1994, N demand and the regulation of nitrate uptake, Plant Physiol., 105, 3, 10.1104/pp.105.1.3 Lee, 1992, Nitrogen assimilation and the control of ammonium and nitrate absorption by maize roots, J. Exp. Bot., 43, 1385, 10.1093/jxb/43.11.1385 Bacanamwo, 1997, The feedback mechanism of nitrate inhibition of nitrogenase activity in soybean may involve asparagine and/or products of its metabolism, Physiologia Plantarum, 100, 371, 10.1111/j.1399-3054.1997.tb04795.x Neo, 1997, Phloem glutamine and the regulation of O2 diffusion in legume nodules, Plant Physiol., 113, 259, 10.1104/pp.113.1.259 Rawat, 1999, AtAMT1 gene expression and NH4+ uptake in roots of Arabidopsis thaliana: Evidence for regulation by root glutamine levels, Plant J., 19, 143, 10.1046/j.1365-313X.1999.00505.x Hinson, 1975, Nodulation responses from nitrogen applied to soybean half-root systems, Agronomy Journal, 67, 799, 10.2134/agronj1975.00021962006700060018x Krusell, 2002, Shoot control of root development and nodulation is mediated by a receptor-like kinase, Nature, 420, 422, 10.1038/nature01207 Schnabel, 2005, The Medicago truncatula SUNN gene encodes a CLV1-like leucine-rich repeat receptor kinase that regulates nodule number and root length, Plant Mol. Biol., 58, 809, 10.1007/s11103-005-8102-y Caroll, 1990, Nitrate inhibition of nodulation in legumes, 159 Sagan, 1996, Sym28 and Sym29, two new genes involved in regulation of nodulation in pea (Pisum sativum L.), Symbiosis, 20, 229 Wopereis, 2000, Short root mutant of Lotus japonicus with a dramatically altered symbiotic phenotype, Plant J., 23, 97, 10.1046/j.1365-313x.2000.00799.x Duc, 1989, First report of non-mycorrhizal plant mutants (Myc super(-)) obtained in pea (Pisum sativum) L.) and fababean (Vicia faba L.), Plant Science, 60, 215, 10.1016/0168-9452(89)90169-6 Sagan, 1995, Selection of nodulation and mycorrhizal mutants in the model plant Medicago truncatula (Gaertn.) after γ-ray mutagenesis, Plant Science, 111, 63, 10.1016/0168-9452(95)04229-N Catoira, 2000, Four genes of Medicago truncatula controlling components of a nod factor transduction pathway, Plant Cell, 12, 1647, 10.1105/tpc.12.9.1647 Lévy, 2004, A putative Ca2+ and calmodulin-dependent protein kinase required for bacterial and fungal symbioses, Science, 303, 1361, 10.1126/science.1093038 Stacey, 2005, Genetics and functional genomics of legume nodulation, Current Opinion in Plant Biology, 9, 110, 10.1016/j.pbi.2006.01.005 Casson, 2003, Genes and signalling in root development, Tansley Review, New Phytol., 158, 11, 10.1046/j.1469-8137.2003.00705.x Weeden, 2002, Identification of genes affecting root mass and root/shoot ratio in a JI1794 x “Slow” RILL population, Pisum Genetics, 34, 28 McPhee, 2005, Variation for seedling root architecture in the core collection of pea germplasm, Crop Sci., 45, 1758, 10.2135/cropsci2004.0544 Bourion, 2007, Genetic variability in nodulation and root growth affects nitrogen fixation and accumulation in pea, Ann. Bot., 100, 589, 10.1093/aob/mcm147 Laguerre, 2007, Rhizobium leguminosarum bv. Viciae genotypes interact with pea plants in developmental responses of nodules, roots and shoots, New Phytologist, 176, 680, 10.1111/j.1469-8137.2007.02212.x Sidorova, 2002, The Brt and Lrt genes control the development of roots in peas (Pisum sativum L.), Pisum Genetics, 34, 23 de Billy, 2001, Expression studies on AUX1-like genes in Medicago truncatula suggest that auxin is required at two steps in early nodule development, Mol. Plant Microbe Interact., 14, 267, 10.1094/MPMI.2001.14.3.267 Gonzalez-Rizzo, 2006, The Medicago truncatula CRE1 cytokinin receptor regulates lateral root development and early symbiotic interaction with Sinorhizobium melilot, Plant Cell, 18, 2680, 10.1105/tpc.106.043778 Bright, 2005, The LATD gene of Medicago truncatula is required for both nodule and root development, Mol. Plant Microbe Interact., 18, 521, 10.1094/MPMI-18-0521 Liang, 2007, Abscisic acid rescues the root meristem defects of the Medicago truncatula latd mutant, Dev. Biol., 304, 297, 10.1016/j.ydbio.2006.12.037 Penmetsa, 2008, The Medicago truncatula ortholog of Arabidopsis EIN2, sickle, is a negative regulator of symbiotic and pathogenic microbial associations, The Plant Journal, 55, 580, 10.1111/j.1365-313X.2008.03531.x Cook, 1999, Medicago truncatula – a model in the making!, Current Opinion in Plant Biology, 2, 301, 10.1016/S1369-5266(99)80053-3 VandenBosch, 2003, Summaries of legume genomics projects from around the globe. Community resources for crops and models, Plant Physiol., 131, 840, 10.1104/pp.103.020388 Ruffel, 2008, Systemic signaling of the plant N status triggers specific transcriptome responses depending on the N source in Medicago truncatula, Plant Physiol., 146, 2020, 10.1104/pp.107.115667 D. Moreau, Réponse du développement et de la croissance de Medicago truncatula aux facteurs environnementaux : contribution à l'élaboration d'outils de phénotypage pour l'analyse de la variabilité génétique associée à la nutrition azotée, Thèse de doctorat Université de Bourgogne, 2007 Moreau, 2008, The model symbiotic association between Medicago truncatula cv. Jemalong and Rhizobium meliloti strain 2011 leads to N-stressed plants when symbiotic N2 fixation is the main source for plant growth, J. Exp. Bot., 59, 3509, 10.1093/jxb/ern203 Moreau, 2009, Can differences of nitrogen nutrition level among Medicago truncatula genotypes be assessed non-destructively? Probing with a recombinant inbred lines population, Plant Signaling and Behavior, 4, 30, 10.4161/psb.4.1.7223