An overview of physico-chemical mechanisms of biogas production by microbial communities: a step towards sustainable waste management

Aguena M, Spira B (2009) Transcriptional processing of the pst operon of Escherichia coli. Curr Microbiol 58:264–267 Berni M, Dorileo I, Nathia G, Forster-Carneiro T, Lachos D, Santos BGM (2014) Anaerobic digestion and biogas production: combine effluent treatment with energy generation in UASB reactor as biorefinery annex. Int J Chem Eng. doi:10.1155/2014/543529 Bowker RPG (1983) New wastewater treatment for industrial applications. Environ Prog 2:235–242 Buffieare P, Bergeon JP, Moletta R (2000) The inverse turbulent bed: a novel bioreactor for anaerobic treatment. Water Res 34:673–677 Chae KJ, Jang A, Yim SK, Kim IS (2008) The effects of digestion temperature and temperature shock on the biogas yields from the mesophilic anaerobic digestion of swine manure. Bioresour Technol 99:1–6 Chojnacka A, Szczęsny P, Błaszczyk MK, Zielenkiewicz U, Detman A, Salamon A, Sikora A (2015) Noteworthy facts about a methane-producing microbial community processing acidic effluent from sugar beet molasses fermentation. PLoS ONE. doi:10.1371/journal.pone.0128008 Chouari R, Le PD, Daegelen P, Ginestet P, Weissenbach J, Sghir A (2005) Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester. Environ Microbiol 7:1104–1115 Cirne DG, Lehtomaki A, Bjornsson L, Blackhall LL (2007) Hydrolysis and microbial community analysis in two-stage anaerobic digestion of energy crops. J Appl Microbiol 103:516–527 Cram DS, Sherf BA, Libby RT, Mattalianos RJ, Ramachandran KL, Reeve JN (1987) Biochemistry Structure and expression of the genes, mcrBDCGA, which encode the subunits of component C of methyl coenzyme M reductase in Methanococcus vannielii. Proc Natl Acad Sci 84:3992–3996 Darcy TJ, Sandman K, Reeve JN (1995) Methanobacterium formicicum, a mesophilic methanogen, contains three HFo histones. Bacteriol 177:858–860 David LA, Alm EJ (2010) Rapid evolutionary innovation during an Archaean genetic expansion. Nature 469:93–96 Demirel B, Scherer P (2008) The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: a review. Rev Environ Sci Biotechnol 7:173–190 Doi RH (2008) Cellulases of mesophilic microorganisms: cellulosome and noncellulosome producers. Ann NY Acad Sci 1125:267–279 Dupont CL, Yang S, Palenik B, Bourne PE (2006) Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry. Proc Natl Acad Sci 103:17822–17827 Dupont CL, Butcher A, Ruben RE, Bourne PE, Caetano-Anolles G (2010) History of biological metal utilization inferred through phylogenomic analysis of protein structures. Proc Natl Acad Sci 107:10567–10572 Gernhardt P, Possot O, Foglino M, Sibold L, Klein A (1990) Construction of an integration vector for use in the Archaebacterium Methanococcus voltae and expression of a eubacterial resistance gene. Mol Gen Genet 221:273–279 Glass JB, Orphan VJ (2012) Trace metal requirements for microbial enzymes involved in the production and consumption of methane and nitrous oxide. Front Microbiol. doi:10.3389/fmicb.2012.00061 Godon JJ, Zumstein E, Dabert P, Habouzit F, Moletta R (1997) Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl Environ Microbiol 63:2802–2813 Hattori M, Iwase N, Furuya N, Tanaka Y, Tsukazaki T, Ishitani R, Maguire ME, Ito K, Maturana A, Nureki O (2009) Mg2+-dependent gating of bacterial MgtE channel underlies Mg2+ homeostasis. EMBO 28:3602–3612 Heeg K, Pohl M, Mumme J, Klocke M, Nettmann E (2014) Microbial communities involved in biogas production from wheat straw as the sole substrate within a two-phase solid-state anaerobic digestion. Syst Appl Microbiol 37:590–600 Holm-Nielsen JB, Al Seadi T, Oleskowicz-Popiel P (2009) The future of anaerobic digestion and biogas utilization. Bioresour Technol 100:5478–5484 Jeris JS (1983) Industrial wastewater treatment using anaerobic fluidized bed reactors. Water Sci Technol 15:169–176 Kaster AK, Goenrich M, Seedorf H, Liesegang H, Wollherr A, Gottschalk G, Thauer RK (2011) More than 200 genes required for methane formation from H2 and CO2 and energy conservation are present in Methanothermobacter marburgensis and Methanothermobacter thermautotrophicus. Archaea. doi:10.1155/2011/973848 Ke S, Shi Z (2005) Applications of two-phase anaerobic degradation in industrial wastewater treatment. Environ Pollut 23:65–80 Khalid A, Arshad M, Anjum M, Mahmood T, Dawson L (2011) The anaerobic digestion of solid organic waste. Waste Manage 31:1737–1744 Klein A, Allmansberger R, Bokranz M, Knaub S, Müller B, Muth E (1988) Comparative analysis of genes encoding methyl coenzyme M reductase in methanogenic bacteria. Mol Gen Genet 213:409–420 Krzysztof Z, Frac M (2012) Methane fermentation process as anaerobic digestion of biomass: transformations, stages and microorganisms. Afr J Biotechnol 11:4127–4439 Lang K, Schuldes J, Klingl A, Poehlein A, Daniel R, Brune A (2015) New mode of energy metabolism in the seventh order of methanogens as revealed by comparative genome analysis of “Candidatus Methanoplasma termitum”. Appl Environ Microbiol 81:1338–1352 Lee DH, Behera SK, Kim J, Park HS (2009) Methane production potential of leachate generated from Korean food waste recycling facilities: a lab scale study. Waste Manag 29:876–882 Lehmacher A, Klenk HP (1994) Characterization and phylogeny of mcrII, a gene cluster encoding an isoenzyme of methyl coenzyme M reductase from hyperthermophilic Methanothermus fervidus. Mol Gen Genet 243:198–206 Leitch S, Bradley MJ, Rowe JL, Chivers PT, Maroney MJ (2007) Nickel-specific response in the transcriptional regulator, Escherichia coli NikR. J Am Chem Soc 129:5085–5095 Lettinga G (1995) Anaerobic digestion and wastewater treatment systems. Antonie Van Leeuwenhoek 67:3–28 Lettinga G, Van Velsen AFM, Hobma SW, de Zeeuw WJ, Klapwijk A (1980) Use of upflow anaerobic sludge blanket (UASB) reactor concept for biological wastewater treatment especially for anaerobic treatment. Biotechnol Bioeng 22:699–734 Liang Y-L, Zhang Z, Wu M, Wu Y, Feng J-X (2014) Isolation, screening, and identification of cellulolytic bacteria from natural reserves in the subtropical region of China and optimization of cellulase production by Paenibacillus terrae ME27-1. BioMed Res Int. doi:10.1155/2014/512497 Ma J, Van Wambeke M, Carballa M, Verstraete W (2007) Improvement of the anaerobic treatment of potato processing wastewater in a UASB reactor by codigestion with glycerol. Biotechnol Lett 30:861–867 Manariotis ID, Grigoropoulos SG, Hung YT (2010) Anaerobic treatment of low-strength wastewater by a biofilm reactor. In: Wang LK, Tay JH, Tay ST, Hung YT (eds) Handbook of environmental engineering, vol 11. Humana Press, New York. doi:10.1007/978-1-60327-031-1 Marchaim U, Krause C (1993) Propionic to acetic-acid ratios in overloaded anaerobic-digestion. Bioresour Technol 43:195–203 Mathew AK, Bhui I, Banerjee SN, Goswami R, Shome A, Chakraborty AK, Balachandran S, Chaudhury S (2014) Biogas production from locally available aquatic weeds of Santiniketan through anaerobic digestion. Clean Technol Environ Policy. doi:10.1007/s10098-014-0877-6 McInerney MJ, Struchtemeyer CG, Sieber J, Mouttaki H, Stams AJ, Schink B, Rohlin L, Gunsalus RP (2008) Physiology, ecology, phylogeny, and genomics of microorganisms capable of syntrophic metabolism. Ann NY Acad Sci 1125:58–72 Merlino G, Rizzi A, Schievano A, Tenca A, Scaglia B, Oberti R, Adani F, Daffonchio D (2013) Microbial community structure and dynamics in two-stage vs single-stage thermophilic anaerobic digestion of mixed swine slurry and market bio-waste. Water Res 47:1983–1995 Micheletti PA, Sment KA, Konisky J (1991) Isolation of a coenzyme M-axotrophic mutant and transformation by electroporation in Methanococcus voltae. Bacteriol 173:3414–3418 Mumme J, Linke B, Toelle R (2010) Novel upflow anaerobic solid-state (UASS) reactor. Bioresour Technol 101:592–599 Nagamani B, Ramasamy K (1999) Biogas production technology: an Indian perspective. Curr Sci 77:44–55 Narihiro T, Sekiguchi Y (2007) Microbial communities in anaerobic digestion processes for waste and wastewater treatment: a microbiological update. Curr Opin Biotechnol 18:273–278 O'Flahert V, Collins G, Mahony T (2006) The microbiology and biochemistry of anaerobic bioreactors with relevance to domestic sewage treatment. Rev Environ Sci Biotechnol 5:39–55 Qiang H, Langa D-L, Li Y-Y (2012) High-solid mesophilic methane fermentation of food waste with an emphasis on iron, cobalt, and nickel requirements. Bioresour Technol 103:21–27 Rajathi RP (2013) Efficiency of HUASB reactor for treatment of different types of wastewater—a review. Int J Eng Res Technol 2:465–471 Rao AG, Prakash SS, Joseph J, Reddy AR, Sarma PN (2011) Multi stage high rate biomethanation of poultry litter with self mixed anaerobic digester. Bioresour Technol 102:729–735 Sandbeck KA, Leigh JA (1991) Recovery of an integration shuttle vector from tandem repeats in Methanococcus maripaludis. Appl Environ Microbiol 57:2762–2763 Schnurer A, Jarvis A (2010) Microbiological handbook for biogas plants. Swedish Waste Management U2009:03, Swedish Gas Centre Report 207, pp 1–74 Sharma PK, Khan NA, Ayub S (2012) Modelling of COD reduction in a UASB reactor. Glob J Eng Appl Sci 2:178–182 Slonczewski JL, Foster JW (2014) Microbiology: an evolving science, 3rd edn. W.W. Norton and Company, New York Sträuber H, Schröder M, Kleinsteuber S (2012) Metabolic and microbial community dynamics during the hydrolytic and acidogenic fermentation in a leach-bed process. Energy Sustain Soc. doi:10.1186/2192-0567-2-13 Toprak H (1995) Temperature and organic loading dependency of methane and carbon dioxide emission rates of a full-scale anaerobic waste stabilization pond. Water Res 29:1111–1119 Wang CH, Lin PJ, Chang JS (2006) Fermentative conversion of sucrose and pineapple waste into hydrogen gas in phosphate-buffered culture seeded with municipal sewage sludge. Process Biochem 41:1353–1358 Wang SC, Dias AV, Zamble DB (2009) The “metallospecific” response of proteins: a perspective based on the Escherichia coli transcriptional regulator NikR. Dalton Trans 14:2459–2466 Wang Q, Thompson E, Parsons R, Rogers G, Dunn D (2011) Economic feasibility of converting cow manure to electricity: a case study of the CVPS cow power program in Vermont. Dairy Sci 94:4937–4949 Ward AJ, Hobbs PJ, Holliman PJ, Jones DL (2008) Optimization of the anaerobic digestion of agricultural resources. Bioresour Technol 99:7928–7940 Weiland P (2010) Biogas production: current state and perspectives. Appl Microbiol Biotechnol 85:849–860 White WB, Ferry JG (1992) Identification of formate dehydrogenase-specific mRNA species and nucleotide sequence of the fdhC gene of Methanobacterium formicicum. Bacteriol 174:4997–5004 Wirth R, Kovacs E, Maroti G, Bagi Z, Rakhely G, Kovacs KL (2012) Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing. Biotechnol Biofuels. doi:10.1186/1754-6834-5-41 Wu B, Bibeau EL, Gebremedhin KG (2009) Three-dimensional numerical simulation model of biogas production for anaerobic digesters. Can Biosyst Eng 51:8.1–8.7 Xie S, Wu G, Lawlor PG, Frost JP, Zhan X (2012) Methane production from anaerobic co-digestion of the separated solid fraction of pig manure with dried grass silage. Bioresour Technol 104:289–297 Young JC, Mccarty PL (1969) Anaerobic filter for waste treatment. Water Pollut Control Fed 41:160–173 Youngsukkasem S, Akinbomi J, Rakshit SK, Taherzadeh MJ (2013) Biogas production by encased bacteria in synthetic membranes: protective effects in toxic media and high loading rates. Environ Technol 34:2077–2084 Zhang P, Zeng G, Zhang G, Li Y, Zhang B, Fan M (2008) Anaerobic co-digestion of biosolids and organic fraction of municipal solid waste by sequencing batch process. Fuel Process Technol 89:485–489 Zhang Y, Rodionov DA, Gelfand MS, Gladyshev VN (2009) Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization. BMC Genom. doi:10.1186/1471-2164-10-78