An open future for ecological and evolutionary data?
Tóm tắt
As part of BioMed Central’s open science mission, we are pleased to announce that two of our journals have integrated with the open data repository Dryad. Authors submitting their research to either BMC Ecology or BMC Evolutionary Biology will now have the opportunity to deposit their data directly into the Dryad archive and will receive a permanent, citable link to their dataset. Although this does not affect any of our current data deposition policies at these journals, we hope to encourage a more widespread adoption of open data sharing in the fields of ecology and evolutionary biology by facilitating this process for our authors. We also take this opportunity to discuss some of the wider issues that may concern researchers when making their data openly available. Although we offer a number of positive examples from different fields of biology, we also recognise that reticence to data sharing still exists, and that change must be driven from within research communities in order to create future science that is fit for purpose in the digital age. This editorial was published jointly in both BMC Ecology and BMC Evolutionary Biology.
Tài liệu tham khảo
Dryad Integrated Journals List.http://datadryad.org/pages/integratedJournals,
DataCite: Why Cite Data?.http://www.datacite.org/whycitedata,
PLoS Data Sharing Policy.http://www.plosone.org/static/policies#sharing,
Bloom T, Ganley E, Winker M: Data access for the open access literature: PLOS’s data policy. PLoS Biol. 2014, 12 (2): e1001797-10.1371/journal.pbio.1001797. doi:10.1371/journal.pbio.1001797
BioMed Central Editorial Policies: Supporting Data.http://www.biomedcentral.com/about/supportingdata,
Poisot TE, Mounce R, Gravel D: Moving toward a sustainable ecological science: don’t let data go to waste!. Ideas Ecol Evol. 2013, 6 (2): 11-19.http://library.queensu.ca/ojs/index.php/IEE/article/view/4632,
My concerns about PLOS’s new open data policy.http://emckiernan.wordpress.com/2014/02/26/my-concerns-about-ploss-new-open-data-policy/,
Myers N, Mittermeier RA, Mittermeier CG, da Fonseca GAB, Kent J: Biodiversity hotspots for conservation priorities. Nature. 403: 853-858.http://www.nature.com/nature/journal/v403/n6772/abs/403853a0.html,
WMA Declaration of Helsinki - Ethical Principles for Medical Research Involving Human Subjects.http://www.wma.net/en/30publications/10policies/b3/,
Drew AJ, Buxman CL, Holmes DD, Mandecki DL, Mungkaje AJ, Richardson AC, Westneat MW: Biodiversity inventories and conservation of the marine fishes of Bootless Bay, Papua New Guinea. BMC Ecol. 2012,http://www.biomedcentral.com/1472-6785/12/15,
Milner-Gulland EJ, Barlow J, Cadotte MW, Hulme PE, Kerby G, Whittingham MJ: Ensuring applied ecology has impact. J Appl Ecol. 2012, 49: 1-5. 10.1111/j.1365-2664.2011.02102.x.http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2664.2011.02102.x/pdf,
Li S, Guan Y, Zhang W, Zhang F, Cai Z, Wu W, Zhang D, Jie Z, Liang S, Shen D, Qin Y, Xu R, Wang M, Gong M, Yu J, Zhang Y, Han L, Lu D, Wu P, Dai Y, Sun X, Li Z, Tang A, Zhong S, Li X, Chen W, Zhang M, Zhang Z, Chen H, Qin J, Li Y, Wang J: Type 2 Diabetes gut metagenome (microbiome) data from 368 Chinese samples and updated metagenome gene catalog. GigaScience.http://dx.doi.org/10.5524/100036,
Salzberg SL, Dunning Hotopp JC, Delcher AL, Pop M, Smith DR, Eisen MB, Nelson WC: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biol. 2005, 6: R23-10.1186/gb-2005-6-3-r23.http://genomebiology.com/2005/6/3/r23,
E. coli O104:H4 Genome Analysis Crowdsourcing.https://github.com/ehec-outbreak-crowdsourced/BGI-data-analysis/wiki,
I Don’t Think the German Outbreak E. coli Strain Is Novel: Something Very Similar Was Isolated Ten Years Ago.http://scienceblogs.com/mikethemadbiologist/2011/06/03/i-dont-think-the-german-e-coli/,
Rohde H, Qin J, Cui Y, Li D, Loman NJ, Hentschke M, Chen W, Pu F, Peng Y, Li J, Xi F, Li S, Li Y, Zhang Z, Yang X, Zhao M, Wang P, Guan Y, Cen Z, Zhao X, Christner M, Kobbe R, Loos S, Oh J, Yang L, Danchin A, Gao GF, Song Y, Li Y, Yang H, The E. coli O104:H4 Genome Analysis Crowd-Sourcing Consortium: Open-Source Genomic Analysis of Shiga-Toxin–Producing E. coli O104:H4. New Eng J Med. 2011, 365: 718-724. 10.1056/NEJMoa1107643.http://www.nejm.org/doi/full/10.1056/NEJMoa1107643,
Beck J, Ballesteros-Mejia L, Buchmann CM, Dengler J, Fritz SA, Gruber B, Hof C, Jansen F, Knapp S, Kreft H, Schneider AK, Winter M, Dormann CF: What’s on the horizon for macroecology?. Ecography. 2012, 35 (8): 673-683. 10.1111/j.1600-0587.2012.07364.x.http://onlinelibrary.wiley.com/doi/10.1111/j.1600-0587.2012.07364.x/abstract,
Roche DG, Lanfear R, Binning SA, Haff TM, Schwanz LE, Cain KE, Kokko H, Jennions MD, Kruuk LEB: Troubleshooting public data archiving: suggestions to increase participation. PLoS Biol. 2013,http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001779,
Hardisty A, Roberts D, The Biodiversity Informatics Community: A decadal view of biodiversity informatics: challenges and priorities. BMC Ecol. 2013, 13: 16-10.1186/1472-6785-13-16.http://www.biomedcentral.com/1472-6785/13/16,
Moritz T, Krishnan S, Roberts D, Ingwersen P, Agosti D, Penev L, Cockerill M, Chavan V: Towards mainstreaming of biodiversity data publishing: recommendations of the GBIF Data Publishing Framework Task Group. BMC Bioinforma. 2011, 12 (Supp 15): S1-http://www.biomedcentral.com/1471-2105/12/S15/S1,
ISA tools.http://www.isa-tools.org/,
Just Get Over Yourself and Share Your Data.http://emhart.info/blog/2014/03/04/data-sharing/,
Stoltzfus A, O’Meara B, Whitacre J, Mounce R, Gillespie EL, Kumar S, Rosauer DS, Vos RA: Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis. BMC Research Notes. 2012,http://www.biomedcentral.com/1756-0500/5/574,
Reichman OJ, Jones MB, Schildhauer MP: Challenges and opportunities of open data in ecology. Science. 2011, 331 (6018): 703-705. 10.1126/science.1197962.http://www.sciencemag.org/content/331/6018/703.short,
I own my data, until I don’t.http://smallpondscience.com/2014/03/03/i-own-my-data-until-i-dont/,
Code as a research object: a new project.http://mozillascience.org/code-as-a-research-object-a-new-project/,
Chavan V, Penev L: The data paper: a mechanism to incentivize data publishing in biodiversity science. BMC Bioinforma. 2011, 12 (Suppl 15): S2-10.1186/1471-2105-12-S15-S2.http://www.biomedcentral.com/1471-2105/12/S15/S2,
National Science Foundation Grant Proposal Guide. Chapter II - Proposal Preparation Instructions.http://www.nsf.gov/pubs/policydocs/pappguide/nsf13001/gpg_2.jsp#IIC2fic,
Gleditsch NP, Metelits C, Strand H: Posting your data: will you be scooped or will you be famous?. Int Stud Perspect. 2003, 4 (1): 89-97.http://www.prio.no/Publications/Publication/?x=600,
Piwowar HA, Day RS, Fridsma DB: Sharing detailed research data is associated with increased citation rate. PLoS ONE. 2007, 2 (3): e308-10.1371/journal.pone.0000308. doi:10.1371/journal.pone.0000308
Pienta AM, Alter GC, Lyle JA: The enduring value of social science research: the use and reuse of primary research data. Paper presented at “The Organisation, Economics and Policy of Scientific Research” workshop, Torino, Italy, in April. 2010,http://deepblue.lib.umich.edu/handle/2027.42/78307,
Piwowar HA, Vision TJ: Data reuse and the open data citation advantage. Peer J. 2013, 1: e175-https://peerj.com/articles/175/,
Jowit J: Sharp decline in public’s belief in climate threat, British poll reveals. Guardian. 2010, 9-http://www.theguardian.com/environment/2010/feb/23/british-public-belief-climate-poll,