An isotopic study of abiotic nitrite oxidation by ligand-bound manganese (III)

Aigle, 2017, Physiological and transcriptional approaches reveal connection between nitrogen and manganese cycles in Shewanella algae C6G3, Sci. Rep., 7, 44725, 10.1038/srep44725

Anschutz, 2000, Interactions between metal oxides and species of nitrogen and iodine in bioturbated marine sediments, Geochim. Cosmochim. Acta, 64, 2751, 10.1016/S0016-7037(00)00400-2

Babbin, 2020, Nitrite oxidation exceeds reduction and fixed nitrogen loss in anoxic Pacific waters, Mar. Chem., 224, 10.1016/j.marchem.2020.103814

Bartlett, 2007, The biogeochemistry of a manganese-rich Scottish sea loch: Implications for the study of anoxic nitrification, Cont. Shelf Res., 27, 1501, 10.1016/j.csr.2007.01.027

Bartlett, 2008, Anoxic nitrification: Evidence from Humber Estuary sediments (UK), Chem. Geol., 250, 29, 10.1016/j.chemgeo.2008.02.001

Bartlett, 1981, Nonmicrobial nitrite-to-nitrate transformation in soils, Soil Sci. Soc. Am. J., 45, 1054, 10.2136/sssaj1981.03615995004500060009x

Beman, 2013, Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean, ISME J., 7, 2192, 10.1038/ismej.2013.96

Bianchi, 1997, Nitrification rates, ammonium and nitrate distribution in upper layer of the water column and in sediments of the Inidian sector of the Southern Ocean, Deep Sea Res. Part II, 44, 1017, 10.1016/S0967-0645(96)00109-9

Bourbonnais, 2015, N-loss isotope effects in the Peru oxygen minimum zone studied using a mesoscale eddy as a natural tracer experiment, Global Biogeochem. Cycles, 29, 793, 10.1002/2014GB005001

Braman, 1989, Nanogram nitrite and nitrate determination in environmental and biological materials by vanadium (III) reduction with chemiluminescence detection, Anal. Chem., 61, 2715, 10.1021/ac00199a007

Brand, 2009, Comprehensive inter-laboratory calibration of reference materials for δ18O versus VSMOW using various on-line high-temperature conversion techniques, Rapid Commun. Mass Spectrom., 23, 999, 10.1002/rcm.3958

Bristow, 2016, Ammonium and nitrite oxidation at nanomolar oxygen concentrations in oxygen minimum zone waters, Proc. Natl. Acad. Sci., 113, 10601, 10.1073/pnas.1600359113

Brunner, 2013, Nitrogen isotope effects induced by anammox bacteria, Proc. Natl. Acad. Sci., 110, 18994, 10.1073/pnas.1310488110

Buchwald, 2010, Oxygen isotopic fractionation and exchange during bacterial nitrite oxidation, Limnol. Oceanogr., 55, 1064, 10.4319/lo.2010.55.3.1064

Buchwald, 2013, Isotopic ratios of nitrite as tracers of the sources and age of oceanic nitrite, Nat. Geosci., 6, 309, 10.1038/ngeo1745

Buchwald, 2016, Constraining the role of iron in environmental nitrogen transformations: Dual stable isotope systematics of abiotic NO2− reduction by Fe(II) and its production of N2O, Geochim. Cosmochim. Acta, 186, 1, 10.1016/j.gca.2016.04.041

Buchwald, 2018, Isotopic constraints on nitrogen transformation rates in the deep sedimentary marine biosphere, Global Biogeochem. Cycles, 32, 1688, 10.1029/2018GB005948

Burgin, 2011, Beyond carbon and nitrogen: how the microbial energy economy couples elemental cycles in diverse ecosystems, Front. Ecol. Environ., 9, 44, 10.1890/090227

Casciotti, 2009, Inverse kinetic isotope fractionation during bacterial nitrite oxidation, Geochim. Cosmochim. Acta, 73, 2061, 10.1016/j.gca.2008.12.022

Casciotti, 2016, Nitrogen and Oxygen Isotopic Studies of the Marine Nitrogen Cycle, Ann. Rev. Mar. Sci., 8, 379, 10.1146/annurev-marine-010213-135052

Casciotti, 2007, Oxygen isotopes in nitrite: Analysis, calibration and equilibration, Anal. Chem., 79, 2427, 10.1021/ac061598h

Casciotti, 2011

Casciotti, 2007, Isotopic analyses of nitrate and nitrite from reference mixtures and application to Eastern Tropical North Pacific waters, Mar. Chem., 107, 184, 10.1016/j.marchem.2007.06.021

Casciotti, 2002, Measurement of the oxygen isotopic composition of nitrate in seawater and freshwater using the denitrifier method, Anal. Chem., 74, 4905, 10.1021/ac020113w

Cavazos, 2018, Kinetics of nitrous oxide production from hydroxylamine oxidation by birnessite, Mar. Chem., 202, 49, 10.1016/j.marchem.2018.03.002

Dalsgaard, 2005, Anaerobic ammonium oxidation (anammox) in the marine environment, Res. Microbiol., 156, 457, 10.1016/j.resmic.2005.01.011

Dhakar, 1996, A coupled, non-linear, steady-state model for early diagenesis processes in pelagic sediments, Am. J. Sci., 296, 296, 10.2475/ajs.296.3.296

Dijkstra, 2018, Phosphorus dynamics in and below the redoxcline in the Black Sea and implications for phosphorus burial, Geochim. Cosmochim. Acta, 222, 685, 10.1016/j.gca.2017.11.016

Doane, 2017, The Abiotic Nitrogen Cycle, Earth Space Chem., 1, 411, 10.1021/acsearthspacechem.7b00059

Dore, 1996, Nitrification in the euphotic zone as a source of nitrite, nitrate, and nitrous oxide at Station ALOHA, Limnol. Oceanogr., 41, 1619, 10.4319/lo.1996.41.8.1619

Fernandes, 2015, Anaerobic nitrification-denitrification mediated by Mn-oxides in meso-tidal sediments: Implications for N2 and N2O production, J. Mar. Syst., 144, 1, 10.1016/j.jmarsys.2014.11.011

Füssel, 2012, Nitrite oxidation in the Namibiam oxygen minimum zone, ISME J., 6, 1200, 10.1038/ismej.2011.178

Gaye, 2013, Evidence of parallel denitrification and nitrite oxidation in the ODZs of the Arabian Sea from paired stable isotopes of nitrate and nitrite, Global Biogeochem. Cycles, 27, 1059, 10.1002/2011GB004115

Grabb, 2017, A dual isotopic investigation of chemodenitrification by mineral-associated Fe(II) and its production of nitrous oxide, Geochim. Cosmochim. Acta, 196, 388, 10.1016/j.gca.2016.10.026

Granger, 2009, Removal of nitrite with sulfamic acid for nitrate N and O isotope analysis with the denitrifier method, Rapid Commun. Mass Spectrom., 23, 3753, 10.1002/rcm.4307

Granger, 2016, Isotopic overprinting of nitrification on denitrification as a ubiquitous and unifying feature of environmental nitrogen cycling, PNAS, 113, E6391, 10.1073/pnas.1601383113

Gruber, 2008, An Earth-system perspective of the global nitrogen cycle, Nature, 451, 293, 10.1038/nature06592

Heil, 2015, Abiotic nitrous oxide production from hydroxylamine in soils and their dependence on soil properties, Siol. Biol. Biochem., 84, 107, 10.1016/j.soilbio.2015.02.022

Heil, 2016, A review of chemical reactions of nitrification intermediates and their role in nitrogen cycling and nitrogen trace gas formation in soil, Eur. J. Soil Sci., 67, 23, 10.1111/ejss.12306

Heiss, 2016, Coastal water column ammonium and nitrite oxidation are decoupled in summer, Estuar. Coast. Shelf Sci., 178, 110, 10.1016/j.ecss.2016.06.002

Hollocher, 1984, Source of the Oxygen Atoms of Nitrate in the Oxidation of Nitrite by Nitrobacter agilis and Evidence against a P-O-N Anhydride Mechanism in Oxidative Phosphorylation, Arch. Biochem. Biophys., 233, 721, 10.1016/0003-9861(84)90499-5

Hulth, 2005, Nitrogen removal in marine environments: Recent findings and future research challenges, Mar. Chem., 94, 125, 10.1016/j.marchem.2004.07.013

Hulth, 1999, Coupled anoxic nitrification/manganese reduction in marine sediments, Geochim. Cosmochim. Acta, 63, 49, 10.1016/S0016-7037(98)00285-3

Jetten, 1999, The anaerobic oxidation of ammonium, FEMS Microbiol. Rev., 22, 421, 10.1111/j.1574-6976.1998.tb00379.x

Jones, 2019, Concentrations of reactive Mn(III)-L and MnO2 in estuarine and marine waters determined using spectrophotometry and the leuco base, leucoberbelin blue, Talanta, 200, 91, 10.1016/j.talanta.2019.03.026

Kartal, 2011, Molecular mechanims of anaerobic ammonium oxidation, Nature, 479, 127, 10.1038/nature10453

Kendall, 2007, Tracing anthropogenic inputs of nitrogen to ecosystems, 592

Kobayashi, 2019, Dual nitrogen and oxygen isotope fractionation during anaerobic ammonium oxidation by anammox bacteria, ISME J., 10.1038/s41396-019-0440-x

Kondo, 2015, Iron redox cycling and subsurface offshore transport in the eastern tropical South Pacific oxygen minimum zone, Mar. Chem., 168, 95, 10.1016/j.marchem.2014.11.007

Kostka, 1995, Chemical and biological reduction of Mn(III)-pyrophosphate complexes: Potential importance of dissolved Mn(III) as an environmental oxidant, Geochim. Cosmochim. Acta, 59, 885

Krumbein, 1973, A new method for detection and enumeration of manganese-oxidizing and -reducing microorganisms, Helgol. Wiss. Meeresunters, 25, 347, 10.1007/BF01611203

Kuypers, 2003, Anaerobic ammonium oxidation by anammox bacteria in the Black Sea, Nature, 422, 608, 10.1038/nature01472

Lam, 2007, Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea, PNAS, 104, 7104, 10.1073/pnas.0611081104

Landing, 1987, The contrasting biogeochemistry of iron and manganese in the Pacific Ocean, Geochim. Cosmochim. Acta, 51, 29, 10.1016/0016-7037(87)90004-4

Lewis, 1991, The biogeochemistry of manganese and iron in the Black Sea, Deep Sea Res. Part A – Oceanogr. Res. Papers, 38, S773, 10.1016/S0198-0149(10)80009-3

Lewis, 2000, Processes controlling the distribution and cycling of manganese in the oxygen minimum zone of the Arabian Sea, Deep Sea Res. Part II, 47, 1541, 10.1016/S0967-0645(99)00153-8

Lin, 2014, Key geochemical factors regulating Mn(IV)-catalyzed anaerobic nitrification in coastal sediments, Geochim. Cosmochim. Acta, 133, 17, 10.1016/j.gca.2014.01.025

Lupschultz, 1990, Bacterial transformations of inorganic nitrogen in the oxygen-deficient waters of the Eastern Tropical South Pacific Ocean, Deep-Sea Res., 37, 1513, 10.1016/0198-0149(90)90060-9

Luther, 2002, Kinetics of the abiotic reduction of polymeric manganese dioxide by nitrite: An anaerobic nitrification reaction, Aquat. Geochem., 8, 15, 10.1023/A:1020325604920

Luther, 1997, Interactions of manganese with the nitrogen cycle: Alternative pathways to dinitrogen, Geochim. Cosmochim. Acta, 61, 4043, 10.1016/S0016-7037(97)00239-1

Luther, 2010, The role of one- and two-electron transfer reactions in forming thermodynamically unstable intermediates as barriers in multi-electron redox reactions, Aquat. Geochem., 16, 395, 10.1007/s10498-009-9082-3

Luther, 2018, Reduction of Manganese Oxides: Thermodynamic, Kinetic and Mechanistic Considerations for One- Versus Two-Electron Transfer Steps, Aquat. Geochem., 24, 257, 10.1007/s10498-018-9342-1

Madison, 2011, Simultaneous determination of soluble manganse(III), manganese(II) and total manganese in natural (pore)waters, Talanta, 84, 374, 10.1016/j.talanta.2011.01.025

Madison, 2013, Abundant porewater Mn(III) is a major component of the sedimentary redox system, Science, 341, 875, 10.1126/science.1241396

Mandernack, 1995, Oxygen isotope analyses of chemically and microbially produced manganese oxides and manganates, Geochim. Cosmochim. Acta, 59, 4409, 10.1016/0016-7037(95)00299-F

Mariotti, 1981, Experimental determination of nitrogen kinetic isotope fractionation: some principles; illustration for the denitrification and nitrification processes, Plant Soil, 62, 413, 10.1007/BF02374138

McIlvin, 2005, Chemical conversion of nitrate and nitrite to nitrous oxide for nitrogen and oxygen isotopic analysis in freshwater and seawater, Anal. Chem., 77, 5589, 10.1021/ac050528s

Melton, 2014, The interplay of microbially mediate and abiotic reactions in the biogeochemical Fe cycle, Nat. Rev. Microbiol., 12, 797, 10.1038/nrmicro3347

Moffett, 2007, Reduced iron associated with secondary nitrite maxima in the Arabian Sea, Deep Sea Res. Part II, 54, 1341, 10.1016/j.dsr.2007.04.004

Moore, 2011, Prevalence of anaerobic ammonium-oxidizing bacteria in contaminated groundwater, Environ. Sci. Technol., 45, 7217, 10.1021/es201243t

Mortimer, 2004, Anoxic nitrification in marine sediments, Mar. Ecol. Prog. Ser., 276, 37, 10.3354/meps276037

Mortimer, 2002, Evidence for suboxic nitrification in recent marine sediments, Mar. Ecol. Prog. Ser., 236, 31, 10.3354/meps236031

Nameroff, 2002, Suboxic trace metal geochemistry in the Eastern Tropical North Pacific, Geochim. Cosmochim. Acta, 66, 1139, 10.1016/S0016-7037(01)00843-2

Nelson, 2002, Effect of oxide formation mechanisms on lead adsorption by biogenic manganese (hydr)oxides, iron (hydr)oxides and their mixtures, Environ. Sci. Technol., 36, 421, 10.1021/es010907c

Nowka, 2015, Comparison of oxidation kinetics of nitrite-oxidizing bacteria: Nitrite availability as a key factor in niche differentiation, Appl. Environ. Microbiol., 81, 745, 10.1128/AEM.02734-14

Oldham, 2017, Oxidative and reductive processes contributing to manganese cycling at oxic-anoxic interfaces, Mar. Chem., 195, 122, 10.1016/j.marchem.2017.06.002

Oldham, 2017, Revisiting Mn and Fe removal in humic rich estuaries, Geochim. Cosmochim. Acta, 209, 267, 10.1016/j.gca.2017.04.001

Oldham, 2015, Evidence for the presence of strong Mn(III)-binding ligands in the water column of Chesapeake Bay, Mar. Chem., 171, 58, 10.1016/j.marchem.2015.02.008

Ostrom, 2016, Chemodenitrification in the cryoecosystem of Lake Vida, Victoria Valley, Antarctica, Geobiology, 14, 575, 10.1111/gbi.12190

Pai, 1990, Formation kinetics of the pink azo dye in the determination of nitrite in natural waters, Anal. Chim. Acta, 232, 345, 10.1016/S0003-2670(00)81252-0

Peng, 2015, Ammonia and nitrite oxidation in the Eastern Tropical North Pacific, Global Biogeochem. Cycles, 29, 2034, 10.1002/2015GB005278

Peters, 2018, Estimating fixen nitrogen loss and associated isotope effects using concentration and isotope measurements of NO3−, NO2−, and N2 from the Eastern Tropical South Pacific oxygen deficient zone, Deep-Sea Res. Part II, 156, 121, 10.1016/j.dsr2.2018.02.011

Post, 1999, Manganese oxide minerals: Crystal structures and economic and environmental significance, Proc. Natl. Acad. Sci. USA, 96, 3447, 10.1073/pnas.96.7.3447

Sigman, 2001, A Bacterial Method for the Nitrogen Isotopic Analysis of Nitrate in Seawater and Freshwater, Anal. Chem., 73, 4145, 10.1021/ac010088e

Sigman, 2005, Coupled nitrogen and oxygen isotope measurements of nitrate along the eastern North Pacific margin, Global Biogeochem. Cycles, 19, GB4022, 10.1029/2005GB002458

Stanton, 2018, Nitrous oxide from chemodenitrification: A possible missing link in the Proterozoic greenhouse and the evolution of the aerobic respiration, Geobiology, 1

Stone, 1984, Reduction and dissolution of manganese(III) and manganese(IV) oxides by organics. 2. Survey of the reactivity of organics, Environ. Sci. Technol., 18, 617, 10.1021/es00126a010

Strous, 2006, Deciphering the evolution and metabolism of an anammox bacterium from a community genome, Nature, 440, 790, 10.1038/nature04647

Sun, 2017, Dependence of nitrite oxidation on nitrite and oxygen in low-oxygen seawater, Geophys. Res. Lett., 44, 7883, 10.1002/2017GL074355

Swathi, 2017, Microbial mediated anoxic nitrification-denitrification in the presence of nanoscale oxides of manganese, Int. Biodeterior. Biodegrad., 119, 499, 10.1016/j.ibiod.2016.10.043

Thamdrup, 2000, The fate of ammonium in anoxic manganese oxide-rich marine sediment, Geochim. Cosmochim. Acta, 64, 4157, 10.1016/S0016-7037(00)00496-8

Trouwborst, 2006, Soluble Mn(III) in suboxic zones, Science, 313, 1955, 10.1126/science.1132876

Wankel, 2017, Evidence for non-traditional N2O formation pathways in nitrogen-impacted coastal ecosystems: fungal and chemodentrification, Nat. Commun., 8, 15595, 10.1038/ncomms15595

Ward, 2011, Measurement and distribution of nitrification rates in the oceans, Methods Enzymol., 486, 307, 10.1016/B978-0-12-381294-0.00013-4

Ward, 1989, Biological nitrogen cycling in the nitracline, Limnol. Oceanogr., 34, 493, 10.4319/lo.1989.34.3.0493

Wilczak, 1993, Manganese control during ozonation of water containing organic compounds, J. Am. Water Works Assoc., 85, 10, 10.1002/j.1551-8833.1993.tb06084.x

Yakushev, 2009, Importance of the different manganese species in the formation of water column redox zones: observations and modeling, Mar. Chem., 117, 59, 10.1016/j.marchem.2009.09.007

Yakushev, 2007, Analysis of the water column oxic/anoxic interface in the Black and Baltic seas with a numerical model, Mar. Chem., 107, 388, 10.1016/j.marchem.2007.06.003

Zhu-Barker, 2015, The importance of abiotic reactions for nitrous oxide production, Biogeochemistry, 126, 251, 10.1007/s10533-015-0166-4