An investigation of the biodiversity of thermophilic and thermotolerant fungal species in composts using culture-based and molecular techniques
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Anastasi, 2005, Isolation and identification of fungal communities in compost and vermicompost, Mycologia, 97, 33, 10.3852/mycologia.97.1.33
Anderson, 2004, Diversity and ecology of soil fungal communities: increased understanding through the application of molecular techniques, Environmental Microbiology, 6, 769, 10.1111/j.1462-2920.2004.00675.x
Baldrian, 2012, Active and total microbial communities in forest soil are largely different and highly stratified during decomposition, ISME Journal, 6, 248, 10.1038/ismej.2011.95
Barratt, 2003, Fungi are the predominant micro-organisms responsible for degradation of soil-buried polyester polyurethane over a range of soil water holding capacities, Journal of Applied Microbiology, 95, 78, 10.1046/j.1365-2672.2003.01961.x
Blackwell, 2011, The fungi: 1, 2, 3... 5.1 million species?, American Journal of Botany, 98, 426, 10.3732/ajb.1000298
Bonito, 2010, Identification of fungi associated with municipal compost using DNA-based techniques, Bioresource Technology, 101, 1021, 10.1016/j.biortech.2009.08.109
Buee, 2009, 454 pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity, New Phytologist, 184, 449, 10.1111/j.1469-8137.2009.03003.x
Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nature Methods, 7, 335, 10.1038/nmeth.f.303
Cooney, 1964
Cosgrove, 2007, Fungal communities associated with degradation of polyester polyurethane in soil, Applied Environmental Microbiology, 73, 5817, 10.1128/AEM.01083-07
de Bertoldi, 1983, The biology of composting: a review, Waste Management Research, 1, 157, 10.1177/0734242X8300100118
De Gannes, 2013, Prokaryotic successions and diversity in composts as revealed by 454-pyrosequencing, Bioresource Technology, 133, 573, 10.1016/j.biortech.2013.01.138
Deploey, 1990, The effects of temperature, nutrients, and spore concentration on the germination of conidia from Dactylomyces thermophilus, Biodeterioration Research, 3, 617, 10.1007/978-1-4757-9453-3_49
Edgar, 2010, Search and clustering orders of magnitude faster than BLAST, Bioinformatics, 26, 2460, 10.1093/bioinformatics/btq461
Ellis, 1980, Thermophilous fungi isolated from some Antarctic and Sub-Antarctic soils, Mycologia, 72, 1033, 10.2307/3759744
Epstein, 1997
Fergus, 1971, The temperature relationships and thermal resistance of a new thermophilic Papulaspora from mushroom compost, Mycologia, 63, 426, 10.2307/3757775
Finstein, 1975, Microbiology of municipal solid waste composting, 113, 10.1016/S0065-2164(08)70427-1
Hansgate, 2005, Molecular characterization of fungal, community dynamics in the initial stages of composting, FEMS Microbiology Ecology, 51, 209, 10.1016/j.femsec.2004.08.009
Hawksworth, 2012, Global species numbers of fungi: are tropical studies and molecular approaches contributing to a more robust estimate?, Biodiversity and Conservation, 21, 2425, 10.1007/s10531-012-0335-x
Hawksworth, 1997, Where are all the undescribed fungi?, Phytopathology, 87, 888, 10.1094/PHYTO.1997.87.9.888
Hong, 1997, Development of a model to predict the effect of temperature and moisture on fungal spore longevity, Annals of Botany, 79, 121, 10.1006/anbo.1996.0316
Hultman, 2010, Utility of molecular tools in monitoring large scale composting, 135
Hultman, 2009, Determination of fungal succession during municipal solid waste composting using a cloning-based analysis, Journal of Applied Microbiology, 108, 472, 10.1111/j.1365-2672.2009.04439.x
Ishii, 2000, Microbial succession during a composting process as evaluated by denaturing gradient gel electrophoresis analysis, Journal of Applied Microbiology, 89, 768, 10.1046/j.1365-2672.2000.01177.x
Jensen, 1948, Thermal death points for spores and mycelia of moulds on fermented tobacco, Physiologia Plantarum, 1, 255, 10.1111/j.1399-3054.1948.tb07129.x
Johri, 1999
Jumpponen, 2009, Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere, New Phytologist, 184, 438, 10.1111/j.1469-8137.2009.02990.x
Kane, 1973, Thermophilic fungi in a municipal waste compost system, Mycologia, 65, 1087, 10.2307/3758290
Kennedy, 2003, Fingerprinting the fungal community, Mycologist, 17, 158, 10.1017/S0269915X04004057
Kerekes, 2013, Nutrient enrichment increased species richness of leaf litter fungal assemblages in a tropical forest, Molecular Ecology, 22, 2827, 10.1111/mec.12259
Klamer, 1998, Fungi in a controlled compost system with special emphasis on the thermophilic fungi, 405
Kumar, 2011, Composting of municipal solid waste, Critical Reviews in Biotechnology, 31, 112, 10.3109/07388551.2010.492207
Kutzner, 2000, Microbiology of composting, vol. 11c
Lim, 2010, Assessment of soil fungal communities using pyrosequencing, The Journal of Microbiology, 48, 284, 10.1007/s12275-010-9369-5
Lindahl, 2013, Fungal community analysis by high-throughput sequencing of amplified markers – a user's guide, New Phytologist, 199, 288, 10.1111/nph.12243
Maheshwari, 2000, Thermophilic fungi: their physiology and enzymes, Microbiology and Molecular Biology Reviews, 64, 461, 10.1128/MMBR.64.3.461-488.2000
Mitchell, 2006, Sequences, the environment and fungi, Mycologist, 20, 62, 10.1016/j.mycol.2005.11.004
Monard, 2013, Utilizing ITS1 and ITS2 to study environmental fungal diversity using pyrosequencing, FEMS Microbiology Ecology, 84, 165, 10.1111/1574-6941.12046
Moore, 2011
Morgenstern, 2012, A molecular phylogeny of thermophilic fungi, Fungal Biology, 116, 489, 10.1016/j.funbio.2012.01.010
Mouchacca, 1997, Thermophilic fungi: biodiversity and taxonomic status, Cryptogamie Mycologie, 18, 19
Mouchacca, 2000, Thermotolerant fungi erroneously reported in applied research work as possessing thermophilic attributes, World Journal of Microbiology and Biotechnology, 16, 869, 10.1023/A:1008979123304
Novinscak, 2009, Characterization of bacterial and fungal communities in composted biosolids over a 2 year period using denaturing gradient gel electrophoresis, Canadian Journal of Microbiology, 55, 375, 10.1139/W08-152
O'Donnell, 1993, Fusarium and its near relatives, 225
Poulsen, 2008, Determination of a relationship between chitinase activity and microbial diversity in chitin amended compost, Bioresource Technology, 99, 4355, 10.1016/j.biortech.2007.08.042
Pullman, 1981, Soil solarization and thermal death – a logarithmic relationship between time and temperature for 4 soilborne plant-pathogens, Phytopathology, 71, 959, 10.1094/Phyto-71-959
Ranjard, 2000, Monitoring complex bacterial communities using culture-independent molecular techniques: application to soil environment, Research in Microbiology, 151, 167, 10.1016/S0923-2508(00)00136-4
Reeder, 2010, Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions, Nature Methods, 7, 668, 10.1038/nmeth0910-668b
Ryckeboer, 2003, A survey of bacteria and fungi occurring during composting and self-heating processes, Annals of Microbiology, 53, 349
Schoch, 2009, The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits, Systematic Biology, 58, 224, 10.1093/sysbio/syp020
Sharma, 1989, Economic importance of thermophilous fungi, Applied Microbiology and Biotechnology, 31, 1
Singer, 2000, 1
Straatsma, 1994, Ecology of thermophilic fungi in mushroom compost, with emphasis on Scytalidium thermophilum and growth-stimulation of Agaricus bisporus mycelium, Applied and Environmental Microbiology, 60, 454, 10.1128/AEM.60.2.454-458.1994
Szekely, 2009, DGGE and T-RFLP analysis of bacterial succession during mushroom compost production and sequence-aided T-RFLP profile of mature compost, Microbial Ecology, 57, 522, 10.1007/s00248-008-9424-5
Tansey, 1971, Isolation of thermophilic fungi from self-heated, industrial wood chip piles, Mycologia, 63, 537, 10.2307/3757550
Tansey, 1977, Growth of thermophilic and thermotolerant fungi in soil in situ and in vitro, Mycologia, 69, 563, 10.2307/3758560
Tedersoo, 2010, 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases, New Phytologist, 188, 291, 10.1111/j.1469-8137.2010.03373.x
Tuomela, 2000, Biodegradation of lignin in a compost environment: a review, Bioresource Technology, 72, 169, 10.1016/S0960-8524(99)00104-2
Vaz-Moreira, 2008, Diversity of bacterial isolates from commercial and homemade composts, Microbial Ecology, 55, 714, 10.1007/s00248-007-9314-2
Webb, 2000, Fungal colonization and biodeterioration of plasticized polyvinyl chloride, Applied and Environmental Microbiology, 66, 3194, 10.1128/AEM.66.8.3194-3200.2000
Webster, 2007
White, 1990, Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, 315
