An integrative analysis platform for multiple neural spike train data

Bongard M, Micol D, Fernandez E. 2004. Nev2lkit: a tool for handling neuronal event files, available at: http://www.nev2lkit.sourceforge.net/. Bonomini, 2005, DATA-MEAns: An open source tool for the classification and management of neural ensemble recordings, J Neurosci Meth, 148, 137, 10.1016/j.jneumeth.2005.04.008 Bove, 1997, In vitro 2D networks of neurons characterized by processing the signals recorded with a planar microtransducer array, IEEE Trans Biomed Eng, 44, 964, 10.1109/10.634649 Brown, 2004, Multiple neural spike train analysis:state-of-the-art and future challenges, Nat Neurosci, 7, 456, 10.1038/nn1228 Chiappalone, 2003, Networks of neurons coupled to microelectrode arrays: a neuronal sensory system for pharmacological applications, Biosens Bioelectron, 18, 627, 10.1016/S0956-5663(03)00041-1 Egert, 2002, MEA-Tools: an open source toolbox for the analysis of multi-electrode data with Matlab, J Neurosci Meth, 117, 33, 10.1016/S0165-0270(02)00045-6 Fee, 1996, Automatic sorting of multiple unit neuronal signals in the presence of anisotropic and non-Gaussian variability, J Neurosci Meth, 69, 175, 10.1016/S0165-0270(96)00050-7 Fernández, 2000, Population coding in spike trains of simultaneously recorded retinal ganglion cells, Brain Res, 887, 222, 10.1016/S0006-8993(00)03072-9 Gross, 1979, Simultaneous single unit recording in vitro with a photoetched laser deinsulated gold multimicroelectrode surface, IEEE Trans Biomed Eng, 26, 273, 10.1109/TBME.1979.326402 Gustavo, 1997, Information transmission and temporal code in central spiking neurons, Phys Rev Lett, 79, 4697, 10.1103/PhysRevLett.79.4697 Harris, 2000, Accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements, J Neurophysiol, 84, 401, 10.1152/jn.2000.84.1.401 Hollingsworth, D. 1995. The workflow reference model. Technical Report (WFMC-TC00-1003) Workflow Management Coalition. Available at http://www.wfmc.org/. Jimbo, 2000, The dynamics of a neuronal culture of dissociated cortical neurons of neonatal rats, Biol Cybern, 83, 1, 10.1007/PL00007970 Leland, 1994, On the self-similar nature of Ethernet traffic, IEEE/ACM Trans Networking, 2, 1, 10.1109/90.282603 Lewicki, 1998, A review of methods for spike sorting: the detection and classification of neural action potentials, Network Comput Neural Syst, 9, R53, 10.1088/0954-898X/9/4/001 Müller, 2006, A distributed computing system for multivariate time series analyses of multichannel neurophysiological data, J Neurosci Methods, 152, 190, 10.1016/j.jneumeth.2005.09.002 Normann, 2001, High-resolution spatio-temporal mapping of visual pathways using multi-electrode arrays, Vision Res, 41, 1261, 10.1016/S0042-6989(00)00273-X Novellino, 2003, Behaviors from an electrically stimulated spinal cord neuronal networkcultured on microelectrode arrays, Neurocomputing, 52–54, 661, 10.1016/S0925-2312(02)00861-5 Pine, 1980, Recording action potentials from cultured neurons with extracellular microcircuit electrodes, J Neurosci Methods, 2, 19, 10.1016/0165-0270(80)90042-4 Potter, 2001, Distributed processing in cultured neuronal networks, Prog Brain Res, 130, 49, 10.1016/S0079-6123(01)30005-5 Quian Quiroga, 2004, Unsupervised spike sorting with wavelets and superparamagnetic clustering, Neural Comput, 16, 1661, 10.1162/089976604774201631 Rieke, 1997 Segev, 2000, Detection and sorting of neural spikes using wavelet packages, Phys Rev Lett, 85, 4637, 10.1103/PhysRevLett.85.4637 Shoham, 2003, Robust, automatic spike sorting using mixtures of multivariate t-distributions, J Neurosci Methods, 127, 111, 10.1016/S0165-0270(03)00120-1 Thomas, 1972, A miniature microelectrode array to monitor the bioelectric activity of cultured cells, Exp Cell Res, 74, 61, 10.1016/0014-4827(72)90481-8 Tiwari, 2007, Workflow based framework for life science informatics, Comput Biol Chem, 31, 305, 10.1016/j.compbiolchem.2007.08.009 Vato, 2004, Spike manager: a new tool for spontaneous and evoked neuronal networks activity characterization, Neurocomputing, 58–60, 1153, 10.1016/j.neucom.2004.01.180