An in silico structural, functional and phylogenetic analysis with three dimensional protein modeling of alkaline phosphatase enzyme of Pseudomonas aeruginosa

Journal of Genetic Engineering and Biotechnology - Tập 15 - Trang 527-537 - 2017
Krishnendu Pramanik1, Pallab Kumar Ghosh2, Soumyajit Ray1, Anumita Sarkar3, Soumik Mitra1, Tushar Kanti Maiti1
1Microbiology Laboratory, Department of Botany, Burdwan University, West Bengal 713104, India
2Department of Marine Science, Calcutta University, 35, Ballygunge Circular Road, Calcutta 700019, West Bengal, India
3Department of Botany, Government General Degree College, Singur, West Bengal 712409, India

Tài liệu tham khảo

Sagarvanshi, 2012, Int. J. Lif. Sci. Pharam. Res., 2, 256 P. Joshi, G.K. Joshi, Tanuja, et al., in: D. Maheshwari (ed.), Bacterial Diversity in Sustainable Agriculture, Sustainable Development and Biodiversity, 2014, pp. 227–264. http://dx.doi.org/10.1007/978-3-319-05936-5_10. Damor, 2016, Int. J. Adv. Res. Sci. Eng., 5, 375 Malboobi, 2009, World J. Microbiol. Biotechnol., 25, 1471, 10.1007/s11274-009-0037-z Chen, 2006, Appl. Soil Ecol., 34, 33, 10.1016/j.apsoil.2005.12.002 Illmer, 1995, Soil Biol. Biochem., 27, 257, 10.1016/0038-0717(94)00190-C Wels, 1992, Nat. Biotechnol., 10, 1128, 10.1038/nbt1092-1128 Zueva, 1993, Biokhimiia, 58, 1009 Suzuki, 1999, J. Immunol. Methods, 224, 171, 10.1016/S0022-1759(99)00020-4 Rankin, 2010, J. Dairy Sci., 93, 5538, 10.3168/jds.2010-3400 World Enzymes, 2014. www.freedoniagroup.com/World-Enzymes.html. Kumar, 2016, Indian J. Microbiol., 56, 64, 10.1007/s12088-016-0565-9 Puri, 2016, Indian J. Microbiol., 56, 277, 10.1007/s12088-016-0575-7 Kaur, 2011, Antimicrob. Agents Chemother., 55, 659, 10.1128/AAC.00436-10 Karumuri, 2015, Indian J. Microbiol., 55, 333, 10.1007/s12088-015-0524-x Kalia, 2015, Indian J. Microbiol., 55, 366, 10.1007/s12088-015-0552-6 Singh, 2012, J. Mol. Model, 18, 4101, 10.1007/s00894-012-1389-0 Verma, 2016, Comp. Biol. Chem., 60, 53, 10.1016/j.compbiolchem.2015.11.001 Pramanik, 2017, Comp. Biol. Chem., 68, 12, 10.1016/j.compbiolchem.2017.02.005 Tamura, 2013, Mol. Biol. Evol., 30, 2725, 10.1093/molbev/mst197 Saitou, 1987, Mol. Biol. Evol., 4, 406 Felsenstein, 1985, Evolution, 39, 783, 10.1111/j.1558-5646.1985.tb00420.x Tamura, 1993, Mol. Biol. Evol., 10, 512 E. Gasteiger, C. Hoogland, A. Gattiker et al., in: Walker (ed.), The proteomics protocols handbook, Humana Press, 2005, pp. 571–607. Chou, 1974, Biochemistry, 13, 211, 10.1021/bi00699a001 Biasini, 2014, Nucleic Acid Res., 42, w252, 10.1093/nar/gku340 Lüthy, 1992, Nature, 356, 83, 10.1038/356083a0 MacArthur, 1994, Curr. Opin. Struct. Biol., 4, 731, 10.1016/S0959-440X(94)90172-4 Szklarczyk, 2015, Nucleic Acids Res., 43, D447, 10.1093/nar/gku1003 Ross, 1951, J. Biol. Chem., 192, 561, 10.1016/S0021-9258(19)77778-3 Campbell, 2014, Chem. Biol. Drug Des., 84, 158, 10.1111/cbdd.12315 Roy, 2015, PLoS ONE, 1 Pathak, 2014, Indian J. Microbiol., 54, 450, 10.1007/s12088-014-0482-8