An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest

NeuroImage - Tập 31 Số 3 - Trang 968-980 - 2006
Rahul S. Desikan1, Florent Ségonne2, Bruce Fischl3,2, Brian T. Quinn3, Bradford C. Dickerson4, Deborah Blacker5, Randy L. Buckner3,6,7, Anders M. Dale8, Paul Maguire9, Bradley T. Hyman4, Marilyn Albert10, Ronald Killiany1
1Department of Anatomy and Neurobiology, Boston University School of Medicine, 715 Albany Street, W701, Boston, MA 02118, USA
2Computer Science and Artificial Intelligence Laboratory (CSAIL), Massachusetts Institute of Technology, Cambridge, MA 02139, USA
3Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA 02118, USA
4Department of Neurology, Massachusetts General Hospital, Charlestown, MA 02129, USA
5Department of Psychiatry, Massachusetts General Hospital, Charlestown, MA 02129, USA
6Department of Psychology, Harvard University, Cambridge, MA 02138, USA
7Howard Hughes Medical Institute USA
8Departments of Neuroscience, Radiology and Cognitive Science, University of California, San Diego School of Medicine, San Diego, CA 92093, USA
9Pfizer Global Research and Development, Groton, CT 06340-8012, USA
10Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA

Tóm tắt

Từ khóa


Tài liệu tham khảo

Bakshi, 2005, Imaging of multiple sclerosis: role in neurotherapeutics, NeuroRx, 2, 277, 10.1602/neurorx.2.2.277

Ballmaier, 2004, Localizing gray matter deficits in late-onset depression using computational cortical pattern matching methods, Am. J. Psychiatry, 161, 2091, 10.1176/appi.ajp.161.11.2091

Buckner, 2004, A unified approach for morphometric and functional data analysis in young, old, and demented adults using automated atlas-based head size normalization: reliability and validation against manual measurement of total intracranial volume, NeuroImage, 23, 724, 10.1016/j.neuroimage.2004.06.018

Crespo-Facorro, 2000, Cerebral cortex: a topographic segmentation method using magnetic resonance imaging, Psychiatry Res., 100, 97, 10.1016/S0925-4927(00)00072-X

Csernansky, 2000, Early DAT is distinguished from aging by high-dimensional mapping of the hippocampus. Dementia of the Alzheimer type, Neurology, 55, 1636, 10.1212/WNL.55.11.1636

Csernansky, 2005, Preclinical detection of Alzheimer's disease: hippocampal shape and volume predict dementia onset in the elderly, NeuroImage, 25, 783, 10.1016/j.neuroimage.2004.12.036

Dale, 1993, Improved localization of cortical activity by combining EEG and MEG with MRI cortical surface reconstruction: a linear approach, J. Cogn. Neurosci., 5, 162, 10.1162/jocn.1993.5.2.162

Dale, 1999, Cortical surface-based analysis: I. Segmentation and surface reconstruction, NeuroImage, 9, 179, 10.1006/nimg.1998.0395

Damasio, 1989

Destrieux, 1998, Variability of the human brain studied on the flattened cortical surface, Abstr.-Soc. Neurosci., 24, 1164

Duvernoy, 1991

Efron, 1982

Efron, 1993

Fischl, 2000, Measuring the thickness of the human cerebral cortex from magnetic resonance images, Proc. Natl. Acad. Sci. U. S. A., 97, 11050, 10.1073/pnas.200033797

Fischl, 1999, Cortical surface-based analysis. II: inflation, flattening, and a surface-based coordinate system, NeuroImage, 9, 195, 10.1006/nimg.1998.0396

Fischl, 1999, High-resolution intersubject averaging and a coordinate system for the cortical surface, Hum. Brain Mapp., 8, 272, 10.1002/(SICI)1097-0193(1999)8:4<272::AID-HBM10>3.0.CO;2-4

Fischl, 2001, Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortex, IEEE Trans. Med. Imaging, 20, 70, 10.1109/42.906426

Fischl, 2002, Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain, Neuron, 33, 341, 10.1016/S0896-6273(02)00569-X

Fischl, 2004, Automatically parcellating the human cerebral cortex, Cereb. Cortex, 14, 11, 10.1093/cercor/bhg087

Fotenos, 2005, Normative estimates of cross-sectional and longitudinal brain volume decline in aging and AD, Neurology, 64, 1032, 10.1212/01.WNL.0000154530.72969.11

Fox, 1999, Serial magnetic resonance imaging of cerebral atrophy in preclinical Alzheimer's disease, Lancet, 353, 2125, 10.1016/S0140-6736(99)00496-1

Fox, 2001, Imaging of onset and progression of Alzheimer's disease with voxel-compression mapping of serial magnetic resonance images, Lancet, 358, 201, 10.1016/S0140-6736(01)05408-3

Fox, 2005, Neurology, 64, 1563, 10.1212/01.WNL.0000159743.08996.99

Freeborough, 1998, MR image texture analysis applied to the diagnosis and tracking of Alzheimer's disease, IEEE Trans. Med. Imaging, 17, 475, 10.1109/42.712137

Freeborough, 1998, Modeling brain deformations in Alzheimer disease by fluid registration of serial 3D MR images, J. Comput. Assist. Tomogr., 22, 838, 10.1097/00004728-199809000-00031

Goncharova, 2001, MRI of human entorhinal cortex: a reliable protocol for volumetric measurement, Neurobiol. Aging, 22, 737, 10.1016/S0197-4580(01)00270-6

Halliday, 2003, Identifying severely atrophic cortical subregions in Alzheimer's disease, Neurobiol. Aging, 24, 797, 10.1016/S0197-4580(02)00227-0

Hammers, 2003, Three-dimensional maximum probability atlas of the human brain, with particular reference to the temporal lobe, Hum. Brain Mapp., 19, 224, 10.1002/hbm.10123

Han, X., Jovicich, J., Salat, D., Van Der Kouwe A., Quinn, B., Czanner, S., Pacheco, J., Albert, M., Killiany, R., Maguire, P., Rosas, D., Makris, N., Dale, A., Fischl, B., submitted for publication. Reliability of MRI-derived measurements of human cerebral cortical thickness: the effects of field strength, scanner upgrade and manufacturer. NeuroImage.

Head, 2005, Frontal-hippocampal double dissociation between normal aging and Alzheimer's disease, Cereb. Cortex, 15, 732, 10.1093/cercor/bhh174

Hsu, 2002, Comparison of automated and manual MRI volumetry of hippocampus in normal aging and dementia, J. Magn. Reson. Imaging, 16, 305, 10.1002/jmri.10163

Kennedy, 1998, Gyri of the human neocortex: an MRI-based analysis of volume and variance, Cereb. Cortex, 8, 372, 10.1093/cercor/8.4.372

Killiany, 1993, Temporal lobe regions on magnetic resonance imaging identify patients with early Alzheimer's disease, Arch. Neurol., 50, 949, 10.1001/archneur.1993.00540090052010

Killiany, 2000, Use of structural magnetic resonance imaging to predict who will get Alzheimer's disease, Ann. Neurol., 47, 430, 10.1002/1531-8249(200004)47:4<430::AID-ANA5>3.0.CO;2-I

Jack, 1995, MRI-based hippocampal volumetrics: data acquisition, normal ranges, and optimal protocol, Magn. Reson. Imaging, 13, 1057, 10.1016/0730-725X(95)02013-J

Jack, 1997, Medial temporal atrophy on MRI in normal aging and very mild Alzheimer's disease, Neurology, 49, 786, 10.1212/WNL.49.3.786

Jack, 2003, MRI as a biomarker of disease progression in a therapeutic trial of milameline for AD, Neurology, 60, 253, 10.1212/01.WNL.0000042480.86872.03

Le Goualher, 1999, Automated extraction and variability analysis of sulcal neuroanatomy, IEEE Trans. Med. Imaging, 18, 206, 10.1109/42.764891

Lohmann, 1998, Extracting line representations of sulcal and gyral patterns in MR images of the human brain, IEEE Trans. Med. Imaging, 17, 1040, 10.1109/42.746714

Mangin, 1995, From 3-D magnetic resonance images to structured representations of the cortex topography using topology preserving deformations, J. Math. Imaging Vis., 5, 297, 10.1007/BF01250286

Mega, 2005, Automated brain tissue assessment in the elderly and demented population: construction and validation of a sub-volume probabilistic brain atlas, NeuroImage, 15, 1009, 10.1016/j.neuroimage.2005.03.031

Miller, 2003, Labeled cortical mantle distance maps of the cingulate quantify differences between dementia of the Alzheimer type and healthy aging, Proc. Natl. Acad. Sci. U. S. A., 100, 15172, 10.1073/pnas.2136624100

Morris, 1993, The Clinical Dementia Rating (CDR): current version and scoring rules, Neurology, 43, 2412, 10.1212/WNL.43.11.2412-a

Onitsuka, 2004, Middle and inferior temporal gyrus gray matter volume abnormalities in chronic schizophrenia: an MRI study, Am. J. Psychiatry, 161, 1603, 10.1176/appi.ajp.161.9.1603

Ono, 1990

Quinn, 2005, Test–retest reliability assessment for longitudinal MRI studies: a comparison of the effects of different T1-weighted protocols, scanner platforms, and field strengths on semi-automated hippocampal volume measures

Rademacher, 1992, Human cerebral cortex: localization, parcellation and morphometry with magnetic resonance imaging, J. Cogn. Neurosci., 4, 352, 10.1162/jocn.1992.4.4.352

Raz, 2004, The aging brain: Structural changes and their implications for cognitive aging, 115

Rettmann, 2002, Automated sulcal segmentation using watersheds on the cortical surface, NeuroImage, 15, 329, 10.1006/nimg.2001.0975

Sandor, 1997, Surface-based labeling of cortical anatomy using a deformable atlas, IEEE Trans. Med. Imaging, 16, 41, 10.1109/42.552054

Ségonne, 2004, A hybrid approach to the skull stripping problem in MRI, NeuroImage, 22, 1060, 10.1016/j.neuroimage.2004.03.032

Ségonne, 2005, A genetic algorithm for the topology correction of cortical surfaces, IPMI-LNCS, 3964, 393

Streiner, 1989

Thompson, 1996, High-resolution random mesh algorithms for creating a probabilistic 3D surface atlas of the human brain, NeuroImage, 3, 19, 10.1006/nimg.1996.0003

Thompson, 2001, Cortical change in Alzheimer's disease detected with a disease-specific population-based brain atlas, Cereb. Cortex, 11, 1, 10.1093/cercor/11.1.1

Tzourio-Mazoyer, 2002, Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain, NeuroImage, 15, 273, 10.1006/nimg.2001.0978

Van Essen, 2005, A Population—Average, Landmark- and Surface-based (PALS) atlas of human cerebral cortex, NeuroImage, 28, 635, 10.1016/j.neuroimage.2005.06.058

Van Hoesen, 2000, Orbitofrontal cortex pathology in Alzheimer's disease, Cereb. Cortex, 10, 243, 10.1093/cercor/10.3.243

Wang, 2003, Changes in hippocampal volume and shape across time distinguish dementia of the Alzheimer type from healthy aging, NeuroImage, 20, 667, 10.1016/S1053-8119(03)00361-6

Wible, 1995, Prefrontal cortex and schizophrenia. A quantitative magnetic resonance imaging study, Arch. Gen. Psychiatry, 52, 279, 10.1001/archpsyc.1995.03950160029007

Wible, 1997, Parcellation of the human prefrontal cortex using MRI, Psychiatry Res., 28, 29, 10.1016/S0925-4927(97)00060-7

Yamasue, 2004, Localized volume reduction in prefrontal, temporolimbic, and paralimbic regions in schizophrenia: an MRI parcellation study, Psychiatry Res., 15, 195, 10.1016/j.pscychresns.2004.05.004

Zilles, 1988, The human pattern of gyrification in the cerebral cortex, Anat. Embryol. (Berl.), 179, 173, 10.1007/BF00304699