An adaptive curvilinear-coordinate approach to dynamic load balancing of parallel multiresolution molecular dynamics
Tài liệu tham khảo
Allen, 1987, Computer Simulation of Liquids, 46
Barnard, 1994, Fast multilevel implementation of recursive spectral bisection for partitioning unstructured problems, Concurrency, 6, 101, 10.1002/cpe.4330060203
Boillat, 1990, Load balancing and Poisson equation in a graph, Concurrency, 2, 289, 10.1002/cpe.4330020403
Car, 1985, Unified approach for molecular dynamics and density-functional theory, Phys. Rev. Lett., 55, 2471, 10.1103/PhysRevLett.55.2471
Cybenko, 1989, Dynamic load balancing for distributed memory multiprocessors, J. Par. Distrib. Comput., 7, 279, 10.1016/0743-7315(89)90021-X
Daubechies, 1992
Deng, 1994, Molecular dynamics for 400 million particles with short-range interactions
Ding, 1992, The reduced cell multipole method for Coulombic interactions in periodic systems with million-atom unit cell, Chem. Phys. Lett., 196, 6, 10.1016/0009-2614(92)85920-6
Fox, 1994
Fricke, 1990, SiO2-aerogel: Modifications and applications, J. Non-Cryst. Solids, 121, 188, 10.1016/0022-3093(90)90129-A
Geist, 1994
Gillan, 1994, First-principles calculations on materials using massively parallel computing, Future Generation Comput. Syst., 10, 213, 10.1016/0167-739X(94)90020-5
Grama, 1994, Scalable parallel formulation of the Barnes-Hut method for N-body simulations
Greengard, 1987, A fast algorithm for particle simulations, J. Comput. Phys., 73, 325, 10.1016/0021-9991(87)90140-9
Gropp, 1994
Gropp, 1994
Gygi, 1993, Electronic-structure calculations in adaptive coordinates, Phys. Rev., B 48, 11692, 10.1103/PhysRevB.48.11692
Heirich, 1995, A parabolic load balancing method, 192
Hendrickson, 1992, An improved spectral graph partitioning algorithm for mapping parallel computations, 10.2172/6970738
Horton, 1993, A multi-level diffusion method for dynamic load balancing, Parallel Comput., 19, 209, 10.1016/0167-8191(93)90050-U
Hwang, 1995, A data-parallel implementation of molecular dynamics programs for distributed memory machines, 28
Jones, 1993, Computation of equilibrium vortex structures for type-II superconductors, Int. J. Supercomputer Appl., 7, 129, 10.1177/109434209300700204
Kalia, 1993, Molecular-dynamics simulations of Coulombic systems on distributed-memory MIMD machines, Comput. Phys. Commun., 74, 316, 10.1016/0010-4655(93)90015-5
Kandel, 1988, Simulations without critical slowing down, Phys. Rev. Lett., 60, 1591, 10.1103/PhysRevLett.60.1591
Kirkpatrick, 1983, Optimization by simulated annealing, Science, 220, 671, 10.1126/science.220.4598.671
Nakano, 1993, Structural correlations in porous silica: Molecular dynamics simulation on a parallel computer, Phys. Rev. Lett., 71, 85, 10.1103/PhysRevLett.71.85
Nakano, 1994, Multiresolution molecular dynamics algorithm for realistic materials modeling on parallel computers, Comput. Phys. Commun., 83, 197, 10.1016/0010-4655(94)90048-5
Nakano, 1994, Growth of pore interfaces and roughness of fracture surfaces in porous silica: Million particle molecular-dynamics simulations, Phys. Rev. Lett., 73, 2336, 10.1103/PhysRevLett.73.2336
Nakano, 1995, Dynamics and morphology of brittle cracks: A molecular-dynamics study of silicon nitride, Phys. Rev. Lett., 75, 3138, 10.1103/PhysRevLett.75.3138
Nakano, 1993, Parallel multiple-time-step molecular dynamics with three-body interaction, Comput. Phys. Commun., 77, 303, 10.1016/0010-4655(93)90178-F
Nelson, 1993, Plane-wave electronic-structure calculations on a parallel supercomputer, Phys. Rev., B, 1765, 10.1103/PhysRevB.47.1765
Nupairoj, 1994, Performance evaluation of some MPI implementations on workstation clusters, 98
Ou, 1993, Fast mapping and remapping algorithm for irregular and adaptive problems, 279
Payne, 1992, Iterative minimization techniques for ab initio total-energy calculations: molecular dynamics and conjugate gradients, Rev. Mod. Phys., 64, 1045, 10.1103/RevModPhys.64.1045
J.R. Pilkington, S.B. Baden, Dynamic partitioning of non-uniform structured workloads with spacefilling curves, IEEE Trans. on Parallel and Distributed Systems, to appear.
Ponnusamy, 1993, Graph contraction and physical optimization methods: A quality-cost tradeoff for mapping data on parallel computers
Rapaport, 1991, Multi-million particle molecular dynamics II. design considerations for distributed processing, Comput. Phys. Commun., 62, 217, 10.1016/0010-4655(91)90096-4
Ribbens, 1991, A moving mesh scheme for adaptive domain decomposition, 205
Siegel, 1994, 65
Singh, 1993, A parallel adaptive fast multipole method, 54
Streett, 1978, Multiple time-step methods in molecular dynamics, Mol. Phys., 35, 639, 10.1080/00268977800100471
Sun, 1991, Toward a better parallel performance metric, Parallel Comput., 17, 1093, 10.1016/S0167-8191(05)80028-6
Tsuruta, 1996, Early stage of sintering of silicon nitride clusters: A molecular dynamics study on parallel machines, Europhys. Lett., 33, 441, 10.1209/epl/i1996-00359-2
Kalia, 1997, Role of ultrafine microstructures in dynamic fracture in nanophase silicon nitride, Phys. Rev. Lett., 78, 2144, 10.1103/PhysRevLett.78.2144
Vashishta, 1994, Computer simulation of materials using parallel architectures, Comput. Mater. Sci., 2, 180, 10.1016/0927-0256(94)90063-9
Vashishta, 1995, Low-energy floppy modes in high-temperature ceramics, Phys. Rev. Lett., 75, 858, 10.1103/PhysRevLett.75.858
Vashishta, 1991, Interatomic potential for SiO2: A molecular dynamics study of structural correlations, Phys. Rev. B, 41, 12197, 10.1103/PhysRevB.41.12197
Warren, 1992, Astrophysical N-body simulations using hierarchical data structures, 570
Warren, 1995, A portable parallel particle program, Comput. Phys. Commun., 87, 266, 10.1016/0010-4655(94)00177-4
Williams, 1991, Peformance of dynamic load balancing algorithms for unstructured mesh calculations, Concurrency, 3, 457, 10.1002/cpe.4330030502