An adaptable navigation strategy for Virtual Microscopy from mobile platforms

Journal of Biomedical Informatics - Tập 54 - Trang 39-49 - 2015
Germán Corredor1, Eduardo Romero1, Marcela Iregui2
1Computer Imaging and Medical Applications Laboratory – CIM@LAB, Universidad Nacional de Colombia, Bogota, Colombia
2Acceder Research Group, Universidad Militar Nueva Granada, Bogota, Colombia

Tài liệu tham khảo

Cooper, 2012, Digital pathology: data-intensive frontier in medical imaging, Proc IEEE, 100, 991, 10.1109/JPROC.2011.2182074 Al-Janabi, 2012, Whole slide images for primary diagnostics of gastrointestinal tract pathology: a feasibility study, Hum Pathol, 43, 702, 10.1016/j.humpath.2011.06.017 Fine, 2008, Evaluation of whole slide image immunohistochemistry interpretation in challenging prostate needle biopsies, Hum Pathol, 39, 564, 10.1016/j.humpath.2007.08.007 Massone, 2007, Feasibility and diagnostic agreement in teledermatopathology using a virtual slide system, Hum Pathol, 38, 546, 10.1016/j.humpath.2006.10.006 Weinstein, 2009, Overview of telepathology, virtual microscopy, and whole slide imaging: prospects for the future, Hum Pathol, 40, 1057, 10.1016/j.humpath.2009.04.006 Pantanowitz, 2011, Review of the current state of whole slide imaging in pathology, J Pathol Inform, 2, 36, 10.4103/2153-3539.83746 Tuominen, 2009, The application of JPEG2000 in virtual microscopy, J Digit Imaging, 22, 250, 10.1007/s10278-007-9090-z Johnson, 2011, Using a visual discrimination model for the detection of compression artifacts in virtual pathology images, IEEE Trans Med Imaging, 30, 306, 10.1109/TMI.2010.2077308 Nkosi M, Mekuria F. Cloud computing for enhanced mobile health applications. In: 2010 IEEE second international conference on cloud computing technology and science (CloudCom); 2010. p. 629–33. http://dx.doi.org/10.1109/CloudCom.2010.31. Alfaro, 2011, Compatibility of virtual microscopy equipment: an analysis of different panoramic image software, Rev Esp Patol, 44, 8 Aperio Technologies Inc. Aperio image analysis; 2009. <http://tmalab.jhmi.edu/aperiou/userguides/Image_Analysis_UG.pdf>. Goode, 2013, OpenSlide: a vendor-neutral software foundation for digital pathology, J Pathol Inform, 4, 27, 10.4103/2153-3539.119005 Institute for Innovations in Medical Education. NYU virtual microscope. <http://education.med.nyu.edu/virtualmicroscope>. Microsoft Corporation. Deep zoom. <http://www.microsoft.com/silverlight/deep-zoom/>. Hadwiger, 2012, Interactive volume exploration of petascale microscopy data streams using a visualization-driven virtual memory approach, IEEE Trans Vis Comput Graph, 18, 2285, 10.1109/TVCG.2012.240 Rojo, 2006, Critical comparison of 31 commercially available digital slide systems in pathology, Int J Surg Pathol, 14, 285, 10.1177/1066896906292274 Rosenbaum R, Schumann H. JPEG2000-based viewer guidance for mobile image browsing. In: 2006 12th International multi-media modelling conference proceedings; 2006. http://dx.doi.org/10.1109/MMMC.2006.1651319. Taubman, 2001 Taubman D, Rosenbaum R. Rate-distortion optimized interactive browsing of JPEG2000 images. In: Proceedings. 2003 international conference on image processing, 2003. ICIP 2003, vols. 2, 3; 2003. p. III–765–8. http://dx.doi.org/10.1109/ICIP.2003.1247357. Pitzalis D, Pillay R, Lahanier C. A new concept in high resolution internet image browsing. In: Proceedings of the conference on electronic publishing; 2006. Chute R, de Sompel HV. Introducing Djatoka. A reuse friendly, open source JPEG 2000 image server. D-Lib Mag 14(9). Lundin M, Lundin J, Konsti J, Isola J. Web microscope. <http://www.webmicroscope.net/>. Iregui, 2007, Strategies for efficient virtual microscopy in pathological samples using JPEG2000, Micron, 38, 700, 10.1016/j.micron.2007.04.008 Gómez, 2007, Virtual microscopy using JPEG2000, vol. 4673, 181 Gómez, 2011, A soft-cache strategy for pathologist’s navigation in virtual microscopy, Microsc Res Tech, 74, 401, 10.1002/jemt.20923 Skodras, 2001, The JPEG 2000 still image compression standard, IEEE Signal Process Mag, 18, 36, 10.1109/79.952804 Taubman D. Remote browsing of JPEG2000 images. In: Proc IEEE int conf image proc, vol. 1; 2002. p. 229–32. Noumeir, 2011, Using JPEG 2000 interactive protocol to stream a large image or a large image set, J Digit Imaging, 24, 833, 10.1007/s10278-010-9343-0 Taubman, 2003, Architecture, philosophy and performance of JPIP: Internet protocol standard for JPEG2000, Proc SPIE, 5150, 791, 10.1117/12.502889 ISO/IEC, 15444-1. information technology – JPEG2000 image coding system – Part 1: core coding system; 2000. ISO/IEC, 15444-9. information technology – JPEG2000 image coding system – Part 9: interactivity tools, apis and protocols; 2004. Sarraf C, Wakim R. Improving JPEG 2000 images delivery over GPRS mobile networks. In: Proceedings of the 6th WSEAS int conf on electronics, hardware, wireless and optical communications; 2007. Descampe, 2007, Pre-fetching and caching strategies for remote and interactive browsing of JPEG2000 images, IEEE Trans Image Process, 16, 1339, 10.1109/TIP.2007.894258 Google Inc. Adding photooverlays (google earth api documentation). <https://developers.google.com/kml/documentation/photos?hl=en>. Taubman D. Kakadu software. <http://www.kakadusoftware.com/>. Adams M, Kossentini F. JasPer: a software-based JPEG-2000 codec implementation. <http://www.ece.uvic.ca/frodo/jasper/>. Intel Corp. Performance tools for software developers – application notes – intel IPP JPEG2000 and JasPer in KSquirrel. <http://software.intel.com/en-us/articles/performance-tools-for-software-developers-application-notes-intel-ipp-jpeg2000-and-jasper-in-ksquirrel>. Stoner R. Wholeslide IOS application. <http://wholeslide.com/>. Ramey J, Fung K, Hassell L. Use of mobile high-resolution device for remote frozen section evaluation of whole slide images. J Pathol Inform 2(41). http://dx.doi.org/10.4103/2153-3539.84276. Kim, 2011, A mobile tele-radiology imaging system with JPEG2000 for an emergency care, J Digit Imaging, 24, 709, 10.1007/s10278-010-9335-0 Iregui M, Chevalier P, Macq B. Optimal caching mechanisms for JPEG2000 communications. In: EUSIPCO – European signal processing conference, vol. 3; 2002. p. 201–4. Bartrina-Rapesta, 2011, JPEG2000 ROI coding through component priority for digital mammography, Comput Vis Image Understand, 115, 59, 10.1016/j.cviu.2010.09.008 Maglogiannis, 2009, Wavelet-based compression with ROI coding support for mobile access to DICOM images over heterogeneous radio networks, IEEE Trans Inform Technol Biomed, 13, 458, 10.1109/TITB.2008.903527 Gibson, 2004, A wavelet-based region of interest encoder for the compression of angiogram video sequences, IEEE Trans Inform Technol Biomed, 8, 103, 10.1109/TITB.2004.826722 Tahoces, 2008, Image compression: Maxshift ROI encoding options in JPEG2000, Comput Vis Image Understand, 109, 139, 10.1016/j.cviu.2007.07.001 Gutierrez, 2011, A supervised visual model for finding regions of interest in basal cell carcinoma images, Diagn Pathol, 6, 26, 10.1186/1746-1596-6-26 Gutierrez, 2013, A visual model approach to extract regions of interest in microscopical images of basal cell carcinoma, Diagn Pathol, 8, S36, 10.1186/1746-1596-8-S1-S36