An Allele of RFA1 Suppresses RAD52-Dependent Double-Strand Break Repair in Saccharomyces cerevisiae

Genetics - Tập 151 Số 2 - Trang 447-458 - 1999
Julianne Smith1, Rodney Rothstein2
1Department of Genetics and Development, Columbia University College of Physician and Surgeons, New York, New York 10032-2704, USA.
2Department of Genetics and Development, Columbia University College of Physician and Surgeons, New York, New York 10032-2704

Tóm tắt

Abstract An allele of RFA1, the largest subunit of the single-stranded DNA-binding complex RP-A, was identified as a suppressor of decreased direct-repeat recombination in rad1 rad52 double mutants. In this study, we used two LEU2 direct-repeat assays to investigate the mechanism by which the rfa1-D228Y allele increases recombination. We found that both intrachromatid and sister chromatid recombination are stimulated in rfa1-D228Y strains. In a rad1 rad52 background, however, the majority of the increased recombination is caused by stimulation of deletion events by an intrachromatid recombination mechanism that is likely to be single-strand annealing. Studies in which an HO endonuclease cut was introduced between the two leu2 copies indicate that the rfa1-D228Y mutation partially suppresses the rad52 defect in recovering recombination products. Furthermore, molecular analysis of processing and product formation kinetics reveals that, in a rad52 background, the rfa1-D228Y mutation results in increased levels of recombinant products and the disappearance of large single-stranded intermediates characteristic of rad52 strains. On the basis of these results, we propose that in the absence of wild-type Rad52, the interaction of RP-A with single-stranded DNA inhibits strand annealing, and that this inhibition is overcome by the rfa1-D228Y mutation.

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Tài liệu tham khảo

Bardwell, 1992, Stable and specific association between the yeast recombination and DNA repair proteins RAD1 and RAD10 in vitro, Mol. Cell. Biol., 12, 3041

Baudin, 1993, A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae, Nucleic Acids Res., 21, 3329, 10.1093/nar/21.14.3329

Benson, 1998, Synergistic actions of Rad51 and Rad52 in recombination and DNA repair, Nature, 391, 401, 10.1038/34937

Boeke, 1984, A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance, Mol. Gen. Genet., 197, 342, 10.1007/BF00330984

Bollag, 1991, Direct-repeat analysis of chromatid interactions during intrachromosomal recombination in mouse cells, Mol. Cell. Biol., 11, 4839

Brill, 1991, Replication factor-A from Saccharomyces cerevisiae is encoded by three essential genes coordinately expressed at S phase, Genes Dev., 5, 1589, 10.1101/gad.5.9.1589

Caskey, 1992, Triple repeat mutations in human disease, Science, 256, 784, 10.1126/science.256.5058.784

Christiansen, 1977, Catalysis of DNA reassociation by the Escherichia coli DNA binding protein: a polyamine-dependent reaction, J. Mol. Biol., 115, 441, 10.1016/0022-2836(77)90164-4

D'Andrea, 1997, Molecular biology of Fanconi anemia: implications for diagnosis and therapy, Blood, 90, 1725, 10.1182/blood.V90.5.1725

Edelman, 1970, Arrangement and Evolution of Eukaryotic Genes.

Fan, 1996, Mutations in the RNA polymerase II transcription machinery suppress the hyperrecombination mutant hpr1 delta of Saccharomyces cerevisiae, Genetics, 142, 749, 10.1093/genetics/142.3.749

Feinberg, 1983, A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity, Anal. Biochem., 132, 6, 10.1016/0003-2697(83)90418-9

Fishman-Lobell, 1992, Removal of nonhomologous DNA ends in double-strand break recombination: the role of the yeast ultraviolet repair gene RAD1, Science, 258, 480, 10.1126/science.1411547

Fishman-Lobell, 1992, Two alternative pathways of double-strand break repair that are kinetically separable and independently modulated, Mol. Cell. Biol., 12, 1292

Fu, 1991, Variation of the CGG repeat at the fragile X site results in genetic instability: resolution of the Sherman paradox, Cell, 67, 1047, 10.1016/0092-8674(91)90283-5

Fu, 1992, An unstable triplet repeat in a gene related to myotonic muscular dystrophy, Science, 255, 1256, 10.1126/science.1546326

Fukuchi, 1989, Mutator phenotype of Werner syndrome is characterized by extensive deletions, Proc. Natl. Acad. Sci. USA, 86, 5893, 10.1073/pnas.86.15.5893

Game, 1971, Allelism tests of mutants affecting sensitivity to radiation in yeast and a proposed nomenclature, Mutat. Res., 6, 37

Gangloff, 1996, Gene conversion plays the major role in controlling the stability of large tandem repeats in yeast, EMBO J., 15, 1715, 10.1002/j.1460-2075.1996.tb00517.x

Gietz, 1992, Improved method for high efficiency transformation of intact yeast cells, Nucleic Acids Res., 20, 1425, 10.1093/nar/20.6.1425

Haber, 1985, RAD52-independent mitotic gene conversion in Saccharomyces cerevisiae frequently results in chromosomal loss, Genetics, 111, 7, 10.1093/genetics/111.1.7

Haluska, 1986, The t(8; 14) chromosomal translocation occurring in B-cell malignancies results from mistakes in V-D-J joining, Nature, 324, 158, 10.1038/324158a0

Harley, 1992, Expansion of an unstable DNA region and phenotypic variation in myotonic dystrophy, Nature, 355, 545, 10.1038/355545a0

Heyer, 1990, An essential Saccharomyces cerevisiae single-stranded DNA binding protein is homologous to the large subunit of human RP-A, EMBO J., 9, 2321, 10.1002/j.1460-2075.1990.tb07404.x

Hoekstra, 1986, Properties of spontaneous mitotic recombination occurring in the presence of the rad52-1 mutation of Saccharomyces cerevisiae, Genet. Res., 48, 9, 10.1017/S0016672300024599

Hoffman, 1987, A ten-minute DNA preparation efficiently releases autonomous plasmids for transformation of Escherichia coli, Gene, 57, 267, 10.1016/0378-1119(87)90131-4

Huntington's Disease Collaborative Research Group, 1993, A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes, Cell, 72, 971, 10.1016/0092-8674(93)90585-E

Ivanov, 1995, RAD1 and RAD10, but not other excision repair genes, are required for double-strand break-induced recombination in Saccharomyces cerevisiae, Mol. Cell. Biol., 15, 2245, 10.1128/MCB.15.4.2245

Jackson, 1981, Gene conversion between duplicated genetic elements in yeast, Nature, 292, 306, 10.1038/292306a0

Jensen, 1984, Directionality and regulation of cassette substitution in yeast, Cold Spring Harbor Symp. Quant. Biol., 49, 97, 10.1101/SQB.1984.049.01.013

Jinks-Robertson, 1986, Chromosomal translocations generated by high-frequency meiotic recombination between repeated yeast genes, Genetics, 114, 731, 10.1093/genetics/114.3.731

Klein, 1988, Different types of recombination events are controlled by the RAD1 and RAD52 genes of Saccharomyces cerevisiae, Genetics, 120, 367, 10.1093/genetics/120.2.367

Klein, 1995, Genetic control of intrachromosomal recombination, Bioessays, 17, 147, 10.1002/bies.950170210

Kostriken, 1983, A site-specific endonuclease essential for mating-type switching in Saccharomyces cerevisiae, Cell, 35, 167, 10.1016/0092-8674(83)90219-2

Lakich, 1993, Inversions disrupting the factor VIII gene are a common cause of severe haemophilia A, Nat. Genet., 5, 236, 10.1038/ng1193-236

Langlois, 1989, Evidence for increased in vivo mutation and somatic recombination in Bloom's syndrome, Proc. Natl. Acad. Sci. USA, 86, 670, 10.1073/pnas.86.2.670

La Spada, 1991, Androgen receptor gene mutations in X-linked spinal and bulbar muscular atrophy, Nature, 352, 77, 10.1038/352077a0

Lea, 1949, The distribution in the numbers of mutants in bacterial populations, J. Genet., 49, 264, 10.1007/BF02986080

Lehrman, 1986, Exon-Alu recombination deletes 5 kilobases from the low density lipoprotein receptor gene, producing a null phenotype in familial hypercholesterolemia, Proc. Natl. Acad. Sci. USA, 83, 3679, 10.1073/pnas.83.11.3679

Malone, 1980, The RAD52 gene is required for homothallic interconversion of mating types and spontaneous mitotic recombination in yeast, Proc. Natl. Sci. USA, 77, 503, 10.1073/pnas.77.1.503

Malone, 1988, A reexamination of the role of the RAD52 gene in spontaneous mitotic recombination, Curr. Genet., 14, 211, 10.1007/BF00376741

McDonnell, 1977, Analysis of restriction fragments of T7 DNA and determination of molecular weights by electrophoresis in neutral and alkaline gels, J. Mol. Biol., 110, 119, 10.1016/S0022-2836(77)80102-2

Melton, 1984, Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter, Nucleic Acids Res., 12, 7035, 10.1093/nar/12.18.7035

Meyn, 1993, High spontaneous intrachromosomal recombination rates in ataxia-telangiectasia, Science, 260, 1326, 10.1126/science.8493577

Monnat, 1992, Werner syndrome: molecular genetic and mechanistic hypotheses, Exp. Gerontol., 27, 447, 10.1016/0531-5565(92)90080-J

Mortensen, 1996, DNA strand annealing is promoted by the yeast Rad52 protein, Proc. Natl. Acad. Sci. USA, 93, 10729, 10.1073/pnas.93.20.10729

Nassif, 1994, Efficient copying of nonhomologous sequences from ectopic sites via P-element-induced gap repair, Mol. Cell. Biol., 14, 1613

New, 1998, Rad52 protein stimulates DNA strand exchange by Rad51 and replication protein A, Nature, 391, 407, 10.1038/34950

Orr-Weaver, 1981, Yeast transformation: a model system for the study of recombination, Proc. Natl. Acad. Sci. USA, 78, 6354, 10.1073/pnas.78.10.6354

Ozenberger, 1991, A unique pathway of double-strand break repair operates in tandemly repeated genes, Mol. Cell. Biol., 11, 1222

Paâques, 1998, Expansions and contractions in a tandem repeat induced by double-strand break repair, Mol. Cell. Biol., 18, 2045, 10.1128/MCB.18.4.2045

Prado, 1995, Role of reciprocal exchange, oneended invasion crossover and single-strand annealing on inverted and direct repeat recombination in yeast: different requirements for the RAD1, RAD10, and RAD52 genes, Genetics, 139, 109, 10.1093/genetics/139.1.109

Resnick, 1969, Genetic control of radiation sensitivity in Saccharomyces cerevisiae, Genetics, 62, 519, 10.1093/genetics/62.3.519

Resnick, 1976, The repair of double-strand breaks in the nuclear DNA of Saccharomyces cerevisiae and its genetic control, Mol. Gen. Genet., 143, 119, 10.1007/BF00266917

Reynolds, 1981, Molecular mechanisms of pyrimidine dimer excision in Saccharomyces cerevisiae: incision of ultraviolet-irradiated deoxyribonucleic acid in vivo, J. Bacteriol., 146, 692, 10.1128/jb.146.2.692-704.1981

Rudin, 1988, Efficient repair of HO-induced chromosomal breaks in Saccharomyces cerevisiae by recombination between flanking homologous sequences, Mol. Cell. Biol., 8, 3918

Sambrook, 1989, Molecular Cloning: A Laboratory Manual.

Schiestl, 1988, RAD1, an excision repair gene of Saccharomyces cerevisiae, is also involved in recombination, Mol. Cell. Biol., 8, 3619

Sherman, 1991, Getting started with yeast, Guide to Yeast Genetics and Molecular Biology, 3, 10.1016/0076-6879(91)94004-V

Sherman, 1986, Methods in Yeast Genetics.

Shinohara, 1998, Stimulation by Rad52 of yeast Rad52-mediated recombination, Nature, 391, 404, 10.1038/34943

Smith, 1995, A mutation in the gene encoding the Saccharomyces cerevisiae single-stranded DNA-binding protein Rfa1 stimulates a RAD52-independent pathway for directrepeat recombination, Mol. Cell. Biol., 15, 1632, 10.1128/MCB.15.3.1632

Smith, 1995, PCR-based gene disruption in Saccharomyces cerevisiae, Methods Mol. Cell. Biol., 5, 270

Southern, 1975, Detention of specific sequences among DNA fragments separated by gel electrophoresis, J. Mol. Biol., 98, 503, 10.1016/S0022-2836(75)80083-0

Sugawara, 1992, Characterization of double-strand break-induced recombination: homology requirements and single-stranded DNA formation, Mol. Cell. Biol., 12, 563

Sung, 1997, Function of yeast Rad52 protein as a mediator between replication protein A and the Rad51 recombinase, J. Biol. Chem., 272, 28194, 10.1074/jbc.272.45.28194

Sung, 1997, Yeast Rad55 and Rad57 proteins form a heterodimer that functions with replication protein A to promote DNA strand exchange by Rad51 recombinase, Genes Dev., 11, 1111, 10.1101/gad.11.9.1111

Thomas, 1989, Elevated recombination rates in transcriptionally active DNA, Cell, 56, 619, 10.1016/0092-8674(89)90584-9

Thomas, 1989, The genetic control of direct-repeat recombination in Saccharomyces: the effect of rad52 and rad1 on mitotic recombination at GAL10, a transcriptionally regulated gene, Genetics, 123, 725, 10.1093/genetics/123.4.725

Tomkinson, 1993, Yeast DNA repair and recombination proteins Rad1 and Rad10 constitute a single-stranded-DNA endonuclease, Nature, 362, 860, 10.1038/362860a0

White, 1990, Intermediates of recombination during mating type switching in Saccharomyces cerevisiae, EMBO J., 9, 663, 10.1002/j.1460-2075.1990.tb08158.x