Amino acid nitrogen trends in paddy soils under long-term rice cultivation in southeast coast of China

Ai, 2012, Responses of extracellular enzyme activities and microbial community in both the rhizosphere and bulk soil to long-term fertilization practices in a fluvo-aquic soil, Geoderma, 173–174, 330, 10.1016/j.geoderma.2011.07.020 Amelung, 2003, Nitrogen biomarkers and their fate in soil, J. Plant Nutr. Soil Sci., 166, 677, 10.1002/jpln.200321274 Amelung, 2008, Combining biomarker with stable isotope analyses for assessing the transformation and turnover of soil organic matter, Adv. Agron., 100, 155, 10.1016/S0065-2113(08)00606-8 Amelung, 2001, Determination of amino acid enantiomers in soils, Soil Biol. Biochem., 33, 553, 10.1016/S0038-0717(00)00195-4 Amelung, 2006, Amino acids in grassland soils: Climatic effects on concentrations and chirality, Geoderma, 130, 207, 10.1016/j.geoderma.2005.01.017 Bannert, 2011, Changes in diversity and functional gene abundances of microbial communities involved in nitrogen fixation, nitrification and denitrification in a tidal wetland versus paddy soils cultivated for different time periods, Appl. Environ. Microbiol., 77, 6109, 10.1128/AEM.01751-10 Blair, 1985, Carbon isotopic fractionation in heterotrophic microbial metabolism, Appl. Environ. Microbiol., 50, 996, 10.1128/aem.50.4.996-1001.1985 Cao, 1984, Effect of Placement Methods on Floodwater Properties and Recovery of Applied Nitrogen (15N-Labeled Urea) in Wetland Rice, Soil Sci. Soc. Am. J., 48, 196, 10.2136/sssaj1984.03615995004800010036x Cao, 2006, Ancient paddy soils from the Neolithic age in China’s Yangtze River Delta, Naturwissenschaften, 93, 232, 10.1007/s00114-006-0083-4 Cassman, 1996, Nitrogen-use efficiency in tropical lowland rice systems: Contributions from indigenous and applied nitrogen, Field Crops Res., 47, 1, 10.1016/0378-4290(95)00101-8 Chapin, 1993, Preferential use of organic nitrogen for growth by a non-mycorrhizal arctic sedge, Nature, 361, 150, 10.1038/361150a0 Cui, 2012, Bacterial succession during 500 years of soil development under agricultural use, Ecol. Res., 27, 793, 10.1007/s11284-012-0955-3 Dı́ez, 2001, Compositional and nutritional studies on two wild edible mushrooms from northwest Spain, Food Chem., 75, 417, 10.1016/S0308-8146(01)00229-1 Dittmar, 2001, Origin and biogeochemical cycling of organic nitrogen in the eastern arctic ocean as evident from D-and L-amino acids, Geochim. Cosmochim. Acta, 65, 4103, 10.1016/S0016-7037(01)00688-3 Dong, 2014, Changes in soil microbial community composition in response to fertilization of paddy soils in subtropical China, Appl. Soil Ecol., 84, 140, 10.1016/j.apsoil.2014.06.007 Duchicela, 2013, Soil aggregate stability increase is strongly related to fungal community succession along an abandoned agricultural field chronosequence in the Bolivian altiplano, J. Appl. Ecol., 50, 1266, 10.1111/1365-2664.12130 Fageria, 2015, 285 Fischer, 1998, Amino acid transport in plants, Trends Plant Sci., 3, 188, 10.1016/S1360-1385(98)01231-X Friedel, 2002, Composition of hydrolysable amino acids in soil organic matter and soil microbial biomass, Soil Biol. Biochem., 34, 315, 10.1016/S0038-0717(01)00185-7 Fukumorita, 1982, Sugar, amino acid and inorganic contents in rice phloem sap, Plant Cell Physiol., 23, 273 Ge, 2009, Geographical and climatic differences in long-term effect of organic and inorganic amendments on soil enzymatic activities and respiration in field experimental stations of China, Ecol. Complexity, 6, 421, 10.1016/j.ecocom.2009.02.001 Grutters, 2002, Preservation of amino acids from in situ-produced bacterial cell wall peptidoglycans in northeastern Atlantic continental margin sediments, Limnol. Oceanogr., 47, 1521, 10.4319/lo.2002.47.5.1521 Hao, 2008, Effect of long-term application of inorganic fertilizer and organic amendments on soil organic matter and microbial biomass in three subtropical paddy soils, Nutr. Cycl. Agroecosyst., 81, 17, 10.1007/s10705-007-9145-z Hedges, 1987, Amino acid adsorption by clay minerals in distilled water, Geochim. Cosmochim. Acta, 51, 255, 10.1016/0016-7037(87)90237-7 Henry, 2002, Free amino acid, ammonium and nitrate concentrations in soil solutions of a grazed coastal marsh in relation to plant growth, Plant, Cell Environ., 25, 665, 10.1046/j.1365-3040.2002.00849.x Hill, 2019, Hotspots and hot moments of amino acid n in soil: real-time insights using continuous microdialysis sampling, Soil Biol. Biochem., 131, 40, 10.1016/j.soilbio.2018.12.026 Hofmockel, 2010, Amino acid abundance and proteolytic potential in North American soils, Oecologia, 163, 1069, 10.1007/s00442-010-1601-9 Horwath, W., 2015. Carbon cycling: The dynamics and formation of organic matter. In: Paul, E.A. (Ed.), Soil Microbiology, Ecology, and Biochemistry, 4th ed., pp. 339–382. Houtermans, 2017, Nitrogen sequestration under long-term paddy management in soils developed on contrasting parent material, Biol. Fertil. Soils, 53, 837, 10.1007/s00374-017-1223-z Huggett, 1998, Soil chronosequences, soil development, and soil evolution: A critical review, Catena, 32, 155, 10.1016/S0341-8162(98)00053-8 Inselsbacher, 2012, The below-ground perspective of forest plants: soil provides mainly organic nitrogen for plants and mycorrhizal fungi, New Phytol., 195, 329, 10.1111/j.1469-8137.2012.04169.x Inselsbacher, 2014, Early season dynamics of soil nitrogen fluxes in fertilized and unfertilized boreal forests, Soil Biol. Biochem., 74, 167, 10.1016/j.soilbio.2014.03.012 Iovieno, 2009, Effect of organic and mineral fertilizers on soil respiration and enzyme activities of two mediterranean horticultural soils, Biol. Fertil. Soils, 45, 555, 10.1007/s00374-009-0365-z Jones, 2005, Rapid intrinsic rates of amino acid biodegradation in soils are unaffected by agricultural management strategy, Soil Biolo. Biochem., 37, 1267, 10.1016/j.soilbio.2004.11.023 Jones, 2002, Soil amino acid turnover dominates the nitrogen flux in permafrost-dominated taiga forest soils, Soil Biol. Biochem., 34, 209, 10.1016/S0038-0717(01)00175-4 Jones, 2009, Carbon flow in the rhizosphere: carbon trading at the soil-root interface, Plant Soil, 321, 5, 10.1007/s11104-009-9925-0 Jones, 2005, An assessment of the microbial contribution to aquatic dissolved organic nitrogen using amino acid enantiomeric ratios, Organic Geochem., 36, 1099, 10.1016/j.orggeochem.2004.11.008 Kandeler, 1988, Short-Term Assay of Soil Urease Activity Using Colorimetric Determination of Ammonium, Biol. Fertil. Soils, 6, 68, 10.1007/BF00257924 Kielland, 1994, Amino Acid Absorption by Arctic Plants: Implications for Plant Nutrition and Nitrogen Cycling, Ecology, 75, 2373, 10.2307/1940891 Kielland, 1995, Landscape patterns of free amino acids in arctic tundra soils, Biogeochem., 31, 85, 10.1007/BF00000940 2004 Kögel-Knabner, 2010, Biogeochemistry of paddy soils, Geoderma, 157, 1, 10.1016/j.geoderma.2010.03.009 Kotroczó, 2014, Soil enzyme activity in response to long-term organic matter manipulation, Soil Biol. Biochem., 70, 237, 10.1016/j.soilbio.2013.12.028 Kuzyakov, 2000, Carbon input by plants into the soil: review, J. Plant Nutri. Soil Sci., 163, 421, 10.1002/1522-2624(200008)163:4<421::AID-JPLN421>3.0.CO;2-R Kuzyakov, 2013, Competition between roots and microorganisms for nitrogen: mechanisms and ecological relevance, New Phytol., 198, 656, 10.1111/nph.12235 Lai, 2015, Occurrence of aflatoxins and ochratoxin A in rice samples from six provinces in China, Food Control., 50, 401, 10.1016/j.foodcont.2014.09.029 Lennartz, 2009, Ecological safe management of terraced rice paddy landscapes, Soil Till. Res., 102, 179, 10.1016/j.still.2008.07.010 Li, 2010, Effects of long-term chemical fertilization and organic amendments on dynamics of soil organic C and total N in paddy soil derived from barren land in subtropical China, Soil Till. Res., 106, 268, 10.1016/j.still.2009.12.008 Lomstein, 2006, Amino acid biogeo- and stereochemistry in coastal Chilean sediments, Geochim. Cosmochim. Acta, 70, 2970, 10.1016/j.gca.2006.03.015 Lynch, 1990, Substrate flow in the rhizosphere, Plant Soil, 129, 1, 10.1007/BF00011685 Mbuthia, 2015, Long term tillage, cover crop, and fertilization effects on microbial community structure, activity: implications for soil quality, Soil Biol. Biochem., 89, 24, 10.1016/j.soilbio.2015.06.016 McCarthy, 2007, Amino acid nitrogen isotopic fractionation patterns as indicators of heterotrophy in plankton, particulate, and dissolved organic matter, Geochim. Cosmochim. Acta, 71, 4727, 10.1016/j.gca.2007.06.061 Menichetti, 2015, Thermal sensitivity of enzyme activity in tropical soils assessed by the Q10 and equilibrium model, Biol. Fertil. Soils, 51, 299, 10.1007/s00374-014-0976-x Michalzik, 1999, Dynamics of dissolved organic nitrogen and carbon in a central european norway spruce ecosystem, Eur. J. Soil. Sci., 50, 579, 10.1046/j.1365-2389.1999.00267.x Nakahara, 2016, Stability of soil organic matter accumulated under long-term use as a rice paddy, J. Geophys. Res. Biogeosci., 121, 67, 10.1002/2015JG003104 Näsholm, 1994, Accumulation of amino acids in some boreal forest plants in response to increased nitrogen availability, New Phytol., 126, 137, 10.1111/j.1469-8137.1994.tb07539.x Näsholm, 2009, Uptake of organic nitrogen by plants, New Phytol., 182, 31, 10.1111/j.1469-8137.2008.02751.x Nayak, 2007, Long-term application of compost influences microbial biomass and enzyme activities in a tropical aeric endoaquept planted to rice under flooded condition, Soil Biol. Biochem., 39, 1897, 10.1016/j.soilbio.2007.02.003 Neill, 1999, Nitrogen dynamics in amazon forest and pasture soils measured by 15N pool dilution, Soil Biol. Biochem., 31, 567, 10.1016/S0038-0717(98)00159-X Neufeldt, 2002, Texture and land-use effects on soil organic matter in cerrado oxisols, central Brazil, Geoderma, 107, 151, 10.1016/S0016-7061(01)00145-8 Németh, 1988, Organic nitrogen compounds extracted from arable and forest soils by electro-ultrafiltration and recovery rates of amino acids, Biol. Fert. Soils, 5, 271, 10.1007/BF00262130 Ohlson, 1995, Accumulation of Amino Acids in Forest Plants in Relation to Ecological Amplitude and Nitrogen Supply, Functional Ecol., 9, 596, 10.2307/2390150 Pan, 2009, Combined inorganic/organic fertilization enhances N efficiency and increases rice productivity through organic carbon accumulation in a rice paddy from the Tai Lake region, China. Agric. Ecosys. Environ., 131, 274, 10.1016/j.agee.2009.01.020 Penkman, 2017, Amino Acid Racemization, 14 Petersen, 2012, Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in alaska, Environ. Microbiol., 14, 993, 10.1111/j.1462-2920.2011.02679.x Piotrowska, 2012, Effects of catch crops cultivated for green manure and mineral nitrogen fertilization on soil enzyme activities and chemical properties, Geoderma, 189–190, 72, 10.1016/j.geoderma.2012.04.018 Pittelkow, 2012, Agronomic productivity and nitrogen requirements of alternative tillage and crop establishment systems for improved weed control in direct-seeded rice, Field Crops Res., 130, 128, 10.1016/j.fcr.2012.02.011 Raab, 1996, Non-mycorrhizal uptake of amino acids by roots of the alpine sedge Kobresia myosuroides: Implications for the alpine nitrogen cycle, Oecologia, 108, 488, 10.1007/BF00333725 Raab, 1999, Soil amino acid utilization among species of the Cyperaceae: Plant and soil processes, Ecology, 80, 2408, 10.1890/0012-9658(1999)080[2408:SAAUAS]2.0.CO;2 Radkov, 2014, Bacterial synthesis of D-amino acids, Appl. Microbiol. Biotechnol., 98, 5363, 10.1007/s00253-014-5726-3 Roth, 2011, Accumulation of nitrogen and microbial residues during 2000 years of rice paddy and non-paddy soil development in the Yangtze River Delta, China. Glob. Change Biol., 17, 3405, 10.1111/j.1365-2486.2011.02500.x Roth, 2013, Cycling of rice rhizodeposits through peptide-bound amino acid enantiomers in soils under 50 and 2000 years of paddy management, Soil Biol. Biochem., 65, 227, 10.1016/j.soilbio.2013.05.026 Rothstein, 2009, Soil amino-acid availability across a temperate-forest fertility gradient, Biogeochemistry., 92, 201, 10.1007/s10533-009-9284-1 Różycki, 1986, Free amino acids production by actinomycetes, isolated from soil, rhizosphere, and mycorrhizosphere of pine (Pinns sylvestris L.), Zentralblatt für Mikrobiol., 141, 423, 10.1016/S0232-4393(86)80032-4 Schimel, 2004, Nitrogen mineralization: Challenges of a changing paradigm, Ecology, 85, 591, 10.1890/03-8002 Schulten, 1997, The chemistry of soil organic nitrogen: a review, Biol. Fertil. Soils, 26, 1, 10.1007/s003740050335 Schultz, 2003, Analysis of underivatized amino acids and their D/L-enantiomers by sheathless capillary electrophoresis/electrospray ionization-mass spectrometry, Anal. Chem., 75, 1508, 10.1021/ac0263925 Sowden, 1977, The nitrogen distribution in soils formed under widely differing climatic conditions, Geochim. Cosmochim. Acta, 41, 1524, 10.1016/0016-7037(77)90257-5 Stevenson, 1956, Effect of some long-time rotations on the amino acid composition of the soil, Soil Sci. Soc. Am. J., 20, 204, 10.2136/sssaj1956.03615995002000020017x Su, 2015, Long-term balanced fertilization increases the soil microbial functional diversity in a phosphorus - limited paddy soil, Mol. Ecol., 24, 136, 10.1111/mec.13010 Suthhof, 2000, Nature of organic matter in surface sediments from the pakistan continental margin and the deep Arabian sea: Amino acids, Deep Sea Res., 47, 329, 10.1016/S0967-0645(99)00109-5 Vranova, 2012, The significance of D-amino acids in soil, fate and utilization by microbes and plants: review and identification of knowledge gaps, Plant Soil, 354, 21, 10.1007/s11104-011-1059-5 Walker, 2010, The use of chronosequences in studies of ecological succession and soil development, J. Ecol., 98, 725, 10.1111/j.1365-2745.2010.01664.x Wang, 2017, Soil organic nitrogen composition and mineralization of paddy soils in a cultivation chronosequence in China, J. Soils Sediments, 17, 1588, 10.1007/s11368-016-1629-5 Warren, 2014, Organic N molecules in the soil solution: what is known, what is unknown and the path forwards, Plant Soil, 375, 1, 10.1007/s11104-013-1939-y Weigelt, 2005, Preferential uptake of soil nitrogen forms by grassland plant species, Oecologia, 142, 627, 10.1007/s00442-004-1765-2 Werdin-Pfisterer, 2009, Soil amino acid composition across a boreal forest successional sequence, Soil Biol. Biochem., 41, 1210, 10.1016/j.soilbio.2009.03.001 Wissing, 2011, Organic carbon accumulation in a 2000-year chronosequence of paddy soil evolution, Catena, 87, 376, 10.1016/j.catena.2011.07.007 Xu, 2012, Ammonia volatilization losses from a rice paddy with different irrigation and nitrogen managements, Agric. Water Manage., 104, 184, 10.1016/j.agwat.2011.12.013 Yu, 2002, Contribution of amino compounds to dissolved organic nitrogen in forest soils, Biogeochem., 61, 173, 10.1023/A:1020221528515 Zhang, 2017, Seasonal variations in the soil amino acid pool and flux following the conversion of a natural forest to a pine plantation on the eastern Tibetan Plateau, China, Soil Biol. Biochem., 105, 1, 10.1016/j.soilbio.2016.11.002 Zhao, 1995, Determination of α-dialkylamino acids and their enantiomers in geological samples by high-performance liquid chromatography after derivatization with a chiral adduct of o-phthaldialdehyde, J. Chromatogr. A., 690, 55, 10.1016/0021-9673(94)00927-2 Zhong, 2007, Long-term effects of inorganic fertilizers on microbial biomass and community functional diversity in a paddy soil derived from quaternary red clay, Appl. Soil. Ecol., 36, 84, 10.1016/j.apsoil.2006.12.001