Aligning Short Sequencing Reads with Bowtie

Current Protocols in Bioinformatics - Tập 32 Số 1 - 2010
Ben Langmead1
1Johns Hopkins University, Baltimore, Maryland

Tóm tắt

AbstractThis unit shows how to use the Bowtie package to align short sequencing reads, such as those output by second‐generation sequencing instruments. It also includes protocols for building a genome index and calling consensus sequences from Bowtie alignments using SAMtools. Curr. Protoc. Bioinform. 32:11.7.1‐11.7.14. © 2010 by John Wiley & Sons, Inc.

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Tài liệu tham khảo

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10.1186/gb-2009-10-3-r25

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Langmeadet al. 2009. Seeabove.

http://bowtie‐bio.sf.net

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Current Protocols in Bioinformatics

Tập 32 Số 1

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