Agrowaste bioconversion and microbial fortification have prospects for soil health, crop productivity, and eco-enterprising

Dhananjaya P. Singh1, Ratna Prabha1, Shukla Renu1, Pramod Kumar Sahu1, Vivek Singh1
1ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan, India

Tóm tắt

Agricultural chemicals either used as nutrient inputs for soil fertility or pesticides are creating physicochemical and biological deterioration of the soils and disturbing the agro-ecosystems worldwide. Alarming concerns towards integrated agroecology demand for renewed interest in low-external input-based farming practices. These practices comprise strengthening of soil biological properties, recycling of inherent soil minerals and reuse of agricultural residual wastes. We described approaches for the bioconversion of agricultural residual wastes into value-added compost. The process involves conversion of residual waste into raw compost followed by its fortification with beneficial decomposer microorganisms to produce quality fortified compost product. Finally, incubation of fortified compost with single or consortia of beneficial microorganisms like N-fixers, P-solubilizers or K-mobilizers and biocontrol agents further enriches compost to produce bioorganic products. Bioconversion of agricultural wastes into compost using potential decomposer microorganisms and fortification of decomposed organic matter with beneficial bacterial and fungal species is of immense importance. Additional enrichment of compost with botanicals, humic acid, amino acids, mineral nutrients, phytohormones etc. may also add value to the bioinput products. In an integrated way, on-farm production of raw compost using different agricultural residual wastes and its further fortification with bioorganic farm inputs can help farmers produce value-added compost products for direct application in the crop production. Adoption of microbial bioconversion technologies and their field applications may become eco-enterprising for the rural resource-poor farming communities for enhancing their livelihood along with improving farm productivity and soil health.

Tài liệu tham khảo

Abhilash PC, Dubey RK, Tripathi V, Gupta VK, Singh HB (2016) Plant growth-promoting microorganisms for environmental sustainability. Trends Biotechnol 34:847–850. https://doi.org/10.1016/j.tibtech.2016.05.005 Achinas S, Achinas V, Euverink GJW (2017) A technological overview of biogas production from biowaste. Engineering 3:299–307. https://doi.org/10.1016/J.ENG.2017.03.002 Ahmad R, Jilani G, Arshad M, Zahir ZA, Khalid A (2007) Bio-conversion of organic wastes for their recycling in agriculture: an overview of perspectives and prospects. Ann Microbiol 57:471–479. https://doi.org/10.1007/BF03175343 Ahmad M, Taylor CR, Pink D, Burton KS, Eastwood DC, Bending GD (2010) Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders. Mol Biosyst 6:815–821. https://doi.org/10.1007/BF03175343 Aktar MW, Sengupta D, Chowdhury A (2009) Impact of pesticides use in agriculture: their benefits and hazards. Interdiscip Toxicol 2:1–12. https://doi.org/10.2478/v10102-009-0001-7 Ali SS, Abomohra AEF, Sun J (2017) Effective bio-pretreatment of sawdust waste with a novel microbial consortium for enhanced biomethanation. Bioresour Technol 238:425–432. https://doi.org/10.1016/j.biortech.2017.03.187 Alves MCRA, Record E, Lomascolo A et al (2004) Highly efficient production of laccase by the basidiomycete Pycnoporus cinnabarinus. Appl Environ Microbiol 70:6379–6384. https://doi.org/10.1128/aem.70.11.6379-6384.2004 Anastasi A, Varese GC, Marchisio VF (2005) Isolation and identification of fungal communities in compost and vermicompost. Mycologia 97:33–44. https://doi.org/10.1080/15572536.2006.11832836 Awad NM, Khaled SM (2012) Maximizing effect of mineral fertilizers by compost and biofortified. Aust J Basic Appl Sci 6:482–493 Baig KS, Arshad M, Shaharoona B, Khalid A, Ahmed I (2012) Comparative effectiveness of Bacillus spp. possessing either dual or single growth-promoting traits for improving phosphorus uptake, growth and yield of wheat (Triticum aestivum L.). Ann Microbiol 62:1109–1119. https://doi.org/10.1007/s13213-011-0352-0 Benimelia CS, Castroa GR, Chailec AP, Amoroso MJ (2007) Lindane uptake and degradation by aquatic Streptomyces sp. strain M7. Int Biodeterior Biodegrad 59:148–155. https://doi.org/10.1016/j.ibiod.2006.07.014 Bernal MP, Alburquerque JA, Moral R (2009) Composting of animal manures and chemical criteria for compost maturity assessment. A review. Bioresour Technol 10:5444–5453. https://doi.org/10.1016/j.biortech.2008.11.027 Bertero M, de la Puente G, Sedran U (2012) Fuels from bio-oils: bio-oil production from different residual sources, characterization and thermal conditioning. Fuel 95:263–271. https://doi.org/10.1016/j.fuel.2011.08.041 Bhan S, Behera UK (2014) Conservation agriculture in India—problems, prospects and policy issues. Int Soil Water Conserv Res 2:1–12. https://doi.org/10.1016/S2095-6339(15)30053-8 Bholay A, Borkhataria BV, Jadhav PU, Palekar KS, Dhalkari MV, Nalawade PM (2012) Bacterial lignin peroxidase: a tool for biobleaching and biodegradation of industrial effluents. Univers J Environ Res Technol 2:58–64 Blum WEH (2013) Soil and land resources for agricultural production: general trends and future scenarios—a worldwide perspective. Int Soil Water Conserv Res 1:1–14. https://doi.org/10.1016/S2095-6339(15)30026-5 Bohlke JK (2002) Groundwater recharge and agricultural contamination. Hydrogeol J 10:153–179. https://doi.org/10.1007/s10040-001-0183-3 Boulter JI, Trevors JT, Boland GJ (2002) Microbial studies of compost: bacterial identification, and their potential for turfgrass pathogen suppression. World J Microbiol Biotechnol 18:661–671. https://doi.org/10.1023/A:1016827929432 Branca G, McCarthy N, Lipper L, Jolejole MC (2011) Climate smart agriculture: A synthesis of empirical evidence of food security and mitigation benefits from improved cropland management. Working Paper. Mitigation of Climate Change in Agriculture (MICCA) Programme, FAO, Rome. http://www.fao.org/climatechange/29764-0aa5796a4fb093b6cfdf05558c6dd20bb.pdf. Accessed 21 Dec 2018 Brandelli A, Sala L, Kalil SJ (2015) Microbial enzymes for bioconversion of poultry waste into added-value products. Food Res J 73:2–12. https://doi.org/10.1016/j.foodres.2015.01.015 Bustamante MA, Paredes C, Marhuenda-Egea FC, Pérez-Espinosa A, Bernal MP, Moral R (2008) Co-composting of distillery wastes with animal manures: carbon and nitrogen transformations in the evaluation of compost stability. Chemosphere 72:551–557. https://doi.org/10.1016/j.chemosphere.2008.03.030 Cabuk A, Unal AT, Kolankaya N (2006) Biodegradation of cyanide by a white rot fungus, Trametes versicolor. Biotechnol Lett 28:1313–1317. https://doi.org/10.1007/s10529-006-9090-y Carter MR (2002) Soil quality for sustainable land management: organic matter and aggregation interactions that maintain soil function. Agron J 94:38–47. https://doi.org/10.2134/agronj2002.3800 Celik Y, Peker K (2009) Benefit/cost analysis of mushroom production for diversification of income in developing countries. Bulg J Agric Sci 15:228–237 Chandra R, Raj A, Purohit HJ, Kapley A (2007) Characterization and optimization of three potential aerobic bacterial strains for kraft lignin degradation from pulp paper waste. Chemosphere 67:839–846. https://doi.org/10.1016/j.chemosphere.2006.10.011 Chandra R, Singh R, Yadav S (2012) Effect of bacterial inoculum ratio in mixed culture for decolourization and detoxification of pulp paper mill effluent. J Chem Technol Biotechnol 87:436–444. https://doi.org/10.1002/jctb.2758 Chang ST (2008) Overview of mushroom cultivation and utilization as functional foods. In: Cheung PCK (ed) Mushrooms as functional foods. Wiley, New York, pp 1–32. https://doi.org/10.1002/9780470367285.ch1 Chen Y, Guo R, Li Y-C, Liu H, Zhan TL (2016) A degradation model for high kitchen waste content municipal solid waste. Waste Manag 58:376–385. https://doi.org/10.1016/j.wasman.2016.09.005 Choudhary M, Sharma PC, Jat HS, Nehra V, McDonald AJ, Garg N (2016) Crop residue degradation by fungi isolated from conservation agriculture fields under rice–wheat system of North-West India. Int J Recycl Org Waste Agric 5:349–360. https://doi.org/10.1007/s40093-016-0145-3 Clara L, Fatma R, Viridiana A, Liesl W (2017) Soil organic carbon: the hidden potential. FAO. http://www.fao.org/3/a-i6937e.pdf. Accessed 8 Nov 2018 de Souza WR (2013) Microbial degradation of lignocellulosic biomass. In: Chandel AK, da Silva SS (eds) Sustainable degradation of lignocellulosic biomass—techniques, applications and commercialization. INTECH, Rijieka. https://doi.org/10.5772/54325(ISBN 978-953-51-1119-1) Eida MF, Nagaoka T, Wasaki J, Kouno K (2012) Isolation and characterization of cellulose-decomposing bacteria inhabiting sawdust and coffee residue composts. Microbe Environ 27:226–233. https://doi.org/10.1264/jsme2.ME11299 Erickson MC, Liao J, Ma L, Jiang X, Doyle MP (2009) Inactivation of Salmonella spp. in cow manure composts formulated to different initial C:N ratios. Bioresour Technol 100:5898–5903. https://doi.org/10.1016/j.biortech.2009.06.083 FAO (2017) The future of food and agriculture—trends and challenges, Rome. http://www.fao.org/3/a-i6583e.pdf. Accessed 18 Dec 2018 Fenga CL, Zenga GM, Huanga DL, Hua S, MeiHua Z, Cui L, Huanga C, Weia Z, Li N (2011) Effect of ligninolytic enzymes on lignin degradation and carbon utilization during lignocellulosic waste composting. Process Biochem 46:1515–1520. https://doi.org/10.1016/j.procbio.2011.01.038 Franke-Whittle IH, Confalonieri A, Insam H, lmilch MS, Körner I (2014) Changes in the microbial communities during co-composting of digestates. Waste Manag 34:632–641. https://doi.org/10.1016/j.wasman.2013.12.009 Frison EA, Cherfas J, Hodgkin T (2011) Agricultural biodiversity is essential for a sustainable improvement in food and nutrition security. Sustainability 3:238–253. https://doi.org/10.3390/su3010238 Gaind S, Nain L (2007) Chemical and biological properties of wheat soil in response to paddy straw incorporation and its biodegradation by fungal inoculants. Biodegradation 18:495–503. https://doi.org/10.1007/s10532-006-9082-6 Gajalakshmi S, Abbasi SA (2008) Solid waste management by composting: state of the art. Crit Rev Environ Sci Technol 38:311–340. https://doi.org/10.1080/10643380701413633 Galitskaya P, Biktasheva I, Kuryntseva P, Selivanovskaya S (2016) Suppressive properties of composts may be improved by microbial inoculation. Int J Adv Biotechnol Res 7:773–783 Gattinger A, Muller A, Haeni M, Skinner C, Fliessbach A, Buchmann N, Mäder P, Stolze M, Smith P, El-Hage Scialabba N, Niggli U (2012) Enhanced top soil carbon stocks under organic farming. Proc Nat Acad Sci USA 109:18226–18231. https://doi.org/10.1073/pnas.1209429109 Gautam SP, Bundela PS, Pandey AK, Jamaluddin Awasthi MK, Sarsaiya S (2012) Diversity of cellulolytic microbes and the biodegradation of municipal solid waste by a potential strain. Int J Microbiol. https://doi.org/10.1155/2012/325907(article ID 325907) Gliessman SR, Rosemeyer M (2010) The conversion to sustainable agriculture—principles, processes and practices. CRC Press, Boca Raton Godde CM, Thorburn PJ, Biggs JS, Meier EA (2016) Understanding the impacts of soil, climate, and farming practices on soil organic carbon sequestration: a simulation study in Australia. Front Plant Sci 7:661. https://doi.org/10.3389/fpls.2016.00661 Godfray HCJ, Garnett T (2014) Food security and sustainable intensification. Philos Trans R Soc Lond B Biol Sci 5:369. https://doi.org/10.1098/rstb.2012.0273 Gomez F, Sartaj M (2014) Optimization of field scale biopiles for bioremediation of petroleum hydrocarbon contaminated soil at low temperature conditions by response surface methodology (RSM). Int Biodeterior Biodegrad 89:103–109. https://doi.org/10.1016/j.ibiod.2014.01.010 Gougoulias C, Clark JM, Shaw LJ (2014) The role of soil microbes in the global carbon cycle: tracking the below-ground microbial processing of plant-derived carbon for manipulating carbon dynamics in agricultural systems. J Sci Food Agric 94:2362–2371. https://doi.org/10.1002/jsfa.6577 Han X, Xu C, Dungait JAJ, Bol R, Wang X, Wu W, Meng F (2017) Straw incorporation increases crop yield and soil organic carbon sequestration but varies under different natural conditions and farming practices in China: a system analysis. Biogeosci Discuss. https://www.biogeosciences-discuss.net/bg-2017-493/bg-2017-493.pdf. Accessed 21 Dec 2018 Harazano K, Yamashita M, Shinzato N et al (2003) Isolation and characterization of aromatics degrading microorganisms from the gut of the lower termite Coptotermes formosanus. Biosci Biotechnol Biochem 67:889–892 Himmel ME, Xu Q, Luo Y, Ding S-Y, Lamed R, Bayer EA (2010) Microbial enzyme systems for biomass conversion: emerging paradigms. Biofuels 1:323–341. https://doi.org/10.4155/bfs.09.25 Hobbs PR, Sayre K, Gupta R (2008) The role of conservation agriculture in sustainable agriculture. Philos Trans R Soc Lond B Biol Sci 363:543–555. https://doi.org/10.1098/rstb.2007.2169 Hongsibsong S, Sittitoon N, Sapbamrer R (2017) Association of health symptoms with low-level exposure to organophosphates, DNA damage, AChE activity, and occupational knowledge and practice among rice, corn, and double-crop farmers. J Occup Health 59:165–176. https://doi.org/10.1539/joh.16-0107-OA Hoornweg D, Thomas L, Otten L (2000) Composting and its applicability in developing countries. Published for the Urban Development Division The World Bank, Washington DC. Working Paper Series. 8. Urban Waste Management (2000) Hossard L, Philibert A, Bertrand M et al (2014) Effects of halving pesticide use on wheat production. Sci Rep 4:4405. https://doi.org/10.1038/srep04405 Huang HL, Zeng GM, Jiang RQ, Yuan XZ, Yu M (2009) Fluorescence spectroscopy characteristics of humic acid by inoculating white-rot fungus during different phases of agricultural waste composting. J Cent South Univ Technol 16:440–443. https://doi.org/10.1007/s11771-009-0074-7 Huang DL, Zeng GM, Feng CL et al (2010) Changes of microbial population structure related to lignin degradation during lignocellulosic waste composting. Bioresour Technol 101:4062–4067. https://doi.org/10.1016/j.biortech.2009.12.145 Huber A, Praznik W (2004) Identification and quantification of renewable crop materials. In: Stevens CV, Verhe R (eds) Renewable bioresources: Scope and modifications for non-food applications. Wiley, England Ichida JM, Krizova L, LeFevre CA, Keener HM, Elwell DL, Burtt EH (2001) Bacterial inoculum enhances keratin degradation and biofilm formation in poultry compost. J Microbiol Methods 47:199–208 Ilyin VK, Smirnov IA, Soldatov PE, Korniushenkova IN, Grinin AS, Lykov IN, Safronova SA (2004) Microbial utilisation of natural organic wastes. Acta Astronaut 54:357–361 Jaishankar M, Tseten T, Anbalagan N, Mathew BB, Beeregowda KN (2014) Toxicity, mechanism and health effects of some heavy metals. Interdiscip Toxicol 7:60–72. https://doi.org/10.2478/intox-2014-0009 Jorgensen H, Errikson T, Børjesson J, Tjerneld F, Olsson L (2003) Purification and characterization of five cellulases and one xylanases from Penicillium brasilianum IBT 20888. Enzyme Microb Technol 32:851–861 Jurak E, Kabel MA, Gruppen H (2014) Carbohydrate composition of compost during composting and mycelium growth of Agaricus bisporus. Carbohydr Polym 101:281–288. https://doi.org/10.1016/j.carbpol.2013.09.050 Jurak E, Punt AM, Arts W, Kabel MA, Gruppen H (2015) Fate of carbohydrates and Lignin during composting and mycelium growth of Agaricus bisporus on wheat straw based compost. PLoS One 10:e0138909. https://doi.org/10.1371/journal.pone.0138909 Kamran S, Shahid I, Baig DN, Rizwan M, Malik KA, Mehnaz S (2017) Contribution of zinc solubilizing bacteria in growth promotion and zinc content of wheat. Front Microbiol 8:2593. https://doi.org/10.3389/fmicb.2017.02593 Karimi AM, Yaghmaei S (2016) Biochemical production of bioenergy from agricultural crops and residue in Iran. Waste Manag 52:375–394. https://doi.org/10.1016/j.wasman.2016.03.025 Karubanga G, Kibwika P, Okry F, Sseguya H (2017) How farmer videos trigger social learning to enhance innovation among smallholder rice farmers in Uganda. Cogent Food Agric 3:1368105. https://doi.org/10.1080/23311932.2017.1368105 Kersten P, Cullen D (2007) Extracellular oxidative systems of the lignin-degrading Basidiomycete Phanerochaete chrysosporium. For Genet Biol 44:77–87. https://doi.org/10.1016/j.fgb.2006.07.007 Kesavan PC, Swaminathan MS (2008) Strategies and models for agricultural sustainability in developing Asian countries. Philos Trans R Soc Lond B Biol Sci 363:877–891. https://doi.org/10.1098/rstb.2007.2189 Khatri N, Tyagi S (2015) Influences of natural and anthropogenic factors on surface and groundwater quality in rural and urban areas. Front Life Sci 8:23–39. https://doi.org/10.1080/21553769.2014.933716 Kibblewhite MG, Ritz K, Swift MJ (2008) Soil health in agricultural systems. Philos Trans R Soc Lond B Biol Sci 363:685–701. https://doi.org/10.1098/rstb.2007.2178 Kumar BL, Sai Gopal DVR (2015) Effective role of indigenous microorganisms for sustainable environment. 3 Biotech 5:867–876. https://doi.org/10.1007/s13205-015-0293-6 Kumar AK, Sharma S (2017) Recent updates on different methods of pretreatment of lignocellulosic feedstocks: a review. Bioresour Bioprocess 4:7. https://doi.org/10.1186/s40643-017-0137-9 Kumar S, Chand G, Srivastava JN, Md Shamshe A (2014) Postharvest technology of button mushroom: a socio-economic feasibility. J Postharvest Technol 2:136–145 Kung CC, Kong F, Choi Y (2015) Pyrolysis and biochar potential using crop residues and agricultural wastes in China. Ecol Ind 51:139–145. https://doi.org/10.1016/j.ecolind.2014.06.043 Lal R (2015) Restoring soil quality to mitigate soil degradation. Sustainability 7:5875–5895. https://doi.org/10.3390/su7055875 Liers C, Ullrich R, Steffen KT, Hatakka A, Hofrichter M (2006) Mineralization of 14C-labelled synthetic lignin and extracellular enzyme activities of the wood-colonizing ascomycetes Xylaria hypoxylon and Xylaria polymorpha. Appl Microbiol Biotechnol 69:573–579. https://doi.org/10.1007/s00253-005-0010-1 Lim SL, Wu TY, Lim PN, Shak KPY (2015) The use of vermicompost in organic farming: overview, effects on soil and economics. J Sci Food Agric 95:1143–1156. https://doi.org/10.1002/jsfa.6849 Loow Y-L, Wu TY, Tan KA, Lim YS, Siow LF, Md Jahim J, Mohammad AW, Teoh WH (2015) Recent advances in the application of inorganic salt pretreatment for transforming lignocellulosic biomass into reducing sugars. J Agric Food Chem 63:8349–8363. https://doi.org/10.1021/acs.jafc.5b01813 Loow Y-L, New EK, Yang GH, Ang LY, Foo LYW, Wu TY (2017a) Potential use of deep eutectic solvents to facilitate lignocellulosic biomass utilization and conversion. Cellulose 24:3591–3618. https://doi.org/10.1007/s10570-017-1358-y Loow Y-L, Wu TY, Lim YS, Tan KA, Siow LF, Md Jahim J, Mohammad AW (2017b) Improvement of xylose recovery from the stalks of oil palm fronds using inorganic salt and oxidative agent. Energy Convers Manag 138:248–260. https://doi.org/10.1016/j.enconman.2016.12.015 Lorenz M, Fürst C, Thiel E (2013) A methodological approach for deriving regional crop rotations as basis for the assessment of the impact of agricultural strategies using soil erosion as example. J Environ Manag. https://doi.org/10.1016/j.jenvman.2013.04.050 Lori M, Symnaczik S, Mäder P, De Deyn G, Gattinger A (2017) Organic farming enhances soil microbial abundance and activity—a meta-analysis and meta-regression. PLoS One 12:e0180442. https://doi.org/10.1371/journal.pone.0180442 Louis BP, Maron P-A, Menasseri-Aubry S, Sarr A, Lévêque J, Mathieu O et al (2016) Microbial diversity indexes can explain soil carbon dynamics as a function of carbon source. PLoS One 11:e0161251. https://doi.org/10.1371/journal.pone.0161251 Ma A, Zhuang X, Wu J, Cui M, Lv D, Liu C, Zhuang G (2013) Ascomycota members dominate fungal communities during straw residue decomposition in arable soil. PLoS One 8:e66146. https://doi.org/10.1371/journal.pone.0066146 Malusá E, Sas-Paszt L, Ciesielska J (2012) Technologies for beneficial microorganisms inocula used as biofertilizers. Sci World J. https://doi.org/10.1100/2012/491206(article ID 491206) Marcela CP, Eduardo J, Azevedo C et al (2017) Advances in eco-efficient agriculture: the plant-soil mycobiome. Agriculture 7:14. https://doi.org/10.3390/agriculture7020014 Marshall E, Nair N (2009) Make money by growing mushrooms. Food and Agriculture Organization of the United Nations (FAO), Rome Martens W, Böhm R (2009) Overview of the ability of different treatment methods for liquid and solid manure to inactivate pathogens. Bioresour Technology. 100:5374–5378. https://doi.org/10.1016/j.biortech.2009.01.014 Martinez AT (2002) Molecular biology and structure–function of lignin-degrading heme peroxidases. Enzyme Microb Technol 30:425–432. https://doi.org/10.1016/S0141-0229(01)00521-X Martín-Gil J, Navas-Gracia LM, Gómez-Sobrino E, Correa-Guimaraes A, Hernández-Navarro S, Sánchez-Báscones M, del Carmen Ramos-Sánchez M (2008) Composting and vermicomposting experiences in the treatment and bioconversion of asphaltens from the prestige oil spill. Bioresour Technol 99:1821–1829. https://doi.org/10.1016/j.biortech.2007.03.031 Masran R, Zanirun Z, Bahrin EK, Ibrahim MF, Lai Yee P, Abd-Aziz S (2016) Harnessing the potential of ligninolytic enzymes for lignocellulosic biomass pretreatment. Appl Microbiol Biotechnol 100:5231–5246. https://doi.org/10.1007/s00253-016-7545-1 Meena VS, Maurya BR, Verma JP (2014) Does a rhizospheric microorganism enhance K+ availability in agricultural soils? Microbiol Res 169:337–347. https://doi.org/10.1016/j.micres.2013.09.003 Meena KK, Sorty AM, Bitla UM, Choudhary K, Gupta P, Pareek A, Singh DP, Prabha R, Sahu PK, Gupta VK, Singh HB, Krishanani KK, Minhas PS (2017) Abiotic stress responses and microbe-mediated mitigation in plants: the omics strategies. Front Plant Sci. https://doi.org/10.3389/fpls.2017.00172 Mielenz JR (2001) Ethanol production from biomass: technology and commercialization status. Curr Opin Microbiol 4:324–329. https://doi.org/10.1016/S1369-5274(00)00211-3 Miki T, Ushio M, Fukui S, Kondoh M (2010) Functional diversity of microbial decomposers facilitates plant coexistence in a plant–microbe–soil feedback model. Proc Nat Acad Sci USA 32:14251–14256. https://doi.org/10.1073/pnas.0914281107 Mishra V, Jana AK (2017) Fungal pretreatment of sweet sorghum bagasse with combined CuSO4-gallic acid supplement for improvement in lignin degradation, selectivity, and enzymatic saccharification. Appl Biochem Biotechnol 183:200–217. https://doi.org/10.1007/s13205-017-0719-4 Mohanty MK, Behera BK, Jena SK, Srikanth S, Mogane C, Samal S, Behera AA (2013) Knowledge attitude and practice of pesticide use among agricultural workers in Puducherry, South India. J Forensic Leg Med 20:1028–1031. https://doi.org/10.1016/j.jflm.2013.09.030 Mohler CL, Johnson SE (2009) Crop rotation on organic farms: a planning manual. Plant and Life Science Publishing (PALS), New York Moreno AD, Ibarra D, Alvira P, Tomás-Pejó E, Ballesteros M (2015) A review of biological delignification and detoxification methods for lignocellulosic bioethanol production. Crit Rev Biotechnol 35:342–354. https://doi.org/10.3109/07388551.2013.878896 Mosier N, Wyman CE, Dale BE, Elander R, Lee YY, Holtzapple M, Ladisch M (2005) Features of promising technologies for pretreatment of lignocellulosic biomass. Bioresour Technol 96:673–686. https://doi.org/10.1016/j.biortech.2004.06.025 Mouthier TMB, Kilic B, Vervoort P, Gruppen H, Kabel MA (2017) Potential of a gypsum-free composting process of wheat straw for mushroom production. PLoS One 12:e0185901. https://doi.org/10.1371/journal.pone.0185901 Msangi S (2012) Biofuels and a green economy. IFPRI, Washington, DC (source Internet). http://www.ifpri.org/blog/biofuels-and-green-economy. Accessed 18 Dec 2018 Mshandete AM, Cuff J (2008) Cultivation of three types of indigenous wild edible mushrooms: Coprinus cinereus, Pleurotus flabellatus and Volvariella volvacea on composted sisal decortications residue in Tanzania. Afr J Biotechnol 7:4551–4562 Muller A (2009) Benefits of organic agriculture as a climate change and mitigation strategy for developing countries. Environment for development, discussion paper series (2009). http://www.ifr.ac.uk/waste/reports/benefitsoforganicagriculture.pdf. Accessed 18 Dec 2018 Muthu D, Venkata Subramanian C, Ramakrishnan K, Sasidhar J (2017) Production of biogas from wastes blended with cow dung for electricity generation- a case study. IOP Conf Ser Earth Environ Sci 80:01205. https://doi.org/10.1088/1755-1315/80/1/012055 Muttalib SAA, Ismail SNS, Praveena SM (2016) Application of effective microorganism (EM) in food waste composting: a review. Asia Pac Environ Occup Health J 2:37–47 Nagavallemma KP, Wani SP, Stephane L, Padmaja VV, Vineela C, Babu Rao M, Sahrawat KL (2004) Vermicomposting: recycling wastes into valuable organic fertilizer. Global theme on agrecosystems report no. 8. An open access journal published by ICRISAT, p 20 Nair J, Okamitsu K (2012) Microbial inoculants for small scale composting of putrescible kitchen wastes. Waste Manag 30:977–982. https://doi.org/10.1016/j.wasman.2010.02.016 Naresh RK (2013) Rice residues: from waste to wealth through environment friendly and innovative management solutions, it’s effects on soil properties and crop productivity. Int J Life Sci Biotechnol Pharma Res 2:133–141 Ng LC, Sariah M, Radziah O, Zainal Abidin MA, Sariam O (2016) Development of microbial-fortified rice straw compost to improve plant growth, productivity, soil health, and rice blast disease management of aerobic rice. Compost Sci Util 24:86097 Nieves RA, Ehrman CI, Adney WS, Elander RT, Himmel ME (1998) Technical communication: survey and analysis of commercial cellulase preparations suitable for biomass conversion to ethanol. World J Microbiol Biotechnol 14:301–304. https://doi.org/10.1023/A:1008871205580 Novinscak A, Surette C, Allain C, Filion M (2008) Application of molecular technologies to monitor the microbial content of biosolids and composted biosolids. Water Sci Technol 57:471–477. https://doi.org/10.2166/wst.2008.019 Osteen C, Jessica G, Utpal V (2012) Agricultural resources and environmental indicators. EIB-98, U.S. Department of Agriculture, Economic Research Service Pal S, Sarkar S, Banerjee R, Chanda S, Das P et al (2010) Effectiveness of inoculation with isolated Geobacillus strains in the thermophilic stage of vegetable waste composting. Bioresour Technol 101:2892–2895. https://doi.org/10.1016/j.biortech.2009.11.095 Pallavi Chandra D, Sharma AK (2017) Commercial microbial products: exploiting beneficial plant-microbe interaction. In: Singh DP, Singh HB, Prabha R (eds) Plant–microbe interactions in agro-ecological perspectives. Springer, Singapore. https://doi.org/10.1007/978-981-10-6593-4_25 Pampuro N, Dinuccio E, Balsari P, Cavallo E (2016) Evaluation of two composting strategies for making pig slurry solid fraction suitable for pelletizing. Atmos Pollut Res 7:288–293. https://doi.org/10.1016/j.apr.2015.10.001 Pampuro N, Bagagiolo G, Priarone PC, Cavallo E (2017a) Effects of pelletizing pressure and the addition of woody bulking agents on the physical and mechanical properties of pellets made from composted pig solid fraction. Powder Technol 311:112–119. https://doi.org/10.1016/j.powtec.2017.01.092 Pampuro N, Bertora C, Sacco D, Dinuccio E, Grignani C, Balsari P, Cavallo E, Bernal MP (2017b) Fertilizer value and GHG emissions of pellets from the solid fraction of pig slurry compost. J Agric Sci 155:1646–1658. https://doi.org/10.1017/S002185961700079X Pampuro N, Caffaro F, Cavallo E (2018) Reuse of animal manure: a case study on stakeholders’ perceptions about pelletized compost in Northwestern Italy. Sustainability 10:2028. https://doi.org/10.3390/su10062028 Pan I, Dam B, Sen SK (2012) Composting of common organic wastes using microbial inoculants. 3 Biotech 2:127–134. https://doi.org/10.1007/s13205-011-0033-5 Parnell JJ, Berka R, Young HA, Sturino JM, Kang Y, Barnhart DM, DiLeo MV (2016) From the lab to the farm: an industrial perspective of plant beneficial microorganisms. Front Plant Sci 7:1110. https://doi.org/10.3389/fpls.2016.01110 Patchaye M, Sundarkrishnan B, Tamilselvan S, Sakthivel N (2018) Microbial management of organic waste in agroecosystem. In: Panpatte DG et al (eds) Microorganisms for green revolution. Book series microorganisms for sustainability, vol 7, pp 45–73. https://doi.org/10.1007/978-981-10-7146-1_3 Pathma J, Sakthivel N (2012) Microbial diversity of vermicompost bacteria that exhibit useful agricultural traits and waste management potential. Springerplus 1:26. https://doi.org/10.1186/2193-1801-1-26 Patra NK, Babu SC (2017) Mapping Indian agricultural emissions. Lessons for food system transformations and policy support for climate-smart agriculture. IFPRI discussion paper 01660 Perez J, Munoz-Dorado J, de la Rubia T, Martinez J (2014) Biodegradation and biological treatments of cellulose, hemicellulose and lignin: an overview. Int Microbiol 5:53–63. https://doi.org/10.1007/s10123-002-0062-3 Petre M, Petre V, Rusea I (2014) Microbial composting of fruit tree wastes through controlled submerged fermentation. Ital J Agron 9:152–156. https://doi.org/10.4081/ija.2014.610 Phalan B, Green R, Balmford A (2014) Closing yield gaps: perils and possibilities for biodiversity conservation. Philos Trans R Soc Lond B Biol Sci 369:20120285. https://doi.org/10.1098/rstb.2012.0285 Phan CW, Sabaratnam V (2012) Potential uses of spent mushroom substrate and its associated lignocellulosic enzymes. Appl Microbiol Biotechnol 96:863–873. https://doi.org/10.1007/s00253-012-4446-9 Pingali PL (2014) Green revolution: impacts, limits, and the path ahead. Proc Natl Acad Sci USA 109:12302–12308. https://doi.org/10.1073/pnas.0912953109 Pleissner D, Kwan TH, Lin CSK (2013) Fungal hydrolysis in submerged fermentation for food waste treatment and fermentation feedstock preparation. Bioresour Technol 158:48–54. https://doi.org/10.1016/j.biortech.2014.01.139 Popp J, Pető K, Nagy J (2013) Pesticide productivity and food security. A review. J Agron Sustain Dev 33:243. https://doi.org/10.1007/s13593-012-0105-x Pothiraj C, Kanmani P, Balaji P (2006) Bioconversion of lignocellulose materials. Mycobiology 34:159–165. https://doi.org/10.4489/MYCO.2006.34.4.159 Power AG (2010) Ecosystem services and agriculture: tradeoffs and synergies. Philos Trans R Soc Lond B Biol Sci 365:2959–2971. https://doi.org/10.1098/rstb.2010.0143 Pradhan P, Fischer G, van Velthuizen H, Reusser DE, Kropp JP (2015) Closing yield gaps: how sustainable can we be? PLoS One 10:e0129487. https://doi.org/10.1371/journal.pone.0129487 Pramanik P, Maity A, Mina U (2013) Multi-enterprise agriculture system. Int J Environ Sci Dev Monitor 4:86–88 Prassad S, Singh A, Joshi HC (2007) Ethanol as an alternative fuel from agricultural, industrial and urban residues. Resour Conserv Recycl 50:1–39. https://doi.org/10.1016/j.resconrec.2006.05.007 Pretty J, Bharucha ZP (2014) Sustainable intensification in agricultural systems. Ann Bot 114:1571–1596. https://doi.org/10.1093/aob/mcu205 Pugliese M, Liu B, Gullino ML, Garibaldi A (2011) Microbial enrichment of compost with biological control agents to enhance suppressiveness to four soil-borne diseases in greenhouse. J Plant Dis Prot 118:45–50. https://doi.org/10.1007/BF03356380 Raj A, Chandra R, Reddy MMK, Hemant JP, Kapley A (2007) Biodegradation of kraft lignin by a newly isolated bacterial strain, Aneurinibacillus aneurinilyticus from the sludge of a pulp paper mill. World J Microbiol Biotechnol 23:793–799. https://doi.org/10.1007/s11274-006-9299-x Rashid MI, Mujawar LH, Shahzad T, Almeelbi T, Ismail IMI, Oves M (2016) Bacteria and fungi can contribute to nutrients bioavailability and aggregate formation in degraded soils. Microbiol Res 183:26–41. https://doi.org/10.1016/j.micres.2015.11.007 Reddy CA, Saravanan RS (2013) Polymicrobial multi-functional approach for enhancement of crop productivity. Adv Appl Microbiol 82:53–113. https://doi.org/10.1016/B978-0-12-407679-2.00003-X Ribeiro NDQ, Souza TP, Costa LMAS, Castro CPD, Dias ES (2017) Microbial additives in the composting process. Ciência e Agrotecnologia 41:159–168. https://doi.org/10.1590/1413-70542017412038216 Romano E, Brambilla M, Bisaglia C, Pampuro N, Foppa Pedretti E, Cavallo E (2014) Pelletization of composted swine manure solid fraction with different organic co-formulates: effect of pellet physical properties on rotating spreader distribution patterns. Int J Recycl Org Waste Agric 3:101–111. https://doi.org/10.1007/s40093-014-0070-2 Romero E, Esperanza M, García-Guinea J, Martínez ÁT, Martínez MJ (2007) An anamorph of the white-rot fungus Bjerkandera adusta capable of colonizing and degrading compact disc components. FEMS Microbiol Lett 275:122–129. https://doi.org/10.1111/j.1574-6968.2007.00876.x Ros M, Raut I, Santisima-Trinidad AB, Pascual JA (2017) Relationship of microbial communities and suppressiveness of Trichoderma fortified composts for pepper seedlings infected by Phytophthora nicotianae. PLoS One 12:e0174069. https://doi.org/10.1371/journal.pone.0174069 Rubio R, Perez-Murcia MD, Agullo E, Bustamante MA, Sanchez C, Paredes C, Moral R (2013) Recycling of agro-food wastes into vineyards by composting: agronomic validation in field conditions. Commun Soil Sci Plant Anal 44:502–516. https://doi.org/10.1080/00103624.2013.744152 Sahu PK, Singh DP, Prabha R, Meena KK, Abhilash PC (2018) Connecting microbial capabilities with the soil and plant health: options for agricultural sustainability. Ecol Indic. https://doi.org/10.1016/j.ecolind.2018.05.084 Sánchez C (2009) Lignocellulosic residues: biodegradation and bioconversion by fungi. Biotechnol Adv 27:185–194. https://doi.org/10.1016/j.biotechadv.2008.11.001 Sanz-Cobena A, Lassaletta L, Aguilera E, Prado AD, Garnier J, Billen G, Iglesias A, Sánchez B, Guardia G, Abalos RD, Plaza-Bonilla D, Puigdueta-bartolomé I, Moral R, Galán E, Arriaga H, Merino P, Infante-Amate J, Meijide A, Pardo G, Álvaro-Fuentes J, Gilsanz C, Báez D, Doltra J, González-Ubierna S, Cayuela ML, Menéndez S, Díaz-Pinés E, Le-Noë J, Quemada M, Estellés F, Calvet S, Grinsven HJM, Van Westhoek H, Sanz MJ, Gimeno BS, Vallejo A, Smith P (2017) Strategies for greenhouse gas emissions mitigation in Mediterranean agriculture: a review. Agric Ecosyst Environ 238:5–24. https://doi.org/10.1016/j.agee.2016.09.038 Sarkar P, Chourasia R (2017) Bioconversion of organic solid wastes into biofortified compost using a microbial consortium. Int J Recycl Org Waste Agric 6:321–334. https://doi.org/10.1007/s40093-017-0180-8 Schloss PD, Hay AG, Wilson DB, Walker LP (2003) Tracking temporal changes of bacterial community fingerprints during the initial stages of composting. FEMS Microbiol Ecol 46:1–9. https://doi.org/10.1016/S0168-6496(03)00153-3 Schröder P, Beckers B, Daniels S, Gnädinger F, Maestri E, Marmiroli N, Mench M, Millan R, Obermeier MM, Oustriere N, Persson T, Poschenrieder C, Rineau F, Rutkowska B, Schmid T, Szulc W, Witters N, Sæbø A (2018) Intensify production, transform biomass to energy and novel goods and protect soils in Europe—a vision how to mobilize marginal lands. Sci Total Environ 616–617:1101–1123. https://doi.org/10.1016/j.scitotenv.2017.10.209 Seremesic S, Milosev D, Djalovic I, Zeremski T, Ninkov J (2011) Management of soil organic carbon in maintaining soil productivity and yield stability of winter wheat. Plant Soil Environ 57:216–221 Settle W, Soumaré M, Sarr M, Garba MH, Poisot AS (2012) Reducing pesticide risks to farming communities: cotton farmer field schools in Mali. Philos Trans R Soc Lond B Biol Sci 369:20120277. https://doi.org/10.1098/rstb.2012.0277 Seyedbagheri MM (2010) Compost: production, quality, and use in commercial agriculture. CIS 1175. University of Idaho. USA. http://cals.uidaho.edu/edcomm/pdf/CIS/CIS1175.pdf. Accessed 18 Dec 2018 Sharma SB, Sayyed RZ, Trivedi MH, Gobi TA (2013) Phosphate solubilizing microbes: sustainable approach for managing phosphorus deficiency in agricultural soils. Springerplus 2:587. https://doi.org/10.1186/2193-1801-2-587 Shennan C (2008) Biotic interactions, ecological knowledge and agriculture. Philos Trans R Soc Lond B Biol Sci 363:717–739. https://doi.org/10.1098/rstb.2007.2180 Shilev S, Naydenov M, Vancheva V, Aladjadjiyan A (2007) Composting of food and agricultural wastes. In: Oreopoulu V (ed) Utilization of by-products and treatment of waste in the food industry. Springer, Boston, pp 283–301. https://doi.org/10.1007/978-0-387-35766-9_15 Shrestha S, Fonoll X, Khanal SK, Raskin L (2017) Biological strategies for enhanced hydrolysis of lignocellulosic biomass during anaerobic digestion: current status and future perspectives. Bioresour Technol 245(Pt-A):1245–1257. https://doi.org/10.1016/j.biortech.2017.08.089 Siddiqui Y, Meon S, Ismail MR, Ali A (2008) Trichoderma-fortified compost extracts for the control of choanephora wet rot in okra production. Crop Prot 27:385–390. https://doi.org/10.1016/j.cropro.2007.07.002 Singh MP (2000) Biodegradation of lignocellulosic wastes through cultivation of Pleurotus sajor-caju. In: van Griensven LJLD (ed) Science and cultivation of edible fungi. CABI, Rotterdam, pp 517–521 Singh S, Nain L (2015) Microorganisms in the conversion of agricultural wastes to compost. Proc Ind Natl Sci Acad 80:473–481. https://doi.org/10.16943/ptinsa/2014/v80i2/7 Singh DP, Prabha R (2017) Bioconversion of agricultural wastes into high value biocompost: a route to livelihood generation for farmers. Adv Recycl Waste Manag 2:3. https://doi.org/10.4172/2475-7675.1000137 Singh A, Sharma S (2002) Composting of a crop residue through treatment with microorganisms and subsequent vermicomposting. Bioresour Technol 85:107–111 Singh R, Bishnoi DK, Singh A (2010) Cost benefit analysis and marketing of mushroom in Haryana. Agric Econ Res Rev 23:165–171 Sinha RK, Valani D, Sinha S, Singh S, Herat S (2009) Bioremediation of contaminated sites: a low-cost nature’s biotechnology for environmental clean up by versatile microbes, plants & earthworms. In: Faerber T, Herzog J (eds) Solid waste management and environmental remediation. Nova Science Publishers Inc, New York (ISBN 978-1-60741-761-3) Sonesson U, Bjorklund A, Carlsson M, Dalemo M (2000) Environmental and economic analysis of management systems for biodegradable waste. Resour Conserv Recycl 28:29–53 Sorek N, Yeats TH, Szemenyei H, Youngs H, Somerville CR (2014) The implications of lignocellulosic biomass chemical composition for the production of advanced biofuels. Bioscience (Oxford) 64:192–201. https://doi.org/10.1093/biosci/bit037 Sudharmaidevi CR, Thampatt KCM, Saifudeen N (2017) Rapid production of organic fertilizer from degradable waste by thermochemical processing. Int J Recycl Org Waste Agric 6:1–11. https://doi.org/10.1007/s40093-016-0147-1 Tláskal V, Voříšková J, Baldrian P (2016) Bacterial succession on decomposing leaf litter exhibits a specific occurrence pattern of cellulolytic taxa and potential decomposers of fungal mycelia. FEMS Microbiol Ecol 92:fiw177. https://doi.org/10.1093/femsec/fiw177 Trivedi P, Delgado-Baquerizo M, Anderson IC, Singh BK (2016) Response of soil properties and microbial communities to agriculture: implications for primary productivity and soil health indicators. Front Plant Sci 7:990. https://doi.org/10.3389/fpls.2016.00990 Urbanová M, Šnajdr J, Baldrian P (2015) Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees. Soil Biol Biochem 84:53–64. https://doi.org/10.1016/j.soilbio.2015.02.011 Valverde ME, Hernandez-Perez T, Paredes-Lopez O (2015) Edible mushrooms: improving human health and promoting quality life. Int J Microbiol 2015:376387. https://doi.org/10.1155/2015/376387 Varma VS, Das S, Sastri CV, Kalamdhad AS (2017) Microbial degradation of lignocellulosic fractions during drum composting of mixed organic waste. Sustain Environ Res 27:265–272. https://doi.org/10.1016/j.serj.2017.05.004 Venglovsky J, Sasakova N, Placha I (2009) Pathogens and antibiotic residues in animal manures and hygienic and ecological risks related to subsequent land application. Bioresour Technol 100:5386–5391. https://doi.org/10.1016/j.biortech.2009.03.068 Veselá M, Friedrich J (2009) Amino acid and soluble protein cocktail from waste keratin hydrolysed by a fungal keratinase of Paecilomyces marquandii. Biotechnol Bioprocess Eng 14:84–90. https://doi.org/10.1007/s12257-008-0083-7 Vigneswaran S, Kandasamy J, Johir MAH (2016) Sustainable operation of composting in solid waste management. Procedia Environ Sci 35:408415. https://doi.org/10.1016/j.proenv.2016.07.022 Villar I, Alves D, Garrido J, Mato S (2016) Evolution of microbial dynamics during the maturation phase of the composting of different types of waste. Waste Manag 54:83–92. https://doi.org/10.1016/j.wasman.2016.05.011 Vishan I, Sivaprakasam S, Kalamdhad A (2017) Isolation and identification of bacteria from rotary drum compost of water hyacinth. Int J Recycl Org Waste Agric 6:245–253. https://doi.org/10.1007/s40093-017-0172-8 Voříšková J, Baldrian P (2013) Fungal community on decomposing leaf litter undergoes rapid successional changes. SME J 7:477–486. https://doi.org/10.1038/ismej.2012.116 Weber C, Farwick A, Benisch F, Brat D, Dietz H, Subtil T et al (2010) Trends and challenges in the microbial production of lignocellulosic bioalcohol fuels. Appl Microbiol Biotechnol 87:1303–1315. https://doi.org/10.1007/s00253-010-2707-z Wei T, Zhang P, Wang K, Ding R, Yang B, Nie J, Jia Z, Han Q (2015) Effects of wheat straw incorporation on the availability of soil nutrients and enzyme activities in semiarid areas. PLoS One 10:e0120994. https://doi.org/10.1371/journal.pone.0120994 Weiland P, Verstraete W, van Haandel A (2009) Biomass digestion to methane in agriculture: a successful pathway for the energy production and waste treatment worldwide. In: Soetaert W, Vandamme EJ (eds) Biofuels. Wiley, New Jersey, pp 171–196. https://doi.org/10.1002/9780470754108.ch10 Yadav SK, Babu S, Yadav MK, Singh K, Yadav GS, Pal S (2013) A review of organic farming for sustainable agriculture in Northern India. Int J Agron. https://doi.org/10.1155/2013/718145 Yildirim N, Yildirim NC, Yildiz A (2015) Laccase enzyme activity during growth and fruiting of Pleurotus eryngii under solid state fermentation medium containing agricultural wastes. Int J Pure Appl Sci 1:64–71 Zeng Y, De Guardia A, Dabert P (2016) Improving composting as a post-treatment of anaerobic digestate. Bioresour Technol 201:293–303. https://doi.org/10.1016/j.biortech.2015.11.013 Zhang J, Zeng G, Chen Y et al (2013) Impact of Phanerochaete chrysosporium inoculation on indigenous bacterial communities during agricultural waste composting. Appl Microbiol Biotechnol 97:3159–3169. https://doi.org/10.1007/s00253-012-4124-y Zhang Y, Geng W, Shen Y, Wang Y, Dai Y-C (2014) Edible mushroom cultivation for food security and rural development in China: bio-innovation, technological dissemination and marketing. Sustainability 6:2961–2973. https://doi.org/10.3390/su6052961 Zhang X, Sun N, Wu L, Xu M, Bingham IJ, Li Z (2016) Effects of enhancing soil organic carbon sequestration in the topsoil by fertilization on crop productivity and stability: evidence from long-term experiments with wheat-maize cropping systems in China. Sci Total Environ 562:247–259. https://doi.org/10.1016/j.scitotenv.2016.03.193 Zhen Z, Liu H, Wang N, Guo L, Meng J, Ding N, Wu G, Jiang G (2014) Effects of manure compost application on soil microbial community diversity and soil microenvironments in a temperate cropland in China. PLoS One 9:e108555. https://doi.org/10.1371/journal.pone.0108555