Agricultural land consolidation impacted edaphic microbial community dynamics and assembly in China - a case study from Zhejiang Province

Acuña-Rodríguez, 2020, Functional roles of microbial symbionts in plant cold tolerance, Ecology Letters, 23, 1034, 10.1111/ele.13502 Angenent, 2005, Molecular identification of potential pathogens in water and air of a hospital therapy pool, Proceedings of the National Academy of Sciences of the United States of America, 102, 4860, 10.1073/pnas.0501235102 Asiama, 2017, Land consolidation on Ghana's rural customary lands: Drawing from The Dutch, Lithuanian and Rwandan experiences, Journal of Rural Studies, 56, 87, 10.1016/j.jrurstud.2017.09.007 Bhadouria, 2020, Chapter 22 - Mycoremediation of agrochemicals, 593 Bose, 1961, Studies on Massarina Sacc. and Related Genera, Journal of Phytopathology, 41, 151, 10.1111/j.1439-0434.1961.tb04048.x Bremner, J.M., 1996. Nitrogen-Total. in: Sparks, D. et al. (Eds.), Methods of Soil Analysis, pp. 1085-1121. Brookes, 1985, Chloroform fumigation and the release of soil nitrogen: A rapid direct extraction method to measure microbial biomass nitrogen in soil, Soil Biology and Biochemistry, 17, 837, 10.1016/0038-0717(85)90144-0 Cannon, 2007, Fungal families of the world, Cabi. Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nature Methods, 7, 335, 10.1038/nmeth.f.303 Chen, 2020, Root ethylene mediates rhizosphere microbial community reconstruction when chemically detecting cyanide produced by neighbouring plants, Microbiome, 8, 4, 10.1186/s40168-019-0775-6 Cheng, 2018, Effect of reclamation of abandoned salinized farmland on soil bacterial communities in arid northwest China, Science of The Total Environment, 630, 799, 10.1016/j.scitotenv.2018.02.259 Chen, 2021, Can payment tools substitute for regulatory ones? Estimating the policy preference for agricultural land preservation, Tianjin, China. Land Use Policy, 100, 10.1007/978-981-15-8331-5 Colwell, 1963, The estimation of the phosphorus fertilizer requirements of wheat in southern New South Wales by soil analysis, Australian Journal of Experimental Agriculture, 3, 190, 10.1071/EA9630190 Copeland, 2009, Complete genome sequence of Catenulispora acidiphila type strain (ID 139908T), Standards in Genomic Sciences, 1, 119, 10.4056/sigs.17259 de Vries, 2018, Soil bacterial networks are less stable under drought than fungal networks, Nature Communications, 9, 3033, 10.1038/s41467-018-05516-7 Detheridge, 2016, The legacy effect of cover crops on soil fungal populations in a cereal rotation, Agriculture, Ecosystems & Environment, 228, 49, 10.1016/j.agee.2016.04.022 Devadatha, 2019, Molecular data reveals a new holomorphic marine fungus, Halobyssothecium estuariae, and the asexual morph of Keissleriella phragmiticola, Mycology, 1 Dik, 1998, Comparison of three biological control agents against cucumber powdery mildew (Sphaerotheca fuliginea) in semi-commercial-scale glasshouse trials, European Journal of Plant Pathology, 104, 413, 10.1023/A:1008025416672 Duan, 2016, Biodegradation of kraft lignin by a newly isolated anaerobic bacterial strain, Acetoanaerobium sp. WJDL-Y2, Letters in Applied Microbiology, 62, 55, 10.1111/lam.12508 Edgar, 2013, UPARSE: highly accurate OTU sequences from microbial amplicon reads, Nature Methods, 10, 996, 10.1038/nmeth.2604 Fuhrman, 2009, Microbial community structure and its functional implications, Nature, 459, 193, 10.1038/nature08058 Fukuda, K., 2019. Radiocesium Contamination on a University Campus and in Forests in Kashiwa City, Chiba Prefecture, a Suburb of Metropolitan Tokyo. in: Nakanishi, T.M., O‘Brien, M., Tanoi, K. (Eds.), Agricultural Implications of the Fukushima Nuclear Accident (III): After 7 Years. Springer Singapore, Singapore, pp. 191-209. Gieg, 2014, Syntrophic biodegradation of hydrocarbon contaminants, Current Opinion in Biotechnology, 27, 21, 10.1016/j.copbio.2013.09.002 Grace Liu, 2011, Bioremediation of petroleum hydrocarbon contaminated soil: Effects of strategies and microbial community shift, International Biodeterioration & Biodegradation, 65, 1119, 10.1016/j.ibiod.2011.09.002 Gu, 2020, Arbuscular mycorrhizal fungal community was affected by tillage practices rather than residue management in black soil of northeast China, Soil and Tillage Research, 198, 10.1016/j.still.2019.104552 Guo, B., Fang, Y., Jin, X., zhou, Y., 2020a. Monitoring the effects of land consolidation on the ecological environmental quality based on remote sensing: A case study of Chaohu Lake Basin, China. Land Use Policy, 95, 104569. Guo, 2015, Determining the effects of land consolidation on the multifunctionlity of the cropland production system in China using a SPA-fuzzy assessment model, European Journal of Agronomy, 63, 12, 10.1016/j.eja.2014.11.002 Guo, 2020, Analysis of microbial utilization of rice straw in paddy soil using a DNA-SIP approach, Soil Science Society of America Journal, 84, 99, 10.1002/saj2.20019 Hoffmann, 1961, Ein kolorimetrisches Verfahren zur Bestimmung der Ureaseaktivität in Böden, Zeitschrift für Pflanzenernährung, Düngung, Bodenkunde, 95, 55, 10.1002/jpln.19610950107 Hu, 2013, Contrasting Euryarchaeota communities between upland and paddy soils exhibited similar pH-impacted biogeographic patterns, Soil Biology and Biochemistry, 64, 18, 10.1016/j.soilbio.2013.04.003 Huang, 2015, Illumina MiSeq investigations on the changes of microbial community in the Fusarium oxysporum f.sp. cubense infected soil during and after reductive soil disinfestation, Microbiological Research, 181, 33, 10.1016/j.micres.2015.08.004 Ishii, 2009, Microbial Populations Responsive to Denitrification-Inducing Conditions in Rice Paddy Soil, as Revealed by Comparative 16S rRNA Gene Analysis, Applied and Environmental Microbiology, 75, 7070, 10.1128/AEM.01481-09 Issac, 1971 Jacinthe, 2009, Tillage Effects on Carbon Sequestration and Microbial Biomass in Reclaimed Farmland Soils of Southwestern Indiana, Soil Science Society of America Journal, 73, 605, 10.2136/sssaj2008.0156 Ji, 2014, Novel Outer Membrane Protein Involved in Cellulose and Cellooligosaccharide Degradation byCytophaga hutchinsonii, Applied and Environmental Microbiology, 80, 4511, 10.1128/AEM.00687-14 Jiao, 2016, Bacterial communities in oil contaminated soils: Biogeography and co-occurrence patterns, Soil Biology and Biochemistry, 98, 64, 10.1016/j.soilbio.2016.04.005 Jiao, 2020, Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China, The ISME Journal, 14, 202, 10.1038/s41396-019-0522-9 Jin, 2017, The evaluation of land consolidation policy in improving agricultural productivity in China, Scientific Reports, 7, 2792, 10.1038/s41598-017-03026-y Karásek, 2018, Priority Areas for Initiating Land Consolidations Related to Erosion and Water Retention in the Landscape, Czech Republic, Journal of Ecological Engineering, 19, 16, 10.12911/22998993/89655 Kelly, 2000, Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov, International Journal of Systematic and Evolutionary Microbiology, 50, 511, 10.1099/00207713-50-2-511 Kirita, 1971, RE-EXAMINATION OF THE ABSORPTION METHOD OF MEASURING SOIL RESPIRATION UNDER FIELD CONDITIONS : IV. AN IMPROVED ABSORPTION METHOD USING A DISC OF PLASTIC SPONGE AS ABSORBENT HOLDER, JAPANESE JOURNAL OF ECOLOGY, 21, 119 Lee, 2012, Catenulispora graminis sp. nov., a rhizobacterium from bamboo (Phyllostachys nigro var. henonis) rhizosphere soil, International Journal of Systematic and Evolutionary Microbiology, 62, 2589, 10.1099/ijs.0.035501-0 Leff, 2015, Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe, Proceedings of the National Academy of Sciences, 112, 10967, 10.1073/pnas.1508382112 Li, 2016, Phthalate esters in soil, plastic film, and vegetable from greenhouse vegetable production bases in Beijing, China: Concentrations, sources, and risk assessment, Science of The Total Environment, 568, 1037, 10.1016/j.scitotenv.2016.06.077 Li, 2018, Response of soil microbial communities to red mud-based stabilizer remediation of cadmium-contaminated farmland, Environmental Science and Pollution Research, 25, 11661, 10.1007/s11356-018-1409-4 Li, 2019, Possibilities and requirements for introducing agri-environment measures in land consolidation projects in China, evidence from ecosystem services and farmers' attitudes, Science of The Total Environment, 650, 3145, 10.1016/j.scitotenv.2018.10.051 Li, 2019, Short-Term Response of Soil Microbial Community to Field Conversion from Dryland to Paddy under the Land Consolidation Process in North China, Agriculture, 9, 216, 10.3390/agriculture9100216 Li, 2018, Land consolidation for rural sustainability in China: Practical reflections and policy implications, Land Use Policy, 74, 137, 10.1016/j.landusepol.2017.07.003 Liang, 2019, Increasing Temperature and Microplastic Fibers Jointly Influence Soil Aggregation by Saprobic Fungi, Frontiers in Microbiology, 10, 10.3389/fmicb.2019.02018 Lin, 2019, Comprehensive assessment of paddy soil quality under land consolidation: a novel perspective of microbiology, PeerJ, 7, 10.7717/peerj.7351 Lin, 2020, Changes in microbial community structure under land consolidation in paddy soils: A case study in eastern China, Ecological Engineering, 145, 10.1016/j.ecoleng.2019.105696 Linhardt, 1965, Phosphatases (Phosphomonoesterases), 779 Louca, 2016, Decoupling function and taxonomy in the global ocean microbiome, Science, 353, 1272, 10.1126/science.aaf4507 Luo, 2017, An assessment of farmers’ satisfaction with land consolidation performance in China, Land Use Policy, 61, 501, 10.1016/j.landusepol.2016.12.002 Mandal, 2015, Analysis of composition of microbiomes: a novel method for studying microbial composition, Microb Ecol Health Dis, 26, 27663 Marin-Felix, 2019, Genera of phytopathogenic fungi: GOPHY 3, Studies in Mycology, 94, 1, 10.1016/j.simyco.2019.05.001 Möller, 2018, Soil fertility status and nutrient input–output flows of specialised organic cropping systems: a review, Nutrient Cycling in Agroecosystems, 112, 147, 10.1007/s10705-018-9946-2 Naga Raju, 2017, Soil Protease, 19 Nguyen, 2016, FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild, Fungal Ecology, 20, 241, 10.1016/j.funeco.2015.06.006 Nilsson, 2018, The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications, Nucleic Acids Research, 47, D259, 10.1093/nar/gky1022 Oksanen, J. et al., 2019. vegan: Community Ecology Package. Parks, D.H., Tyson, G.W., Hugenholtz, P., Beiko, R.G., 2014. STAMP: statistical analysis of taxonomic and functional profiles. Bioinformatics, 30, 3123-3124. Pašakarnis, G., Maliene, V., 2010. Towards sustainable rural development in Central and Eastern Europe: Applying land consolidation. Land Use Policy, 27, 545-549. R Core Team, 2019 Reazin, 2019, Chestnuts bred for blight resistance depart nursery with distinct fungal rhizobiomes, Mycorrhiza, 29, 313, 10.1007/s00572-019-00897-z Rivera-Mendez, 2019, Biological control of Setophoma terrestris isolated from onion rhizosphere in Costa Rica, Archives of Phytopathology and Plant Protection, 52, 813, 10.1080/03235408.2018.1548258 Rodrigues, 2016, Sporothrix chilensis sp. nov. (Ascomycota: Ophiostomatales), a soil-borne agent of human sporotrichosis with mild-pathogenic potential to mammals, Fungal Biology, 120, 246, 10.1016/j.funbio.2015.05.006 Schad, 2017 Schmidt, 2014, Do bacterial and fungal communities assemble differently during primary succession?, Mol Ecol, 23, 254, 10.1111/mec.12589 Simmons, 2012, Alogomyces tanneri gen. et sp. nov., a chytrid in Lobulomycetales from horse manure, Mycologia, 104, 157, 10.3852/11-043 Sorokin, 2013, Halophilic and haloalkaliphilic sulfur-oxidizing bacteria, 529 Starr, E.P., 2019. Disentangling the rhizosphere community through stable isotope informed genome-resolved metagenomics and assembled metatranscriptomes., UC Berkeley, ProQuest Dissertations Publishing. Stpniewska, 2009, Response of soil catalase activity to chromium contamination, Journal of Environmental Sciences, 21, 1142, 10.1016/S1001-0742(08)62394-3 Strom, 2020, Interactions between soil properties, fungal communities, the soybean cyst nematode, and crop yield under continuous corn and soybean monoculture, Applied Soil Ecology, 147, 10.1016/j.apsoil.2019.103388 Su, 2020, Identifying the driving forces of non-grain production expansion in rural China and its implications for policies on cultivated land protection, Land Use Policy, 92, 10.1016/j.landusepol.2019.104435 Tyub, 2018, Root-associated fungi of Pinus wallichiana in Kashmir Himalaya, Canadian Journal of Forest Research, 48, 923, 10.1139/cjfr-2018-0084 Velez, 2020, Cultivable fungi from deep-sea oil reserves in the Gulf of Mexico: Genetic signatures in response to hydrocarbons, Marine Environmental Research, 153, 10.1016/j.marenvres.2019.104816 Venables, 2002 Walsh, 2012, Fungal and bacterial growth following the application of slurry and anaerobic digestate of livestock manure to temperate pasture soils, Biology and Fertility of Soils, 48, 889, 10.1007/s00374-012-0681-6 Wang, 2015, The effects of land consolidation on the ecological connectivity based on ecosystem service value: A case study of Da’an land consolidation project in Jilin province, Journal of Geographical Sciences, 25, 603, 10.1007/s11442-015-1190-y Wang, 2007, Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy, Applied and Environmental Microbiology, 73, 5261, 10.1128/AEM.00062-07 Xu, 2017, Comparison of Microbial Community Composition and Diversity in Native Coastal Wetlands and Wetlands that Have Undergone Long-Term Agricultural Reclamation, Wetlands, 37, 99, 10.1007/s13157-016-0843-7 Yuan, 2018, Soil bacterial community mediates the effect of plant material on methanogenic decomposition of soil organic matter, Soil Biology and Biochemistry, 116, 99, 10.1016/j.soilbio.2017.10.004 Zhang, J., 2016. spaa: SPecies Association Analysis. Zhang, 2020, Assessment of Biodegradation in Natural Attenuation Process of Chlorinated Hydrocarbons Contaminated Site: An Anaerobic Microcosm Study, Soil and Sediment Contamination: An International Journal, 29, 165, 10.1080/15320383.2019.1689920 Zhang, 2011, A molecular, morphological and ecological re-appraisal of Venturiales-a new order of Dothideomycetes, Fungal Diversity, 51, 249, 10.1007/s13225-011-0141-x Zhong, 2020, Effects of agricultural land consolidation on ecosystem services: Trade-offs and synergies, Journal of Cleaner Production, 264, 10.1016/j.jclepro.2020.121412 Zhong, 2020, Effects of agricultural land consolidation on soil conservation service in the Hilly Region of Southeast China – Implications for land management, Land Use Policy, 95, 10.1016/j.landusepol.2020.104637