Age-related increase in methylation of ribosomal genes and inactivation of chromosome-specific rRNA gene clusters in mouse

Mutation Research/DNAging - Tập 237 - Trang 131-146 - 1990
Karen Swisshelm1, Christine M. Disteche1, Joanne Thorvaldsen1, Andrew Nelson1, Darrell Salk1
1Department of Pathology, SM-30, University of Washington, Seattle, WA 98195 U.S.A.

Tài liệu tham khảo

Anisimov, 1983, Carcinogenesis and and aging, Adv. Cancer Res., 40, 365, 10.1016/S0065-230X(08)60684-3 Arnheim, 1979, Characterization of mouse ribosomal gene fragments purified by molecular cloning, Gene, 7, 83, 10.1016/0378-1119(79)90025-8 Arnheim, 1982, Distribution of ribosomal gene length variants among mouse chromosomes, 79, 4677 Bird, 1986, CpG-rich islands and the function of DNA methylation, Nature (London), 321, 209, 10.1038/321209a0 Bird, 1981, Methylated and unmethylated ribosomal RNA genes in the mouse, J. Mol. Biol., 152, 1, 10.1016/0022-2836(81)90092-9 Bourbon, 1988, Sequence and secondary structure of the 5′ external transcribed spacer of mouse pre-rRNA, DNA, 7, 181, 10.1089/dna.1988.7.181 Cassidy, 1986, Transcriptional role for the nontranscribed spacer of rat ribosomal DNA, Mol. Cell. Biol., 6, 2766, 10.1128/MCB.6.8.2766 Clos, 1986, The core promoter of mouse rDNA consists of two functionally distinct domains, Nucleic Acids Res., 14, 7581, 10.1093/nar/14.19.7581 Coulondre, 1978, Molecular basis of base substitution hotspots in Escherichia coli, Nature (London), 274, 775, 10.1038/274775a0 Disteche, 1989, Comparison of the physical and recombination maps of the mouse X chromosome, Genomics, 5, 177, 10.1016/0888-7543(89)90044-X Drinkwater, 1989, Human lymphocytes aged in vivo have reduced levels of methylation in transcriptionally active and inactive DNA, Mutation Res., 219, 29, 10.1016/0921-8734(89)90038-6 Dush, 1985, Nucleotide sequence and organization of the mouse adenine phosphoribosyltransferase gene: presence of a coding region common to animal and bacterial phosphoribosyltransferases that has a variable intron/exon arrangement, 82, 2731 Engel, 1977, Activation of mouse ribosomal RNA genes at the 2-cell stage, Hum. Genet., 38, 57, 10.1007/BF00295808 Feinberg, 1983, A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity, Anal. Biochem., 137, 266 Gardiner-Garden, 1987, CpG islands in vertebrate genomes, J. Mol. Biol., 196, 261, 10.1016/0022-2836(87)90689-9 Gerbi, 1985, Evolution of ribosomal DNA, 419 Goldman, 1983, Mouse rDNA: sequences and evolutionary analysis of spacer and mature RNA regions, Mol. Cell. Biol., 3, 1488, 10.1128/MCB.3.8.1488 Goodpasture, 1975, Visualization of nucleolar organizer regions in mammalian chromosomes using silver staining, Chromosoma, 53, 37, 10.1007/BF00329389 Graves, 1985, Differential expression of two clusters of mouse histone genes, J. Mol. Biol., 183, 179, 10.1016/0022-2836(85)90211-6 Grimaldi, 1988, Multiple repeated units in Drosophila melanogaster ribosomal DNA spacer stimulate rRNA precursor transcription, 85, 5502 Grummt, 1982, Nucleotide sequence requirements for specific initiation of transcription by RNA polymerase I, 79, 6908 Grummt, 1985, Efficient transcription of a protein-coding gene from the RNA polymerase I promoter in transfected cells, 82, 722 Harrington, 1987, Transcription of spacer sequences flanking the rat 45S ribosomal DNA gene, Mol. Cell. Biol., 7, 314, 10.1128/MCB.7.1.314 Hassouna, 1984, The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes, Nucleic Acids Res., 12, 3563, 10.1093/nar/12.8.3563 Hilgers, 1986, Ribosomal gene length variants and NOR regions in the C X S series, Mouse Newslett., 74, 77 Holliday, 1987, The inheritance of epigenetic defects, Science, 238, 163, 10.1126/science.3310230 Howell, 1977, Visualization of ribosomal gene activity: silver strains proteins associated with rRNA transcribed from oocyte chromosomes, Chromosoma, 62, 361, 10.1007/BF00327034 Howell, 1980, Controlled silver-staining of nucleolus organizer regions with a protective colloidal developer: a 1 step method, Experientia, 36, 1014, 10.1007/BF01953855 Jones, 1986, DNA methylation and cancer, Cancer Res., 46, 461 Kohorn, 1982, Nontranscribed spacer sequences promote in vitro transcription of Drosophila ribosomal DNA, Nucleic Acids Res., 10, 6879, 10.1093/nar/10.21.6879 Kozak, 1975, Gene linkage analysis in the mouse by somatic cell hybridization: assignment of adenine phosphoribosyltransferase to chromosome 8 and alpha-galactosidase to the X chromosome, Somat. Cell Genet., 1, 371, 10.1007/BF01538668 Kuehn, 1983, Nucleotide sequence of the genetically labile repeated elements 5′ to the origin of mouse rRNA transcription, Nucleic Acids Res., 11, 211, 10.1093/nar/11.1.211 Kuhn, 1987, A novel promoter in the mouse rDNA spacer is active in vivo and in vitro, EMBO J., 6, 3487, 10.1002/j.1460-2075.1987.tb02673.x Kunnath, 1982, Variable methylation of the ribosomal RNA genes of the rat, Nucleic Acids Res., 10, 3877, 10.1093/nar/10.13.3877 Lapeyre, 1987, Nucleolin, the major nucleolar protein of growing eukaryotic cells: an unusual protein structure revealed by the nucleotide sequence, 84, 1472 Lock, 1987, Methylation of the Hprt gene on the inactive X occurs after chromosome inactivation, Cell, 48, 39, 10.1016/0092-8674(87)90353-9 Lopata, 1986, RNA polymerase specificity of mRNA production and enhancer action, 83, 6677 MacLeod, 1983, Transcription in oocytes of highly methylated rDNA from Xenopus laevis sperm, Nature (London), 306, 200, 10.1038/306200a0 Mays-Hoopes, 1983, Methylation and rearrangement of mouse intracisternal A particle genes in development, aging, and myeloma, Mol. Cell. Biol., 3, 1371, 10.1128/MCB.3.8.1371 Mays-Hoopes, 1986, Decreased methylation of the major mouse long interspeed repeated DNA during aging and in myeloma cells, Dev. Genet., 7, 65, 10.1002/dvg.1020070202 McClintock, 1934, The relation of a particular chromosomal element to the development of the nucleoli in Zea mays, Z. Zellforsch., 21, 294, 10.1007/BF00374060 Mehta, 1984, Exact significance testing to establish treatment equivalence with ordered categorical data, Biometrics, 40, 819, 10.2307/2530927 Miller, 1985, A complex control region of the mouse rRNA gene directs accurate initiation by RNA polymerase I, Mol. Cell. Biol., 5, 554, 10.1128/MCB.5.3.554 Miller, 1978, Cytogenetics, 591 Moss, 1983, A transcriptional function for the repetitive ribosomal spacer in Xenopus laevis, Nature (London), 302, 223, 10.1038/302223a0 Ono, 1986, Methylation of the c-myc gene changes during aging process of mice, Biochem. Biophys. Res. Commun., 139, 1299, 10.1016/S0006-291X(86)80319-9 Ono, 1989, Age-associated changes in DNA methylation and mRNA level of the c-myc gene in spleen and liver of mice, Mutation Res., 219, 39, 10.1016/0921-8734(89)90039-8 Pennock, 1984, In vitro methylation of HpaII sites in Xenopus leavis rDNA does not affect its transcription in oocytes, Nucleic Acids Res., 12, 2225, 10.1093/nar/12.4.2225 Reeder, 1985, Mechanisms of nucleolar dominance in animals and plants, J. Cell Biol., 101, 2013, 10.1083/jcb.101.5.2013 Romanov, 1981, Methylation of reiterated sequences in mammalian DNAs. Effects of the tissue type, age, malignancy and hormonal induction, Biochim. Biophys. Acta, 653, 204, 10.1016/0005-2787(81)90156-8 Saluz, 1986, Genomic sequencing reveals a positive correlation between the kinetics of strand-specific DNA demethylation of the overlapping estradiol/glucocorticoid-receptor binding sites and the rate of avian vitellogenin mRNA synthesis, 83, 7167 Selker, 1990, DNA methylation and chromatin structure: a view from below, Trends Biochem., 15, 103, 10.1016/0968-0004(90)90193-F Selker, 1985, DNA methylation at asymmetric sites is associated with numerous transition mutations, 82, 8114 Singhal, 1987, DNA methylation in aging of mice, Mech. Ageing Dev., 41, 199, 10.1016/0047-6374(87)90040-6 Sittman, 1983, Structure of a cluster of mouse histone genes, Nucleic Acids Res., 11, 6679, 10.1093/nar/11.19.6679 Southern, 1975, Detection of specific sequences among DNA fragments separated by gel electrophoresis, J. Mol. Biol., 98, 503, 10.1016/S0022-2836(75)80083-0 Spector, 1984, Silver staining, immunoflourescence, and immunoelectron microscopic localization of nucleolar phosphoproteins B23 and C23, Chromosoma, 90, 139, 10.1007/BF00292451 Tantravahi, 1981, Evidence for methylation of inactive human rRNA genes in amplified regions, Hum. Genet., 56, 315, 10.1007/BF00274686 Tantravahi, 1981, Amplified ribosomal RNA genes in a rat hepatoma cell line are enriched in 5-methylcytosine, 78, 489 Taylor, 1982, Mechanism of action of eukaryotic DNA methyltransferase: use of 5-azacytosine-containing DNA, J. Mol. Biol., 162, 679, 10.1016/0022-2836(82)90395-3 Tower, 1989, An RNA polymerase I promoter located in the CHO and mouse ribosomal DNA spacers: functional analysis and factor and sequence requirements, Mol. Cell. Biol., 9, 1513, 10.1128/MCB.9.4.1513 Turker, 1989, A partial methylation profile for a CpG site is stably maintained in mammalian tissues and culture cell lines, J. Biol. Chem., 264, 11632, 10.1016/S0021-9258(18)80110-7 Vanyushin, 1973, The 5-methylcytosine in DNA of rats, Gerontologia, 19, 138, 10.1159/000211967 Wilson, 1987, Genome 5-methyldeoxycytidine decreases with age, J. Biol. Chem., 262, 9948, 10.1016/S0021-9258(18)61057-9 Wood, 1984, Transcription of the mouse ribosomal spacer region, Mol. Cell. Biol., 4, 822, 10.1128/MCB.4.5.822 Yamamoto, 1984, Determination of the promoter region of mouse ribosomal RNA gene by an in vitro transcription system, 81, 299 Youssoufian, 1986, Recurrent mutations in haemophilia A give evidence for CpG mutation hot spots, Nature (London), 324, 380, 10.1038/324380a0 Zurcher, 1982, Aging research, Vol. IV, 11