Against the grain: safeguarding rice from rice blast disease

Trends in Biotechnology - Tập 27 - Trang 141-150 - 2009
Pari Skamnioti1, Sarah J. Gurr1
1Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK

Tài liệu tham khảo

Sheehy, 2008, Harnessing photosynthesis in tomorrow's world: humans, crop production and poverty alleviation, 1243 Oerke, 2004, Safeguarding production – losses in major crops and the role of crop protection, Crop Prot., 23, 275, 10.1016/j.cropro.2003.10.001 Khush, 2005, What it will take to feed 5.0 billion rice consumers in 2030, Plant Mol. Biol., 59, 1, 10.1007/s11103-005-2159-5 Zhang, 2007, Strategies for developing green super rice, Proc. Natl. Acad. Sci. U. S. A., 104, 16402, 10.1073/pnas.0708013104 Kato, 2001, Rice blast disease, Pestic. Outlook, 12, 23, 10.1039/b100803j Couch, 2002, A multilocus gene genealogy concordant with host preference indicates segregation of a new species, Magnaporthe oryzae, from M. grisea, Mycologia, 94, 683, 10.1080/15572536.2003.11833196 Ou, 1987 Couch, 2005, Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice, Genetics, 170, 613, 10.1534/genetics.105.041780 Talbot, 2003, On the trail of a cereal killer: exploring the biology of Magnaporthe grisea, Annu. Rev. Microbiol., 57, 177, 10.1146/annurev.micro.57.030502.090957 Ebbole, 2007, Magnaporthe as a model for understanding host-pathogen interactions, Annu. Rev. Phytopathol., 45, 437, 10.1146/annurev.phyto.45.062806.094346 Dean, 2005, The genome sequence of the rice blast fungus Magnaporthe grisea, Nature, 434, 980, 10.1038/nature03449 Sweigard, 1995, Identification, cloning, and characterization of Pwl2, a gene for host species-specificity in the rice blast fungus, Plant Cell, 7, 1221 Kang, 1995, The PWL host specificity gene family in the blast fungus Magnaporthe grisea, Mol. Plant Microbe Interact., 8, 939, 10.1094/MPMI-8-0939 Murakami, 2000, Analysis of host species specificity of Magnaporthe grisea toward wheat using a genetic cross between isolates from wheat and foxtail millet, Phytopathology, 90, 1060, 10.1094/PHYTO.2000.90.10.1060 Tosa, 2006, Genetic analysis of host species specificity of Magnaporthe oryzae isolates from rice and wheat, Phytopathology, 96, 480, 10.1094/PHYTO-96-0480 Takabayashi, 2002, A gene-for-gene relationship underlying the species-specific parasitism of Avena/Triticum isolates of Magnaporthe grisea on wheat cultivars, Phytopathology, 92, 1182, 10.1094/PHYTO.2002.92.11.1182 Murakami, 2003, Analysis of host species specificity of Magnaporthe grisea toward foxtail millet using a genetic cross between isolates from wheat and foxtail millet, Phytopathology, 93, 42, 10.1094/PHYTO.2003.93.1.42 Chen, 2006, Genetic analysis and molecular mapping of the avirulence gene PRE1, a gene for host-species specificity in the blast fungus Magnaporthe grisea, Genome, 49, 873, 10.1139/g06-043 Ballini, 2008, A genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance, Mol. Plant Microbe Interact., 21, 859, 10.1094/MPMI-21-7-0859 Bonman, 1992, Breeding rice for resistance to pests, Annu. Rev. Phytopathol., 30, 507, 10.1146/annurev.py.30.090192.002451 Babujee, 2000, Molecular tools for characterization of rice blast pathogen, Magnaporthe grisea, population and molecular marker-assisted breeding for disease resistance, Curr. Sci., 78, 248 Farman, 2002, Analysis of the structure of the AVR1-CO39 avirulence locus in virulent rice-infecting isolates of Magnaporthe grisea, Mol. Plant Microbe Interact., 15, 6, 10.1094/MPMI.2002.15.1.6 Kang, 2001, Gain of virulence caused by insertion of a Pot3 transposon in a Magnaporthe grisea avirulence gene, Mol. Plant Microbe Interact., 14, 671, 10.1094/MPMI.2001.14.5.671 Orbach, 2000, A telomeric avirulence gene determines efficacy for the rice blast resistance gene Pi-ta, Plant Cell, 12, 2019, 10.1105/tpc.12.11.2019 Bohnert, 2004, A putative polyketide synthase peptide synthetase from Magnaporthe grisea signals pathogen attack to resistant rice, Plant Cell, 16, 2499, 10.1105/tpc.104.022715 Zhou, 2007, Instability of the Magnaporthe oryzae avirulence gene AVR-Pita alters virulence, Fungal Genet. Biol., 44, 1024, 10.1016/j.fgb.2007.02.003 Khang, 2008, Genome organization and evolution of the AVR-Pita avirulence gene family in the Magnaporthe grisea species complex, Mol. Plant Microbe Interact., 21, 658, 10.1094/MPMI-21-5-0658 Peyyala, 2006, Magnaporthe oryzae isolates causing gray leaf spot of perennial ryegrass possess a functional copy of AVR1-CO39 avirulence gene, Mol. Plant Pathol., 7, 157, 10.1111/j.1364-3703.2006.00325.x Hittalmani, 2000, Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice, Theor. Appl. Genet., 100, 1121, 10.1007/s001220051395 Fjellstrom, 2004, Development of DNA markers suitable for marker assisted selection of three Pi genes conferring resistance to multiple Pyricularia grisea pathotypes, Crop Sci., 44, 1790, 10.2135/cropsci2004.1790 McClung, 1997, Registration of ‘Jefferson’ rice, Crop Sci., 37, 629, 10.2135/cropsci1997.0011183X003700020058x Zeigler, 1995, The relationship between lineage and virulence in Pyricularia grisea in the Philippines, Phytopathology, 85, 443, 10.1094/Phyto-85-443 Gnanamanickam, 2000, Lineage-exclusion resistance breeding: pyramiding of blast resistance genes for management of rice blast in India, Adv. Rice Blast Res., 15, 172, 10.1007/978-94-015-9430-1_20 Dai, 2007, Recent advances in cloning and characterization of disease resistance genes in rice, J. Integr. Plant Biol., 49, 112, 10.1111/j.1744-7909.2006.00413.x Chen, 1996, Phenotypic characterization of the rice blast resistance gene Pi-2(t), Plant Dis., 80, 52, 10.1094/PD-80-0052 Qu, 2006, The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice, Genetics, 172, 1901, 10.1534/genetics.105.044891 Liu, 2007, Identification and fine mapping of Pi39(t), a major gene conferring the broad-spectrum resistance to Magnaporthe oryzae, Mol. Genet. Genomics, 278, 403, 10.1007/s00438-007-0258-5 Jeung, 2007, A novel gene, Pi40(t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance in rice, Theor. Appl. Genet., 115, 1163, 10.1007/s00122-007-0642-x Deng, 2006, Genetic characterization and fine mapping of the blast resistance locus Pigm(t) tightly linked to Pi2 and Pi9 in a broad-spectrum resistant Chinese variety, Theor. Appl. Genet., 113, 705, 10.1007/s00122-006-0338-7 Zhu, 2000, Genetic diversity and disease control in rice, Nature, 406, 718, 10.1038/35021046 Ishizaki, 2005, Breeding of blast resistant isogenic lines in rice variety ‘Koshihikari’ and evaluation of their characters, Breed. Sci., 55, 371, 10.1270/jsbbs.55.371 Takeuchi, 2006, Development of isogenic lines of rice cultivar Koshihikari with early and late heading by marker-assisted selection, Breed. Sci., 56, 405, 10.1270/jsbbs.56.405 Koizumi, 2004, Durable control of rice blast disease with multilines, 191 Chen, 2006, Genetic diversity of Magnaporthe grisea in China as revealed by DNA fingerprint haplotypes and pathotypes, J. Phytopathol., 154, 361, 10.1111/j.1439-0434.2006.01106.x Levy, 1991, DNA fingerprinting with a dispersed repeated sequence resolves pathotype diversity in the rice blast fungus, Plant Cell, 3, 95, 10.2307/3869203 Consolo, 2008, DNA fingerprint and pathotype diversity of Pyricularia oryzae populations from Argentina, Australas. Plant Pathol., 37, 357, 10.1071/AP08010 Sirithunya, 2008, Assessment of genetic diversity in Thai isolates of Pyricularia grisea by random amplification of polymorphic DNA, J. Phytopathol., 156, 196, 10.1111/j.1439-0434.2007.01341.x Chadha, 2005, Genetic diversity of Indian isolates of rice blast pathogen (Magnaporthe grisea) using molecular markers, Curr. Sci., 88, 1466 Sere, 2007, Genetic diversity of the blast fungus, Magnaporthe grisea (Hebert) Barr, in Burkina Faso, Afr. J. Biotechnol., 6, 2568, 10.5897/AJB2007.000-2410 George, 1998, Rapid population analysis of Magnaporthe grisea by using rep-PCR and endogenous repetitive DNA sequences, Phytopathology, 88, 223, 10.1094/PHYTO.1998.88.3.223 Chadha, 2005, Retrotransposon-microsatellite amplified polymorphism (REMAP) markers for genetic diversity assessment of the rice blast pathogen (Magnaporthe grisea), Genome, 48, 943, 10.1139/g05-045 Martin, 2000, Impacts of molecular diagnostic technologies on plant disease management, Annu. Rev. Phytopathol., 38, 207, 10.1146/annurev.phyto.38.1.207 Atkins, 2004, Fungal molecular diagnostics: a mini review, J. Appl. Genet., 45, 3 Schaad, 2003, Advances in molecular-based diagnostics in meeting crop biosecurity and phytosanitary issues, Annu. Rev. Phytopathol., 41, 305, 10.1146/annurev.phyto.41.052002.095435 Ashizawa, 2005, Effects of preinoculation with an avirulent isolate of Pyricularia grisea on infection and development of leaf blast lesions caused by virulent isolates on near-isogenic lines of Sasanishiki rice, J. Gen. Plant Pathol., 71, 345, 10.1007/s10327-005-0216-1 Manandhar, 1998, Suppression of rice blast by preinoculation with avirulent Pyricularia oryzae and the nonrice pathogen Bipolaris sorokiniana, Phytopathology, 88, 735, 10.1094/PHYTO.1998.88.7.735 Tsukamoto, 1999, Biological control of rice leaf blast with Exserohilum monoceras, a pathogen of Echinochloa species, Ann. Phytopathological Soc. Jpn., 65, 543, 10.3186/jjphytopath.65.543 Ohtaka, 2008, Suppression of rice blast using freeze-killed mycelia of biocontrol fungal candidate MKP5111B, J. Gen. Plant Pathol., 74, 101, 10.1007/s10327-007-0063-3 Karthikeyan, 2008, Biological control of Setaria blast (Magnaporthe grisea) with bacterial strains, Crop Prot., 27, 263, 10.1016/j.cropro.2007.05.013 Tendulkar, 2007, Isolation, purification and characterization of an antifungal molecule produced by Bacillus licheniformis BC98, and its effect on phytopathogen Magnaporthe grisea, Appl. Microbiol., 1, 2331, 10.1111/j.1365-2672.2007.03501.x Prabavathy, 2006, Control of blast and sheath blight diseases of rice using antifungal metabolites produced by Streptomyces sp PM5, Biol. Control, 39, 313, 10.1016/j.biocontrol.2006.07.011 Iwata, 2001, Probenazole – a plant defence activator, Pestic. Outlook, 12, 28, 10.1039/b100805f Kurahashi, 2001, Melanin biosynthesis inhibitors (MBIs) for control of rice blast, Pestic. Outlook, 12, 32, 10.1039/b100806o Uesugi, 2001, Fungal choline biosynthesis – a target for controlling rice blast, Pestic. Outlook, 12, 26, 10.1039/b100804h Iwai, 2007, Probenazole-induced accumulation of salicylic acid confers resistance to Magnaporthe grisea in adult rice plants, Plant Cell Physiol., 48, 915, 10.1093/pcp/pcm062 Sawada, 2004, Monitoring and characterization of Magnaporthe grisea isolates with decreased sensitivity to scytalone dehydratase inhibitors, Pest Manag. Sci., 60, 777, 10.1002/ps.858 Suzuki, 2007, Genetic analysis of Pyricularia grisea population by rep-PCR during development of resistance to scytalone dehydratase inhibitors of melanin biosynthesis, Plant Dis., 91, 176, 10.1094/PDIS-91-2-0176 Avila-Adame, 2003, Characterization of spontaneous mutants of Magnaporthe grisea expressing stable resistance to the QoI-inhibiting fungicide azoxystrobin, Curr. Genet., 42, 332, 10.1007/s00294-002-0356-1 Araki, 2005, Monitoring of the sensitivity of Magnaporthe grisea to metominostrobin 2001–2003: no emergence of resistant strains and no mutations at codon 143 or 129 of the cytochrome b gene, J. Pestic. Sci., 30, 203, 10.1584/jpestics.30.203 Kim, 2003, Field resistance to strobilurin (QoI) fungicides in Pyricularia grisea caused by mutations in the mitochondrial cytochrome b gene, Phytopathology, 93, 891, 10.1094/PHYTO.2003.93.7.891 Oh, 2000, A target-site-specific screening system for antifungal compounds on appressorium formation in Magnaporthe grisea, Phytopathology, 90, 1162, 10.1094/PHYTO.2000.90.10.1162 Kim, 2000, Efficient target-site assay of chemicals for melanin biosynthesis inhibition of Magnaporthe grisea, Plant Pathol. J., 16, 125 Ribot, 2008, Susceptibility of rice to the blast fungus, Magnaporthe grisea, J. Plant Physiol., 165, 114, 10.1016/j.jplph.2007.06.013 Bryan, 2000, tA single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta, Plant Cell, 12, 2033 Chen, 2006, A B-lectin receptor kinase gene conferring rice blast resistance, Plant J., 46, 794, 10.1111/j.1365-313X.2006.02739.x Bajaj, 2005, Recent advances in rice biotechnology-towards genetically superior transgenic rice, Plant Biotechnol. J., 3, 275, 10.1111/j.1467-7652.2005.00130.x Kathuria, 2007, Advances in transgenic rice biotechnology, Crit. Rev. Plant Sci., 26, 65, 10.1080/07352680701252809 Yara, 2007, Disease resistance against Magnaporthe grisea is enhanced in transgenic rice with suppression of omega-3 fatty acid desaturases, Plant Cell Physiol., 48, 1263, 10.1093/pcp/pcm107 Mei, 2006, Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection, Mol. Plant Microbe Interact., 19, 1127, 10.1094/MPMI-19-1127 Shimono, 2007, Rice WRKY45 plays a crucial role in benzothiadiazole-inducible blast resistance, Plant Cell, 19, 2064, 10.1105/tpc.106.046250 Takakura, 2008, Expression of a bacterial flagellin gene triggers plant immune responses and confers disease resistance in transgenic rice plants, Mol. Plant Pathol., 9, 525, 10.1111/j.1364-3703.2008.00477.x Shao, 2008, Expression of a harpin-encoding gene in rice confers durable nonspecific resistance to Magnaporthe grisea, Plant Biotechnol. J., 6, 73 Coca, 2006, Enhanced resistance to the rice blast fungus Magnaporthe grisea conferred by expression of a cecropin A gene in transgenic rice, Planta, 223, 392, 10.1007/s00425-005-0069-z Prasad, 2008, Transgenic indica rice expressing Mirabilis jalapa antimicrobial protein (Mj-AMP2) shows enhanced resistance to the rice blast fungus Magnaporthe oryzae, Plant Sci., 175, 364, 10.1016/j.plantsci.2008.05.015 Kawata, 2005, Broad-spectrum disease resistance in transgenic rice, 97 Quilis, 2007, A potato carboxypeptidase inhibitor gene provides pathogen resistance in transgenic rice, Plant Biotechnol. J., 5, 537, 10.1111/j.1467-7652.2007.00264.x Sasaki, 2007, Characterization of two rice peroxidase promoters that respond to blast fungus-infection, Mol. Genet. Genomics, 278, 709, 10.1007/s00438-007-0286-1 Gurr, 2005, Engineering plants with increased disease resistance: how are we going to express it?, Trends Biotechnol., 23, 283, 10.1016/j.tibtech.2005.04.009 Howard, 1996, Breaking and entering: host penetration by the fungal rice blast pathogen Magnaporthe grisea, Annu. Rev. Microbiol., 50, 491, 10.1146/annurev.micro.50.1.491 Wang, 1999, The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes, Plant J., 19, 55, 10.1046/j.1365-313X.1999.00498.x Zhou, 2006, The eight amino-acid differences within three leucine-rich repeats between Pi2 and Piz-t resistance proteins determine the resistance specificity to Magnaporthe grisea, Mol. Plant Microbe Interact., 19, 1216, 10.1094/MPMI-19-1216 Berruyer, 2003, Identification and fine mapping of Pi33, the rice resistance gene corresponding to the Magnaporthe grisea avirulence gene ACE1, Theor. Appl. Genet., 107, 1139, 10.1007/s00122-003-1349-2 Liu, 2007, The in silico map-based cloning of Pi36, a rice coiled-coil-nucleotide-binding site-leucine-rich repeat gene that confers race-specific resistance to the blast fungus, Genetics, 176, 2541, 10.1534/genetics.107.075465 Lin, 2007, The blast resistance gene Pi37 encodes a nucleotide binding site-leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1, Genetics, 177, 1871, 10.1534/genetics.107.080648 Chauhan, 2002, Genetic and physical mapping of a rice blast resistance locus, Pi-CO39(t), that corresponds to the avirulence gene AVR1-CO39 of Magnaporthe grisea, Mol. Genet. Genomics, 267, 603, 10.1007/s00438-002-0691-4 Sharma, 2005, High-resolution mapping, cloning and molecular characterization of the Pi-kh gene of rice, which confers resistance to Magnaporthe grisea, Mol. Genet. Genomics, 274, 569, 10.1007/s00438-005-0035-2 Fukuoka, S. et al. (2007) National Institute of Agrobiological Sciences, Japan. Rice blast disease gene pi21, resistance gene pi21 and utilisation thereof, Patent no. WO/2007/000880. PCT JP2006 Yang, 2008, Genetic variation of NBS-LRR class resistance genes in rice lines, Theor. Appl. Genet., 116, 165, 10.1007/s00122-007-0656-4 Jia, 2004, Rice Pi-ta gene confers resistance to the major pathotypes of the rice blast fungus in the United States, Phytopathology, 94, 296, 10.1094/PHYTO.2004.94.3.296 Collemare, 2008, Magnaporthe grisea avirulence gene ACE1 belongs to an infection-specific gene cluster involved in secondary metabolism, New Phytol., 179, 196, 10.1111/j.1469-8137.2008.02459.x Farman, 1998, Chromosome walking to the AVR1-CO39 avirulence gene of Magnaporthe grisea: discrepancy between the physical and genetic maps, Genetics, 150, 1049, 10.1093/genetics/150.3.1049