Advances and limitations of individual-based models to analyze and predict dynamics of mangrove forests: A review

Alongi, 2002, Present state and future of the world's mangrove forests, Environ. Conserv., 29, 331, 10.1017/S0376892902000231 Baldwin, 2001, Regeneration in fringe mangrove forests damaged by Hurricane Andrew, Plant Ecol., 157, 151, 10.1023/A:1013941304875 Ball, 1980, Patterns of secondary succession in a mangrove forest of southern Florida, Oecologia, 44, 226, 10.1007/BF00572684 Ball, 1996, Comparative ecophysiology of mangrove forest and tropical lowland moist rainforest Ball, 1998, Mangrove species richness in relation to salinity and waterlogging: a case study along the Adelaide River floodplain, northern Australia, Global Ecol. Biogeogr. Lett., 7, 73, 10.2307/2997699 Ball, 2002, Interactive effects of salinity and irradiance on growth: implications for mangrove forest structure along salinity gradients, Trends Ecol. Evol., 16, 126 Balmford, 2002, Economic reasons for conserving wild nature, Science, 297, 950, 10.1126/science.1073947 Bauer, 2004, Asymmetric competition as natural outcome of neighbour interactions among plants: results from the field-of-neighbourhood modelling approach, Plant Ecol., 170, 135, 10.1023/B:VEGE.0000019041.42440.ea Berger, 2000, A new approach to spatially explicit modelling of forest dynamics: spacing, ageing and neighbourhood competition of mangrove trees, Ecol. Model., 132, 287, 10.1016/S0304-3800(00)00298-2 Berger, 2002, Towards a standard for the individual-based modeling of plant populations: self-thinning and the field-of-neighborhood approach, Nat. Resour. Model., 15, 39, 10.1111/j.1939-7445.2002.tb00079.x Berger, 2003, The strength of competition among individual trees and the biomass-density trajectories of the cohort, Plant Ecol., 167, 89, 10.1023/A:1023965512755 Berger, 2004, Age-related decline in forest production: modelling the effects of growth limitation, neighbourhood competition and self-thinning, J. Ecol., 92, 846, 10.1111/j.0022-0477.2004.00911.x Berger, 2006, Modeling secondary succession of neotropical mangroves: causes and consequences of growth reduction in pioneer species, Perspect. Plant Ecol. Evol. Syst., 7, 243, 10.1016/j.ppees.2005.08.001 Bosire, 2008, Functionality of restored mangroves: A review, Aquat. Bot., 89, 251, 10.1016/j.aquabot.2008.03.010 Botkin, 1993 Botkin, 1993 Botkin, 1972, Some ecological consequences of a computer model of forest growth, J. Ecol., 60, 849, 10.2307/2258570 Brokaw, 2000, Niche versus chance and tree diversity in forest gaps, Trends Ecol. Evol., 15, 183, 10.1016/S0169-5347(00)01822-X Burns, 1985, The demographic of the temperate mangrove (Avicennia marina (Forsk. Vierh.) at its southern limit in New Zealand, Aust. J. Ecol., 10, 125, 10.1111/j.1442-9993.1985.tb00874.x Busing, 2004, Advances in spatial, individual-based modelling of forest dynamics, J. Veg. Sci., 15, 831 Calzadilla Pérez, 2002, Monitoring a recent delta formation in a tropical coastal wetland using remote sensing and GIS. Case study: Laguna de Tacarigua, Venezuela, Environ. Dev. Sustain., 4, 201, 10.1023/A:1020830809448 Cannicci, 2008, Faunistic impact on vegetation structure and ecosystem function in mangrove forests: A review, Aquat. Bot., 89, 186, 10.1016/j.aquabot.2008.01.009 Cardona-Olarte, 2006, Responses of neotropical mangrove seedlings grown in monoculture and mixed culture under treatments of hydroperiod and salinity, Hydrobiologia, 569, 325, 10.1007/s10750-006-0140-1 Castaneda-Moya, 2006, Mangrove zonation in the dry life zone of the Gulf of Fonseca, Honduras, Estuar. Coasts, 29, 751, 10.1007/BF02786526 Chen, 1998, A gap dynamic model of mangrove forest development along gradients of soil salinity and nutrient resources, J. Ecol., 86, 37, 10.1046/j.1365-2745.1998.00233.x Chen, 1999, Patterns of mangrove forest structure and soil nutrient dynamics along the Shark River estuary, Florida, Estuaries, 22, 955, 10.2307/1353075 Cintrón, 1990 Cintrón, 1978, Mangrove in arid environments in Puerto Rico and adjacent Islands, Biotropica, 10, 110, 10.2307/2388013 Clarke, 1995, The population dynamics of the mangrove Avicennia marina; demographic synthesis and predictive modelling, Hydrobiologia, 295, 83, 10.1007/BF00029114 Clarke, 2004, Effects of experimental canopy gaps on mangrove recruitment: lack of habitat partitioning may explain stand dominance, J. Ecol., 92, 2003, 10.1111/j.0022-0477.2004.00861.x Cohen, 2003, Temporal changes of mangrove vegetation boundaries in Amazonia: application of GIS and remote sensing techniques, Wetlands Ecol. Manage., 11, 223, 10.1023/A:1025007331075 Dahdouh-Guebas, 2000, Utilization of mangrove wood products around Mida Creek (Kenya) amongst subsistence and commercial users, Econ. Bot., 54, 513, 10.1007/BF02866549 Dahdouh-Guebas, 2000, Four decade vegetation dynamics in Sri Lankan mangroves as detected from sequential aerial photography: a case study in Galle, Bull. Mar. Sci., 67, 741 Dahdouh-Guebas, 2002, A synthesis of existent and potential mangrove vegetation structure dynamics from Kenyan, Sri Lankan and Mairitanian case-studies, Le Bulletin des Séances de l’Académy Royale des Sciences d’Outre-Mer, 48, 487 Dahdouh-Guebas, 2004, Human-impacted mangroves in Gazi (Kenya): predicting future vegetation based on retrospective remote sensing, social surveys, and distribution of trees, Mar. Ecol. Prog. Ser., 272, 77, 10.3354/meps272077 Dahdouh-Guebas, 2005, Transitions in ancient inland freshwater resource management in Sri Lanka affect biota and human populations in and around coastal lagoons, Curr. Biol., 15, 579, 10.1016/j.cub.2005.01.053 Dahdouh-Guebas, 2005, Qualitative distinction of congeneric and introgressive mangrove species in mixed patchy forest assemblages using high spatial resolution remotely sensed imagery (IKONOS), Syst. Biodivers., 2, 113, 10.1017/S1477200004001422 Dahdouh-Guebas, 2008, Long-term retrospection on mangrove development using transdisciplinary approaches: A review, Aquat. Bot., 89, 80, 10.1016/j.aquabot.2008.03.012 Davis, 2005, A conceptual model of ecological interactions in the mangrove estuaries of the Florida Everglades, Wetlands, 25, 832, 10.1672/0277-5212(2005)025[0832:ACMOEI]2.0.CO;2 DeAngelis, 1992 DeAngelis, 2005, Individual-based modeling of ecological and evolutionary processes, Annu. Rev. Ecol. Evol. Syst., 36, 147, 10.1146/annurev.ecolsys.36.102003.152644 Denslow, 1998, Treefall gap size effects on above- and below-ground processes in a tropical wet forest, J. Ecol., 86, 597, 10.1046/j.1365-2745.1998.00295.x Doyle, 1981, The role of disturbance in the gap dynamics of montane rain forest: an application of a tropical forest succession model, 56 Doyle, T.W., 1998. Chapter 6: modeling global change effects on coastal forests. In: Guntenspergen, G.R., Vairin, B.A. (Eds.), Vulnerability of coastal wetlands in the Southeastern United States: climate change research results, 1992–1997, BSR 1998-0002. Lafayette, USGS/BRD. Biological Science Report, pp. 67–79. Doyle, 1997, The frequency and intensity of Atlantic hurricanes and their influence on the structure of south Florida mangrove communities, 55 Doyle, 1995, Wind damage effects of Hurricane Andrew on mangrove communities along the southwest coast of Florida, USA, J. Coast. Res., 21, 159 Doyle, 2003, Chapter 12: modeling mangrove forest migration along the southwest coast of Florida under climate change, 211 Duke, 2001, Gap creation and regenerative processes driving diversity and structure of mangrove ecosystems, Wetlands Ecol. Manage., 9, 257, 10.1023/A:1011121109886 Duke, 1998, Factors influencing biodiversity and distributional gradients in mangroves, Global Ecol. Biogeogr. Lett., 7, 27, 10.2307/2997695 Duke, 2005, Herbicides implicated as the cause of severe mangrove dieback in the Mackay region, NE Australia: consequences for marine plant habitats of the GBR World Heritage Area, Mar. Pollut. Bull., 51, 308, 10.1016/j.marpolbul.2004.10.040 Dunning, 1995, Spatially explicit population models: current forms and future uses, Ecol. Appl., 5, 3, 10.2307/1942045 Ellison, 2002, Macroecology of mangroves: large-scale patterns and process in tropical coastal forests, Trends Ecol. Evol., 16, 181 Ellison, 2000, Testing patterns of zonation in mangroves: scale dependence and environmental correlates in the Sundarbans of Bangladesh, J. Ecol., 88, 813, 10.1046/j.1365-2745.2000.00500.x Feller, 1999, Light-gap creation in a Belizean red-mangrove forest by a wood-boring insect, Biotropica, 31, 607, 10.1111/j.1744-7429.1999.tb00408.x Feller, 2003, Nitrogen vs. phosphorus limitation across an ecotonal gradient in a mangrove forest, Biogeochemistry, 62, 145, 10.1023/A:1021166010892 Feller, 2003, Nitrogen limitation of growth and nutrient dynamics in a disturbed mangrove forest, Indian River Lagoon, Florida, Oecologia, 134, 405, 10.1007/s00442-002-1117-z Felton, 2006, Vegetation structure, phenology, and regeneration in the natural and anthropogenic tree-fall gaps of a reduced-impact logged subtropical Bolivian forest, For. Ecol. Manage., 235, 186, 10.1016/j.foreco.2006.08.011 Field, 1998, Rehabilitation of mangrove ecosystems: an overview, Mar. Pollut. Bull., 37, 383, 10.1016/S0025-326X(99)00106-X Field, 1999, Mangrove rehabilitation: choice and necessity, Hydrobiologia, 413, 47, 10.1023/A:1003863415354 Fromard, 1998, Structure, above-ground biomass and dynamics of mangrove ecosystems: new data from French Guiana, Oecologia, 115, 39, 10.1007/s004420050489 Fromard, 2004, Half a century of dynamic coastal change affecting mangrove shorelines of French Guiana. A case study based on remote sensing data analyses and field surveys, Mar. Geol., 208, 265, 10.1016/j.margeo.2004.04.018 Glaser, 2003, Interrelations between mangrove ecosystem, local economy and social sustainability in Caeté Estuary, North Brazil, Wetlands Ecol. Manage., 11, 265, 10.1023/A:1025015600125 Gosz, 1992, Gradient analysis of ecological change in time and space: implications for forest management, Ecol. Appl., 2, 248, 10.2307/1941859 Grimm, 1999, Ten years of individual-based modelling in ecology: what have we learned and what could we learn in the future?, Ecol. Model., 115, 129, 10.1016/S0304-3800(98)00188-4 Grimm, 2005 Grimm, 2005, Pattern-oriented modeling of agent-based complex systems: lessons from ecology, Science, 310, 987, 10.1126/science.1116681 Grimm, 2006, A standard protocol for describing individual-based and agent-based models, Ecol. Model., 198, 115, 10.1016/j.ecolmodel.2006.04.023 Hernández-Cornejo, 2005, Remote sensing and ethnobotanical assessment of the mangrove forest changes in the Navachiste-San Ignacio-Macapule lagoon complex, Sinaloa, Mexico, Ecol. Soc., 10, 16, 10.5751/ES-01286-100116 Hölker, 2002, Concepts of scales, hierarchies and emergent properties in ecological models, 7 Huston, 1988, New computer models unify ecological theory, BioScience, 38, 682, 10.2307/1310870 Huston, 1994 Kairo, 2002, Regeneration status of mangrove forests in Mida Creek, Kenya: a compromised or secured future?, Ambio, 31, 562, 10.1579/0044-7447-31.7.562 Keane, 2001, Plant mortality in gap models, Climatic Change, 51, 509, 10.1023/A:1012539409854 Khurana, 2006, Impact of life-history traits on response of seedlings of five tree species of tropical dry forest to shade, J. Trop. Ecol., 22, 653, 10.1017/S0266467406003518 Komiyama, 1987, Root biomass of a mangrove forest in southern Thailand. 1. Estimation by the trench method and the zonal structure of root biomass, J. Trop. Ecol., 3, 97, 10.1017/S0266467400001826 Komiyama, 2008, Allometry, biomass, and productivity of mangrove forests: A review, Aquat. Bot., 89, 128, 10.1016/j.aquabot.2007.12.006 Kovacs, 2001, Mapping disturbances in a mangrove forest using multi-date Landsat TM imagery, Environ. Manage., 27, 763, 10.1007/s002670010186 Krauss, 2005, Woody debris in the mangrove forests of south Florida, Biotropica, 37, 9, 10.1111/j.1744-7429.2005.03058.x Krauss, 2008, Environmental drivers in mangrove establishment and early development: A review, Aquat. Bot., 89, 105, 10.1016/j.aquabot.2007.12.014 Kristensen, 2008, Organic carbon dynamics in mangrove ecosystems: A review, Aquat. Bot., 89, 201, 10.1016/j.aquabot.2007.12.005 Lewis, 1982, Mangrove forests, 154 Liu, 1995, Individual-based simulation models for forest succession and management, For. Ecol. Manage., 73, 157, 10.1016/0378-1127(94)03490-N Lopez-Hoffman, 2007, Salinity and light interactively affect neotropical mangrove seedlings at the leaf and whole plant levels, Oecologia, 150, 545, 10.1007/s00442-006-0563-4 Lovelock, 2003, Photosynthetic performance and resource utilization of two mangrove species coexisting in a hypersaline scrub forest, Oecologia, 134, 455, 10.1007/s00442-002-1118-y Lucas, 2002, Use of stereo aerial photography for quantifying changes in the extent and height of mangroves in tropical Australia, Wetlands Ecol. Manage., 10, 159, 10.1023/A:1016547214434 Lugo, 1980, Mangrove ecosystems: successional or steady state?, Trop. Succession, 12, 65 Lugo, 1997, Old-growth mangrove forests in the United States, Conserv. Biol., 11, 1, 10.1046/j.1523-1739.1997.96012.x Lugo, 2000, Effects and outcomes of Caribbean hurricanes in a climate change scenario, Sci. Total Environ., 262, 243, 10.1016/S0048-9697(00)00526-X Lugo, 1974, The ecology of mangroves, Annu. Rev. Ecol. Syst., 5, 39, 10.1146/annurev.es.05.110174.000351 Lugo, 1976, Mangrove ecosystem analysis, 113 Macintosh, 2002, Mangrove rehabilitation and intertidal biodiversity: a study in the Ranong mangrove ecosystem, Thailand, Estuar. Coast. Shelf Sci., 3, 331, 10.1006/ecss.2001.0896 Matthijs, 1999, Mangrove species zonation and soil redox state, sulfide concentration and salinity in Gazi Bay (Kenya), a preliminary study, Mangroves Salt Marshes, 3, 243, 10.1023/A:1009971023277 McKee, 1993, Soil physicochemical patterns and mangrove species distribution—reciprocal effects?, J. Ecol., 81, 477, 10.2307/2261526 McKee, 1988, Reexamination of pore water sulfide concentrations and redox potentials near the aerial roots of Rhizophora mangle and Avicennia germinans, Am. J. Bot., 5, 1352, 10.1002/j.1537-2197.1988.tb14196.x Menezes, 2003, Annual growth rings and long-term growth patterns of mangrove trees from the Bragança peninsula, North Brazil, Wetlands Ecol. Manage., 11, 233, 10.1023/A:1025059315146 Monserud, 1999, Modeling individual tree mortality for Austrian tree species, For. Ecol. Manage., 113, 109, 10.1016/S0378-1127(98)00419-8 Moorcroft, 2001, A method for scaling vegetation dynamics: the ecosystem demography model, Ecol. Monogr., 71, 557, 10.1890/0012-9615(2001)071[0557:AMFSVD]2.0.CO;2 Mueller-Dombois, 1991, The mosaic theory and the spatial dynamics of natural dieback and regeneration in Pacific forests, 46 Pacala, 1993, Forest models defined by field measurements. I. The design of a northeastern forest simulator, Can. J. For. Res., 23, 1980, 10.1139/x93-249 Perry, 2006, Spatial modelling of vegetation change in dynamic landscapes: a review of methods and applications, Prog. Phys. Geogr., 30, 47, 10.1191/0309133306pp469ra Pickett, 1989, The ecological concept of disturbance and its expression at various hierarchical levels, Oikos, 54, 129, 10.2307/3565258 Pickett, 1985 Piou, 2006, Zonation patterns of Belizean offshore mangrove forests 41 years after a catastrophic hurricane, Biotropica, 38, 365, 10.1111/j.1744-7429.2006.00156.x Piou, C., Berger, U., Hildenbrandt, H., Feller, C.I., in press. Modeling the effect of hurricane disturbances on mangrove forest diversity. J. Veg. Sci. Piou, 2007, Simulating cryptic movements of a mangrove crab: recovery phenomena after small scale fishery, Ecol. Model., 205, 110, 10.1016/j.ecolmodel.2007.02.008 Piou, C., 2007. Patterns and individual-based modeling of spatial competition within two main components of Neotropical mangrove ecosystems. Ph.D. Thesis. University of Bremen, Germany, p. 246. Ramachandran, 2005, Ecological impact of tsunami on Nicobar Islands (Camorta, Katchal, Nancowry and Trinkat), Curr. Sci., 89, 195 Ray, 2000, Network analysis of a benthic food web model of a partly reclaimed island in the Sundarban mangrove ecosystem in India, J. Biol. Syst., 8, 263, 10.1142/S0218339000000171 Remmert, 1991, The mosaic-cycle concept of ecosystems: an overview, Ecol. Stud., 85, 1, 10.1007/978-3-642-75650-4_1 Reynolds, 2005, Improving competition representation in theoretical models of self-thinning: a critical review, J. Ecol., 93, 362, 10.1111/j.1365-2745.2005.00976.x Rivera-Monroy, 1995, Direct denitrification in mangrove sediments in Terminos Lagoon, Mexico, Mar. Ecol. Prog. Ser., 126, 97, 10.3354/meps126097 Rivera-Monroy, 1996, The relative role of denitrification and immobilization in the fate of inorganic nitrogen in mangrove sediments, Limnol. Oceanogr., 41, 284, 10.4319/lo.1996.41.2.0284 Rivera-Monroy, 2004, Spatial variability of soil nutrients in disturbed riverine mangrove forests at different stages of regeneration in the San Juan River estuary, Venezuela, Estuaries, 27, 44, 10.1007/BF02803559 Ross, 2006, Early post-hurricane stand development in Fringe mangrove forests of contrasting productivity, Plant Ecol., 185, 283, 10.1007/s11258-006-9104-9 Roth, 1992, Hurricanes and mangrove regeneration: effects of Hurricane Joan, October 1988, on the vegetation of Isla del Venado, Bluefields, Nicaragua, Biotropica, 24, 375, 10.2307/2388607 Scholander, 1962, Salt balance in mangroves, Plant Physiol., 37, 722, 10.1104/pp.37.6.722 Sherman, 2000, Small-scale disturbance and regeneration dynamics in a neotropical mangrove forest, J. Ecol., 88, 165, 10.1046/j.1365-2745.2000.00439.x Sherman, 2001, Hurricane impacts on a mangrove forest in the Dominican Republic: damage patterns and early recovery, Biotropica, 33, 393, 10.1111/j.1744-7429.2001.tb00194.x Shugart, 1984 Simard, 2006, Mapping height and biomass of mangrove forests in Everglades National Park with SRTM elevation data, Photogramm. Eng. Rem. Sens., 72, 299, 10.14358/PERS.72.3.299 Smith, 1992, Forest structure, 101 Smith, 1994, Mangroves, hurricanes, and lightning strikes, BioScience, 44, 256, 10.2307/1312230 Thampanya, 2002, Colonization success of common Thai mangrove species as a function of shelter from water movement, Mar. Ecol. Progr. Ser., 237, 111, 10.3354/meps237111 Thampanya, U., 2006. Mangroves and sediment dynamics along the coasts of southern Thailand. Dissertation. Wageningen University. Thom, 1967, Mangrove ecology and deltaic geomorphology: Tabasco, Mexico, J. Ecol., 55, 301, 10.2307/2257879 Thom, 1984, Coastal landforms and geomorphic processes, 3 Tilman, 1988 Twilley, 1995 Twilley, 1997, Mangrove wetlands, 445 Twilley, 1992, Carbon sinks in mangroves and their implications to carbon budget of tropical coastal ecosystems, Water Air Soil Pollut., 64, 265, 10.1007/BF00477106 Twilley, 1999, Formulating a model of mangrove succession in the Caribbean and Gulf of Mexico with emphasis on factors associated with global climate change, Curr. Top. Wetland Biogeochem., 3, 118 Twilley, 1999, Adapting an ecological mangrove model to simulate trajectories in restoration ecology, Mar. Pollut. Bull., 37, 404, 10.1016/S0025-326X(99)00137-X Twilley, 2005, Developing performance measures of mangrove wetlands using simulation models of hydrology, nutrient biogeochemistry, and community dynamics, J. Coast. Res., 40, 79 Urban, 1987, Landscape ecology: a hierarchical perspective can help scientists understand spatial patterns, BioScience, 37, 119, 10.2307/1310366 Vega-Cendejas, 2001, Energy fluxes in a mangrove ecosystem from coastal lagoon in Yucatan peninsula, Mexico, Ecol. Model., 20, 119, 10.1016/S0304-3800(00)00421-X Verheyden, 2005, High-resolution time series of vessel density in Kenyan mangrove trees reveal a link with climate, New Phytol., 167, 425, 10.1111/j.1469-8137.2005.01415.x Walters, 2005, Patterns of local wood use and cutting of Philippine mangrove forests, Econ. Bot., 59, 66, 10.1663/0013-0001(2005)059[0066:POLWUA]2.0.CO;2 Walters, 2008, Ethnobiology, socio-economics and management of mangrove forests: A review, Aquat. Bot., 89, 220, 10.1016/j.aquabot.2008.02.009 Wang, 2004, Comparison of IKONOS and QuickBird images for mapping mangrove species on the Caribbean coast of Panama, Rem. Sens. Environ., 91, 432, 10.1016/j.rse.2004.04.005 Ward, 2006, Regional processes in mangrove ecosystems: spatial scaling relationships, biomass, and turnover rates following catastrophic disturbance, Hydrobiologia, 569, 517, 10.1007/s10750-006-0153-9 Whelan, K.R.T., 2005. The successional dynamics of lightning-initiated canopy gaps in the mangrove forests of Shark River, Everglades National Park, USA. Ph.D. Thesis. Florida International University. Wolanski, 1992, Hydrodynamics of mangrove swamps and their coastal waters, Hydrobiologia, 247, 141, 10.1007/BF00008214 Wolff, 2006, Biomass flow structure and resource potential of two mangrove estuaries: insights from comparative modeling in Costa Rica and Brazil, Revista de Biologia Tropical, 54, 69 Woodroffe, 1992, Mangrove sediments and geomorphology, 7 Wullschleger, 2001, Below-ground processes in gap models for simulating forest response to global change, Climatic Change, 51, 449, 10.1023/A:1012570821241