Adaptive evolution of rotavirus VP7 and NSP4 genes in different species
Tài liệu tham khảo
Anisimova, 2001, The accuracy and power of likelihood ratio tests to detect positive selection at amino acid sites, J. Mol. Biol., 18, 1585, 10.1093/oxfordjournals.molbev.a003945
Browne, 2000, Membrane destabilizing activity of rotavirus NSP4 is mediated by a membrane2proximal amphipathic domain, J. Genet. Virol., 81, 1955, 10.1099/0022-1317-81-8-1955
Dyall Smith, 1986, Location of the major antigenic sites involved in rotavirus serotype2specific neutralization, Proc. Natl. Acad. Sci., 83, 3465, 10.1073/pnas.83.10.3465
Green, 1988, Prediction of human rotavirus serotype by nucleotide sequence analysis of VP7 protein gene, J. Virol., 62, 1819, 10.1128/JVI.62.5.1819-1823.1988
Green, 1989, Sequence analysis of the gene encoding the serotype-specific glycoprotein (VP7) of two new human rotavirus serotypes, J. Virol., 168, 429, 10.1016/0042-6822(89)90289-4
Higgins, 1998, CLUSTAL: A package for performing multiple sequence alignment on a microcomputer, Gene, 73, 237, 10.1016/0378-1119(88)90330-7
Lundgren, 2001, Pathogenesis of rotavirus diarrhea, Microbes Infect., 3, 1145, 10.1016/S1286-4579(01)01475-7
Massingham, 2005, Detecting Amino Acid Sites Under Positive Selection and Purifying Selection, Genetics, 169, 1753, 10.1534/genetics.104.032144
Mirazimi, 1996, Effect of brefeldin A on rotavirus assemble and oligosaccharide processing, J. Virol., 217, 554, 10.1006/viro.1996.0150
Nei, 2000
Nielsen, 2005, Molecular signatures of natural selection, Annu. Rev. Genet., 39, 197, 10.1146/annurev.genet.39.073003.112420
Prasad, 1988, Three-dimensional structure of rotavirus, J. Mol. Biol., 199, 269, 10.1016/0022-2836(88)90313-0
Saitou, 1987, The neighbor-joining method: A new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406
Sabeti, 2005, The case for selection at CCR5-Delta32, PLoS Biol., 3, e378, 10.1371/journal.pbio.0030378
Seabury, 2004, Prion protein gene (PRNP) variants and evidence for strong purifying selection in functionally important regions of bovine exon 3, Proc. Natl. Acad. Sci., 101, 15142, 10.1073/pnas.0406403101
Tamura, 2007, MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0, Mol. Biol. Evol., 24, 1596, 10.1093/molbev/msm092
Tian, 1996, The rotavirus nonstructural glycoprotein NSP4 possesses membrane destabilization activity, J. Virol., 70, 6973, 10.1128/JVI.70.10.6973-6981.1996
Yang, 2004, Molecular Evolution of the Hepatitis Delta Virus Antigen Gene: Recombination or Positive Selection?, J. Mol. Biol., 59, 815
Yang, 2005, The power of phylogenetic comparison in revealing protein function, Proc. Natl. Acad. Sci., 102, 3179, 10.1073/pnas.0500371102
Yang, 1997, PAML: a program package for phylogenetic analysis by maximum likelihood, Comput. Appl. Biosci., 13, 555
Yang, 1998, Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution, J. Mol. Biol., 15, 568
Yang, 2000, Codon-substitution models for heterogeneous selection pressure at amino acid sites, Genetics, 155, 431, 10.1093/genetics/155.1.431
Yang, 2005, Bayes empirical bayes inference of amino acid sites under positive selection, J. Mol. Biol., 22, 1107, 10.1093/molbev/msi097
Yang, 2002, Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages, Mol. Biol. Evol., 19, 908, 10.1093/oxfordjournals.molbev.a004148
Zhang, 2000, A functional NSP4 enterotoxin peptidesecreted from rotavirus-infected cells, J. Virol., 74, 11663, 10.1128/JVI.74.24.11663-11670.2000
Zhang, 2005, Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level, J. Mol. Biol., 22, 2472, 10.1093/molbev/msi237