Adapting to environmental changes using specialized paralogs
Tài liệu tham khảo
Gogarten, 1999, Orthologs, paralogs and genome comparisons, Curr. Opin. Genet. Dev., 9, 630, 10.1016/S0959-437X(99)00029-5
Pushker, 2004, Comparative genomics of gene-family size in closely related bacteria, Genome Biol., 5, R27, 10.1186/gb-2004-5-4-r27
Mira, 2006, The Neolithic revolution of bacterial genomes, Trends Microbiol., 14, 200, 10.1016/j.tim.2006.03.001
Mongodin, 2005, The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea, Proc. Natl. Acad. Sci. U. S. A., 102, 18147, 10.1073/pnas.0509073102
Anton, 2002, Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds., Int. J. Syst. Evol. Microbiol., 52, 485, 10.1099/00207713-52-2-485
Oren, 1999, Bioenergetic aspects of halophilism, Microbiol. Mol. Biol. Rev., 63, 334, 10.1128/MMBR.63.2.334-348.1999
Oren, 2005, How to be moderately halophilic with broad salt tolerance: clues from the genome of Chromohalobacter salexigens, Extremophiles, 9, 275, 10.1007/s00792-005-0442-7
Madern, 2000, Halophilic adaptation of enzymes, Extremophiles, 4, 91, 10.1007/s007920050142
Bonete, 2003, Occurrence of two different glutamate dehydrogenase activities in the halophilic bacterium Salinibacter ruber, FEMS Microbiol. Lett., 226, 181, 10.1016/S0378-1097(03)00592-5
Mira, 2005, The silencing of pseudogenes, Mol. Biol. Evol., 22, 2135, 10.1093/molbev/msi209
Mukhopadhyay, 2006, Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach, J. Bacteriol., 188, 4068, 10.1128/JB.01921-05
Milev, 2005, Enthalpic and entropic effects of salt and polyol osmolytes on site-specific protein-DNA association: the integrase Tn916-DNA complex, Biochemistry, 44, 285, 10.1021/bi048907n
Koonin, 2005, Orthologs, paralogs, and evolutionary genomics, Annu. Rev. Genet., 39, 309, 10.1146/annurev.genet.39.073003.114725
Berezovsky, 2007, Positive and negative design in stability and thermal adaptation of natural proteins, PLoS Comput. Biol., 23, e52, 10.1371/journal.pcbi.0030052
Gardy, 2006, Methods for predicting bacterial protein subcellular localization, Nat. Rev. Microbiol., 4, 741, 10.1038/nrmicro1494
Kapatai, 2006, All three chaperonin genes in the archaeon Haloferax volcanii are individually dispensable, Mol. Microbiol., 61, 1583, 10.1111/j.1365-2958.2006.05324.x
Sanchez-Sutil, 2007, Differential expression of the three multicopper oxidases from Myxococcus xanthus, J. Bacteriol., 189, 4887, 10.1128/JB.00309-07
López-López, 2007, Intragenomic 16S rDNA divergence in Haloarcula marismortui is an adaptation to different temperatures, J. Mol. Evol., 65, 687, 10.1007/s00239-007-9047-3
Makarova, 2006, Comparative genomics of the lactic acid bacteria, Proc. Natl. Acad. Sci. U. S. A., 103, 15611, 10.1073/pnas.0607117103
Makarova, 2007, Evolutionary genomics of lactic acid bacteria, J. Bacteriol., 189, 1199, 10.1128/JB.01351-06
Ihmels, 2007, Backup without redundancy: genetic interactions reveal the cost of duplicate gene loss, Mol Syst Biol., 3, 86, 10.1038/msb4100127
Krakauer, 2002, Redundancy, antiredundancy, and the robustness of genomes, Proc. Natl. Acad. Sci. U. S. A., 99, 1405, 10.1073/pnas.032668599
de Visser, 2003, Perspective: Evolution and detection of genetic robustness, Evolution Int. J. Org. Evolution, 57, 1959
Gevers, 2004, Gene duplication and biased functional retention of paralogs in bacterial genomes, Trends Microbiol., 12, 148, 10.1016/j.tim.2004.02.007
Francino, 2005, An adaptive radiation model for the origin of new gene functions, Nat. Genet., 37, 573, 10.1038/ng1579