Actinobacterial diversity from marine sediments collected in Mexico

Antonie van Leeuwenhoek - Tập 95 Số 2 - Trang 111-120 - 2009
Luís A. Maldonado1, Dulce Fragoso-Yáñez1, Adriana Pérez-García1, Judith Rosellón-Druker1, Erika T. Quintana2
1Instituto de Ciencias del Mar y Limnología (ICMyL), Universidad Nacional Autónoma de México (UNAM), 04510, Mexico, DF, Mexico
2Instituto Politécnico Nacional (IPN), Centro Interdisciplinario de Investigaciones y Estudios sobre Medio Ambiente y Desarrollo (CIIEMAD), 07340, Mexico, DF, Mexico

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Tài liệu tham khảo

Baltz RH (2007) Antimicrobials from actinomycetes: back to the future. Microbe 2:125–131

Battershill C, Jaspars M, Long P (2005) Marine biodiversity: new drugs from the ocean depths. Biologist 52:107–114

Bérdy J (2005) Bioactive microbial metabolites: a personal view. J Antibiot 58:1–26

Blunt JW, Copp BR, Munro MHG, Northcote PT, Prinsep MR (2007) Marine natural products. Nat Prod Rep 24:31–86. doi: 10.1039/b603047p

Bredholt H, Galatenko OA, Engelhardt K, Fjærvik E, Terekhova LP, Zotchev SB (2007) Rare actinomycete bacteria from the shallow water sediments of the Trondheim fjord, Norway: isolation, diversity and biological activity. Environ Microbiol 9:2756–2764. doi: 10.1111/j.1462-2920.2007.01387.x

Chun J, Goodfellow M (1995) A phylogenetic analysis of the genus Nocardia with 16S rDNA gene sequences. Int J Syst Bacteriol 45:240–245

Duangmal K, Ward AC, Goodfellow M (2005) Selective isolation of members of the Streptomyces violaceoruber clade from soil. FEMS Microbiol Lett 245:321–327. doi: 10.1016/j.femsle.2005.03.028

Fehling RH, Buchanan GO, Mincer TJ, Kauffman CA, Jensen PR, Fenical W (2003) Salinosporamide A: a highly cytotoxic proteasome inhibitor from a novel microbial source, a marine bacterium of the new genus Salinospora. Angew Chem Int Ed 42:355–357. doi: 10.1002/anie.200390115

Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791. doi: 10.2307/2408678

Fiedler H-P, Bruntner C, Bull AT, Ward AC, Goodfellow M, Potterat O, Pudar C, Mihm G (2005) Marine actinomycetes as a source of novel secondary metabolites. Antonie Van Leeuwenhoek 87:37–42. doi: 10.1007/s10482-004-6538-8

Gontang EA, Fenical W, Jensen PR (2007) Phylogenetic diversity of gram positive bacteria cultured from marine sediments. Appl Environ Microbiol 73:3272–3282. doi: 10.1128/AEM.02811-06

Goodfellow M, Maldonado LA (2006) The families Dietziaceae, Gordoniaceae, Nocardiaceae and Tsukamurellaceae. In: Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E (eds) The prokaryotes. Archaea. Bacteria: firmicutes, actinomycetes. Springer, New York, pp 843–888

Gordon RE, Mihm JM (1962) Identification of Nocardia caviae (Erikson) nov. comb. Ann N Y Acad Sci USA 98:628–636. doi: 10.1111/j.1749-6632.1962.tb30585.x

Hughes CC, Prieto-Davo A, Jensen PR, Fenical W (2008) The marynopyrroles, antibiotics of an unprecedented structure class from a marine Streptomyces sp. Org Lett 10:629–631. doi: 10.1021/ol702952n

Jensen PR, Gontang E, Mafnas C, Mincer TC, Fenical W (2005a) Culturable marine actinomycete diversity from tropical Pacific Ocean sediments. Environ Microbiol 7:1039–1048. doi: 10.1111/j.1462-2920.2005.00785.x

Jensen PR, Mincer TJ, Williams PG, Fenical W (2005b) Marine actinomycete diversity and natural product discovery. Antonie Van Leeuwenhoek 87:43–48. doi: 10.1007/s10482-004-6540-1

Jones KL (1949) Fresh isolates of actinomycetes in which the presence of sporogeneous aerial mycelia is a fluctuating characteristic. J Bacteriol 57:141–145

Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism, vol 3. Academic Press, New York, pp 21–132

Kawamoto I (1989) Genus Micromonospora. In: Williams ST, Sharpe ME, Holt JG (eds) Bergey’s manual of systematic bacteriology. Williams and Wilkins, Baltimore, pp 2442–2450

Küster E, Williams ST (1964) Selection of media for isolation of streptomycetes. Nature 202:928–929. doi: 10.1038/202928a0

Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, New York, pp 115–175

Magarvey NA, Keller JM, Bernan V, Dworkin M, Sherman DH (2004) Isolation and characterisation of novel marine-derived actinomycete taxa rich in bioactive metabolites. Appl Environ Microbiol 70:7520–7529. doi: 10.1128/AEM.70.12.7520-7529.2004

Maldonado LA, Fenical W, Jensen PR, Kauffman CA, Mincer TJ, Ward AC, Bull AT, Goodfellow M (2005a) Salinispora arenicola gen. nov., sp. nov. and Salinispora tropica sp. nov., obligate marine actinomycetes belonging to the family Micromonosporaceae. Int J Syst Evol Microbiol 55:1759–1766. doi: 10.1099/ijs.0.63625-0

Maldonado LA, Stach JEM, Pathom-aree W, Ward AC, Bull AT, Goodfellow M (2005b) Diversity of cultivable Actinobacteria in geographically widespread marine sediments. Antonie Van Leeuwenhoek 87:11–18. doi: 10.1007/s10482-004-6525-0

Maldonado LA, Stach JEM, Ward AC, Bull AT, Goodfellow M (2008) Characterisation of micromonosporae from aquatic environments using molecular taxonomic methods. Antonie Van Leeuwenhoek 94(2):289–298. doi: 10.1007/s10482-008-9244-0

Mincer TJ, Jensen PR, Kauffman CA, Fenical W (2002) Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments. Appl Environ Microbiol 68:5005–5011. doi: 10.1128/AEM.68.10.5005-5011.2002

Riedlinger J, Reike A, Zähner H, Krismer B, Bull AT, Maldonado LA, Ward AC, Goodfellow M, Bister B, Bischoff D, Fiedler H-P (2004) Abyssomicins, inhibitors of the para-aminobenzoic acid. J Antibiot 57:271–279

Rowbotham TJ, Cross T (1977) Rhodococcus coprophilus sp. nov.: an aerobic nocardioform actinomycete belonging to the ‘rhodochrous’ complex. J Gen Microbiol 100:123–138

Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

Sanglier JJ, Whitehead D, Saddler GS, Ferguson EV, Goodfellow M (1992) Pyrolisis mass spectrometry as a method for the classification, identification and selection of actinomycetes. Gene 115:235–242. doi: 10.1016/0378-1119(92)90564-6

Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:317–327

Stach JEM, Maldonado LA, Masson DG, Ward AC, Goodfellow M, Bull AT (2003) New primers for the class Actinobacteria: application to marine and terrestrial environments. Environ Microbiol 5:828–841. doi: 10.1046/j.1462-2920.2003.00483.x

Stackebrandt E, Rainey FA, Ward-Rainey NL (1997) Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47:479–491

Staneck JL, Roberts GD (1974) Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28:226–231

Strohl WR (2005) Antimicrobials. In: Bull AT (ed) Microbial diversity and bioprospecting. ASM, Washington DC, pp 336–355

Tan GYA, Ward AC, Goodfellow M (2006) Exploration of Amycolatopsis diversity in soil using genus-specific primers and novel selective media. Syst Appl Microbiol 29:557–569. doi: 10.1016/j.syapm.2006.01.007

Taylor LH, Latham SM, Woolhouse MEJ (2001) Risk factors for human disease emergence. Philos Trans R Soc Lond B Biol Sci 356:983–989. doi: 10.1098/rstb.2001.0888

Van de Peer Y, De Wachter R (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft windows environment. Comput Appl Biosci 10:569–570

Vickers JC, Williams ST, Ross GW (1984) A taxonomic approach to selective isolation of streptomycetes from soil. In: Ortiz-Ortiz L, Bojalil LF, Yakoleff V (eds) Biological, biochemical and biomedical aspects of actinomycetes. Academic Press, London, pp 553–561

Watve MG, Tickoo R, Jog MM, Bhole BD (2001) How many antibiotics are produced by the genus Streptomyces?. Arch Microbiol 176:386–390. doi: 10.1007/s002030100345

Weyland H (1969) Actinomycetes in North Sea and Atlantic Ocean sediment. Nature 223:858. doi: 10.1038/223858a0

Williams ST, Goodfellow M, Alderson A (1989) Genus Streptomyces Waksman and Henrici 1943, 339AL. In: Williams ST, Sharpe ME, Holt JG (eds) Bergey’s manual of systematic bacteriology. Williams and Wilkins, Baltimore, pp 2452–2492