Accurate determination of microbial diversity from 454 pyrosequencing data

Nature Methods - Tập 6 Số 9 - Trang 639-641 - 2009
Christopher Quince1, Anders Lanzén2, Thomas P. Curtis3, Russell J. Davenport3, Neil Hall4, Ian M. Head3, L. F. Read3, William T. Sloan1
1Department of Civil Engineering, Rankine Building, University of Glasgow, Glasgow, UK.
2Department of Biology, University of Bergen, Bergen, Norway
3School of Civil Engineering and Geosciences, University of Newcastle upon Tyne, Newcastle upon Tyne, UK
4School of Biological Sciences, Univ. of Liverpool, Liverpool, UK.

Tóm tắt

Từ khóa


Tài liệu tham khảo

Margulies, M. et al. Nature 437, 376–380 (2005).

Quinlan, A.R., Stewart, D.A., Stromberg, M.P. & Marth, G.T. Nat. Methods 5, 179–181 (2008).

Vacic, V., Jin, H., Zhu, J.-K. & Lonardi, S. Pac. Symp. Biocomput. 13, 75–86 (2008).

Fraley, C. & Raftery, A.E. Comput. J. 41, 578–588 (1998).

Schloss, P.D. & Handelsman, J. Appl. Environ. Microbiol. 71, 1501–1506 (2005).

Huber, J.A. et al. Science 318, 97–100 (2007).

Roesch, L.F. et al. ISME J. 1, 283–290 (2007).

Sogin, M.L. et al. Proc. Natl. Acad. Sci. USA 103, 12115–12120 (2006).

Quince, C., Curtis, T.P. & Sloan, W.T. ISME J. 2, 997–1006 (2008).

Wang, G.C.Y. & Wang, Y. Microbiology 142, 1107–1114 (1996).

Ashelford, K.E., Chuzhanova, N.A., Fry, J.C., Jones, A.J. & Weightman, A.J. Appl. Environ. Microbiol. 72, 5734–5741 (2006).

Cole, J.R. et al. Nucleic Acids Res. 37, D141–D145 (2009).

Liu, Z.Z., DeSantis, T.Z., Andersen, G.L. & Knight, R. Nucleic Acids Res. 36, 11 (2008).

Lozupone, C. & Knight, R. Appl. Environ. Microbiol. 71, 8228–8235 (2005).

Eriksson, N. et al. PLOS Comput. Biol. 4, 13 (2008).

Needleman, S.B. & Wunsch, C.D. J. Mol. Biol. 48, 443–453 (1970).

Katoh, K., Kuma, K., Toh, H. & Miyata, T. Nucleic Acids Res. 33, 511–518 (2005).

Huse, S.M., Huber, J.A., Morrison, H.G., Sogin, M.L. & Mark Welch, D. Genome Biol. 8, 9 (2007).

Edgar, R.C. Nucleic Acids Res. 32, 1792–1797 (2004).

Altschul, S.F. et al. Nucleic Acids Res. 25, 3389–3402 (1997).