Abiotic stress and self-destruction: ZmATG8 and ZmATG12 gene transcription and osmotic stress responses in maize

Avin-Wittenberg, 2019, Autophagy and its role in plant abiotic stress management, Plant Cell & Environment, 42, 1045, 10.1111/pce.13404 Bailey, 1994, Fitting a mixture model by expectation maximization to discover motifs in biopolymers, Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 2, 28 Bassham, 2018, Spheres of autophagy in maize, Nature Plants, 4, 985, 10.1038/s41477-018-0313-8 Bustin, 2009, The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments, Clinical Chemistry, 55, 611, 10.1373/clinchem.2008.112797 Chung, 2009, The ATG Autophagic Conjugation System in Maize: ATG Transcripts and Abundance of the ATG8-Lipid Adduct Are Regulated by Development and Nutrient Availability, Plant Physiology, 149, 220, 10.1104/pp.108.126714 Cruz de Carvalho, 2008, Drought stress and reactive oxygen species. Production, scavenging and signaling, Plant Signal Behavior, 3, 156, 10.4161/psb.3.3.5536 Demsar, 2013, Orange: Data mining toolbox in Python, Journal of Machine Learning Research, 14, 2349 Fei, 2019, Patterns of Drought Response of 38 WRKY Transcription Factors of Zanthoxylum bungeanum Maxim, International Journal of Molecular Sciences, 20, 68, 10.3390/ijms20010068 Han, 2011, Role of plant autophagy in stress response, Protein & Cell, 2, 784, 10.1007/s13238-011-1104-4 Higo, 1999, Plant cis-acting regulatory DNA elements (PLACE) database: 1999, Nucleic Acids Research, 27, 297, 10.1093/nar/27.1.297 Kuzuoglu-Ozturk, 2012, Autophagy-related gene, TdAtg8, in wild emmer wheat plays a role in drought and osmotic stress response, Planta, 236, 1081, 10.1007/s00425-012-1657-3 Li, 2015, Autophagic recycling plays a central role in maize nitrogen remobilization, The Plant Cell, 27, 1389, 10.1105/tpc.15.00158 Liu, 2009, Autophagy is required for tolerance of drought and salt stress in plants, Autophagy, 5, 954, 10.4161/auto.5.7.9290 Livak, 2001, Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta C(T)) Method, Methods, 25, 402, 10.1006/meth.2001.1262 Marshall, 2018, Autophagy: The master of bulk and selective recycling, Annual Review of Plant Biology, 69, 22.1, 10.1146/annurev-arplant-042817-040606 McAdam, 2016, Uprooting an abscisic acid paradigm: Shoots are the primary source, Plant Signaling & Behavior, 11, e1169359, 10.1080/15592324.2016.1169359 Nakashima, 2014, The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat, Frontiers in Plant Science, 5, 170, 10.3389/fpls.2014.00170 Saeed, 2003, TM4: A free, open-source system for microarray data management and analysis, BioTechniques, 34, 374, 10.2144/03342mt01 Signorelli, 2019, Linking autophagy to Abiotic and biotic stress responses, Trends in Plant Science, 24, 413, 10.1016/j.tplants.2019.02.001 Singh, 2015, Transcriptional regulation of drought response: A tortuous network of transcriptional factors, Frontiers in Plant Science, 6, 895, 10.3389/fpls.2015.00895 Su, 2019, Evaluating maize phenotype dynamics under drought stress using terrestrial lidar, Plant Methods, 15, 11, 10.1186/s13007-019-0396-x Sun, 2018, Improvement of drought tolerance by overexpressing MdATG18a is mediated by modified antioxidant system and activated autophagy in transgenic apple, Plant Biotechnology Journal, 16, 545, 10.1111/pbi.12794 Tang, 2018, Autophagy in crop plants: what’s new beyond Arabidopsis?, Open Biology, 8, 180162, 10.1098/rsob.180162 Üstün, 2017, Autophagy as a mediator of life and death in plants, Current Opinion in Plant Biology, 40, 122, 10.1016/j.pbi.2017.08.011 Wang, 2017, Apple autophagy-related protein MdATG3s afford tolerance to multiple abiotic stresses, Plant Science, 256, 53, 10.1016/j.plantsci.2016.12.003 Wang, 2017, Autophagy: An important biological process that protects plants from stressful environments, Frontiers in Plant Science, 7, 2030, 10.3389/fpls.2016.02030 Williams, 2015, Trehalose Accumulation Triggers Autophagy during Plant Desiccation, PLoS Genetics, 11, e1005705, 10.1371/journal.pgen.1005705 Wittkopp, 2012, Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence, Nature Reviews Genetics, 13, 59, 10.1038/nrg3095 Yang, 2013, Interaction of aluminium and drought stress on root growth and crop yield on acid soils, Plant and Soil, 372, 3, 10.1007/s11104-012-1580-1 Yang, 2019, Multiple regulatory levels shape autophagy activity in plants, Frontiers in Plant Science, 10, 532, 10.3389/fpls.2019.00532 Zhang, 2017, Genome-wide identification of gene expression in contrasting maize inbred lines under field drought conditions reveals the significance of transcription factors in drought tolerance, PLoS One, 12, e0179477, 10.1371/journal.pone.0179477 Zhang, 2018, Effects of drought stress and water recovery on physiological responses and gene expression in maize seedlings, BMC Plant Biology, 18, 68, 10.1186/s12870-018-1281-x Zhou, 2013, Correction: NBR1-mediated selective autophagy targets insoluble ubiquitinated protein aggregates in plant stress responses, PLoS Genetics, 9, e1004477, 10.1371/journal.pgen.1003196 Zhu, 2018, Mitochondrial alternative oxidase-dependent autophagy involved in ethylene-mediated drought tolerance in Solanum lycopersicum, Plant Biotechnology Journal, 16, 2063, 10.1111/pbi.12939