A universal classification of eukaryotic transposable elements implemented in Repbase

Nature Reviews Genetics - Tập 9 Số 5 - Trang 411-412 - 2008
Thomas Wicker1, François Sabot2, Aurélie Hua-Van3, Jeffrey L. Bennetzen4, Pierre Capy3, Boulos Chalhoub5, Andrew J. Flavell6, Philippe Leroy7, Michele Morgante8, Olivier Panaud9, Etienne Paux7, Phillip SanMiguel10, Alan H. Schulman11
1Institute of Plant Biology,
2Viikki Biocenter, Institute of Biotechnology, MTT/BI Plant Genomics Laboratory
3Laboratoire Evolution, Génomes et Spéciation
4Department of Genetics
5Unité de recherche en génomique végétale
6SCRI, Plant Research Unit
7Génétique Diversité et Ecophysiologie des Céréales
8Dipartimento di Scienze Agrarie ed Ambientali
9Laboratoire Génome et développement des plantes
10Genomics Core Facility
11Agrifood Research Finland

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Wicker, T. et al. A unified classification system for eukaryotic transposable elements. Nature Rev. Genet. 8, 973–982 (2007).

Jurka, J. et al. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110, 462–467 (2005).

Jurka, J., Walichiewicz, J. & Milosavljevic, A. Prototypic sequences for human repetitive DNA. J. Mol. Evol. 35, 286–291 (1992).

Jurka, J. Repbase Update: a database and an electronic journal of repetitive elements. Trends Genet. 16, 418–420 (2000).

Kapitonov, V. V. & Jurka, J. Rolling-circle transposons in eukaryotes. Proc. Natl Acad. Sci. USA 98, 8714–8719 (2001).

Kapitonov, V. V. & Jurka, J. Molecular paleontology of transposable elements in the Drosophila melanogaster genome. Proc. Natl Acad. Sci. USA 100, 6569–6574 (2003).

Kapitonov, V. V. & Jurka, J. A novel class of SINE elements derived from 5S rRNA. Mol. Biol. Evol. 20, 694–702 (2003).

Kapitonov, V. V. & Jurka, J. The esterase and PHD domains in CR1-like non-LTR retrotransposons. Mol. Biol. Evol. 20, 38–46 (2003).

Kapitonov, V. V. & Jurka, J. Harbinger transposons and an ancient HARBI1 gene derived from a transposase. DNA Cell Biol. 23, 311–324 (2004).

Kapitonov, V. V. & Jurka, J. RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons. PLoS Biol. 3, e181 (2005).

Kapitonov, V. V. & Jurka, J. Self-synthesizing DNA transposons in eukaryotes. Proc. Natl Acad. Sci. USA 103, 4540–4545 (2006).

Kapitonov, V. V. & Jurka, J. Helitrons on a roll: eukaryotic rolling-circle transposons. Trends Genet. 23, 521–529 (2007).

Kapitonov, V. V., Pavlicek, A. & Jurka, J. in Encyclopedia of Molecular Cell Biology and Molecular Medicine (ed. Meyers, R. A.) 251–305 (Wiley-VCH, Weinheim, 2004).

Jurka, J. & Kapitonov, V. V. PIFs meet Tourists and Harbingers: a superfamily reunion. Proc. Natl Acad. Sci. USA 98, 12315–12316 (2001).

Jurka, J., Kapitonov, V. V., Kohany, O. & Jurka, M. V. Repetitive sequences in complex genomes: structure and evolution. Annu. Rev. Genomics Hum. Genet. 8, 241–259 (2007).

Smit, A. F. & Riggs, A. D. Tiggers and other DNA transposon fossils in the human genome. Proc. Natl Acad. Sci. USA 93, 1443–1448 (1996).

Armbrust, E. V. et al. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 306, 79–86 (2004).

Merchant, S. S. et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318, 245–250 (2007).

Galagan, J. E. et al. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature 438, 1105–1115 (2005).

Putnam, N. H. et al. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317, 86–94 (2007).

Mikkelsen, T. S. et al. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature 447, 167–177 (2007).