A solid phase plate assay for HIV-1 genotyping

Molecular and Cellular Probes - Tập 14 - Trang 137-147 - 2000
LI González-Villaseñor1, K Wu1, L Yang1
1BBI-Biotech Research Laboratories, Gaithersburg, MD 20877, USA

Tài liệu tham khảo

Ho, 1995, Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection, Nature, 373, 123, 10.1038/373123a0 Gao, 1996, Molecular cloning and analysis of functional envelope genes from human immunodeficiency virus type 1 sequence subtypes A through G. The WHO and NIAID Networks for HIV Isolation and Characterization, Journal of Virology, 70, 1651, 10.1128/JVI.70.3.1651-1667.1996 Preston, 1988, Fidelity of HIV-1 reverse transcriptase, Science, 242, 1168, 10.1126/science.2460924 Roberts, 1988, The accuracy of reverse transcriptase from HIV-1, Science, 242, 1171, 10.1126/science.2460925 Wolfs, 1991, Naturally occurring mutations within HIV-1 V3 genomic RNA lead to antigenic variation dependent on a single amino acid substitution, Virology, 185, 195, 10.1016/0042-6822(91)90767-6 Kusumi, 1992, Human immunodeficiency virus type 1 envelope gene structure and diversity in vivo and after cocultivationinvitro, Journal of Virology, 66, 875, 10.1128/JVI.66.2.875-885.1992 Buonaguro, 1995, Heteroduplex mobility assay and phylogenetic analysis of V3 region sequences of human immunodeficiency virus type 1 isolates from Gulu, northern Uganda. The Italian-Ugandan Cooperation AIDS Program, Journal of Virology, 69, 7971, 10.1128/JVI.69.12.7971-7981.1995 Korber, 1997, Human Retroviruses and AIDS: A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences. Pp. I18–I90. Los Alamos, NM: Los Alamos National Laboratory. Shpaer, 1993, Rates of amino acid change in the envelope protein correlate with pathogenicity of primate lentiviruses, Journal of Molecular Evolution, 37, 57, 10.1007/BF00170462 Kliks, 1993, V3 variability can influence the ability of an antibody to neutralize or enhance infection by diverse strains of human immunodeficiency virus type 1, Proceedings of the National Academy of Science, USA, 90, 11518, 10.1073/pnas.90.24.11518 Gao, 1999, Origin of HIV-1 in Pan troglodytes troglodytes, Nature, 397, 436, 10.1038/17130 Sharp, 1994, Origins and diversity of human immunoÍdeficiency viruses, AIDS, 8, S27 Sharp, 1999, Origins and evolution of AIDS viruses, Biology Bulletin, 196, 338, 10.2307/1542965 Gurtler, 1996, HIV1 subtype O: epidemiology, pathogenesis, diagnosis, and perspectives of the evolution of HIV, Archives of Virology Suppl., 11, 195 Simon, 1998, Identification of a new human immunodeficiency virus type 1 distinct from group M and group O, Nature and Medicine, 4, 1032, 10.1038/2017 McCutchan, 1991, Genetic comparison of human immunodeficiency virus (HIV-1) isolates by polymerase chain reaction, Journal of Acquired Immune Deficiency Syndrome, 4, 1241 Oram, 1990, Nucleotide sequence of a Ugandan HIV-1 provirus reveals genetic diversity from other HIV-1 isolates, AIDS Research into Human Retroviruses, 6, 1073, 10.1089/aid.1990.6.1073 Carr, 1996, Full-length sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand, Journal of Virology, 70, 5935, 10.1128/JVI.70.9.5935-5943.1996 Lukashov, 1995, Simultaneous introduction of distinct HIV-1 subtypes into different risk groups in Russia, Byelorussia and Lithuania, AIDS, 9, 435, 10.1097/00002030-199509050-00004 Pfutzner, 1992, HIV-1 and HIV-2 infections in a high-risk population in Bombay, India: evidence for the spread of HIV-2 and presence of a divergent HIV-1 subtype, Journal of Acquired Immune Deficiency Syndrome, 5, 972 Louwagie, 1994, Genetic analysis of HIV-1 isolates from Brazil reveals presence of two distinct genetic subtypes, AIDS Research into Human Retroviruses, 10, 561, 10.1089/aid.1994.10.561 Luo, 1995, HIV-1 subtype C in China, Lancet, 345, 1051, 10.1016/S0140-6736(95)90792-0 Montano, 1997, Divergent transcriptional regulation among expanding human immunodeficiency virus type 1 subtypes, Journal of Virology, 71, 8657, 10.1128/JVI.71.11.8657-8665.1997 Gao, 1994, HIV-1 sequence subtype D in the United States, AIDS Research into Human Retroviruses, 10, 625, 10.1089/aid.1994.10.625 Brodine, 1995, Detection of diverse HIV-1 genetic subtypes in the USA, Lancet, 346, 1198, 10.1016/S0140-6736(95)92901-0 Robertson, 1995, Recombination in HIV-1, Nature, 374, 124, 10.1038/374124b0 Zhu, 1995, Evidence for coinfection by multiple strains of human immunodeficiency virus type 1 subtype B in an acute seroconvertor, Journal of Virology, 69, 1324, 10.1128/JVI.69.2.1324-1327.1995 Carr, 1998 Moore, 1996, Inter- and intraclade neutralization of human immunodeficiency virus type 1: genetic clades do not correspond to neutralization serotypes but partially correspond to gp120 antigenic serotypes, Journal of Virology, 70, 427, 10.1128/JVI.70.1.427-444.1996 Kostrikis, 1996, Journal of Virology, 70, 445, 10.1128/JVI.70.1.445-458.1996 Hu, 1996, The emerging genetic diversity of HIV. The importance of global surveillance for diagnostics, research, and prevention, Journal of the American Medical Association, 275, 210, 10.1001/jama.1996.03530270050031 Cornelissen, 1997, pol gene diversity of five human immunodeficiency virus type 1 subtypes: evidence for naturally occurring mutations that contribute to drug resistance, limited recombination patterns, and common ancestry for subtypes B and D, Journal of Virology, 71, 6348, 10.1128/JVI.71.9.6348-6358.1997 Apetrei, 1998, Human immunoÍdeficiency virus type 1 subtype F reverse transcriptase sequence and drug susceptibility, Journal of Virology, 72, 3534, 10.1128/JVI.72.5.3534-3538.1998 Siegrist, 1994, Mother to child transmission of zidovudine-resistant HIV-1, Lancet, 344, 1771, 10.1016/S0140-6736(94)92911-4 Loveday, 1995, HIV-1 RNA serum-load and resistant viral genotypes during early zidovudine therapy, Lancet, 345, 820, 10.1016/S0140-6736(95)92963-0 Hu, 1998, Global and molecular epidemiology of HIV. In AIDS and other manifestations of HIV infection (Wormser, G. Ped.) Pp. 27–40. Philadelphia: Lipponcott-Raven Publishers. Bachmann, 1994, Rapid genetic characterization of HIV type 1 strains from four World Health Organization-sponsored vaccine evaluation sites using a heteroduplex mobility assay. WHO Network for HIV Isolation and Characterization, AIDS Research into Human Retroviruses, 10, 1345, 10.1089/aid.1994.10.1345 Ganguly, 1993, Conformation-sensitive gel electrophoresis for rapid detection of single-base differences in double-stranded PCR products and DNA fragments: evidence for solvent-induced bends in DNA heteroduplexes, Proceedings of the National Academy of Science, USA, 90, 10325, 10.1073/pnas.90.21.10325 USDHHS-PHS-NIH-NIAID, 1998, Genetic subtyping and PCR reagents. In AIDS Research and Reference Reagent Program Catalog. p. 141. NIH Publication Number 98-1536. Delwart, 1998, Heteroduplex Mobility Analysis HIV-1 env Subtyping Kit Protocol, version 3. NIH AIDS Research and Reference Reagent Program. Rasmussen, 1991, Covalent immobilization of DNA onto polystyrene microwells: the molecules are only bound at the 5′ end, Analytical Biochemistry, 198, 138, 10.1016/0003-2697(91)90518-X Chevrier, 1993, PCR product quantification by non-radioactive hybridization procedures using an oligonucleotide covalently bound to microwells, Molecular and Cellular Probes, 7, 187, 10.1006/mcpr.1993.1028 Rasmussen, 1994, Combined polymerase chain reaction-hybridization microplate assay used to detect bovine leukemia virus andSalmonella, Clinical Chemistry, 40, 200, 10.1093/clinchem/40.2.200 Leitner, 1997