A soil microscale study to reveal the heterogeneity of Hg(II) impact on indigenous bacteria by quantification of adapted phenotypes and analysis of community DNA fingerprints

FEMS Microbiology Ecology - Tập 31 Số 2 - Trang 107-115 - 2000
Lionel Ranjard1, Sylvie Nazaret1,2, François Gourbière1,2, Jean Thioulouse3, Philippe Linet1, Agnès Richaume1
1Laboratoire d'Ecologie Microbienne - UMR 5557
2Laboratoire de Biométrie et Biologie Evolutive - UMR 5558
3Ecologie quantitative et évolutive des communautés

Tóm tắt

Từ khóa


Tài liệu tham khảo

Giller, 1998, Toxicity of heavy metals to microorganisms and microbial processes in agricultural soils: a review, Soil Biol. Biochem., 30, 1389, 10.1016/S0038-0717(97)00270-8

Bååth, 1998, Microbial community-based measurements to estimate heavy metal effects in soil, Ambio., 27, 58

Smit, 1997, Detection of shifts in microbial community structure and diversity in soil caused by copper contamination using amplified ribosomal DNA restriction analysis, FEMS Microbiol. Ecol., 23, 249, 10.1111/j.1574-6941.1997.tb00407.x

Bååth, 1998, Effect of metal-rich sludge amendments on the soil microbial community, Appl. Environ. Microbiol., 64, 238, 10.1128/AEM.64.1.238-245.1998

Barkay, 1992, Mercury biotransformations and their potential for bioremediation of mercury contamination, Biodegradation, 3, 147, 10.1007/BF00129080

Doelman, 1994, Effects of heavy metals in soil microbial diversity and activity as shown by the sensitivity-resistance index an ecologically relevant parameter, Biol. Fertil. Soils., 17, 177, 10.1007/BF00336319

Doelman, 1984, Short-term and long-term effects of cadmium, chromium, copper, nickel, lead and zinc on soil microbial respiration in relation to abiotic soil factors, Plant Soil, 79, 317, 10.1007/BF02184325

Zelles, 1986, Comparison of methods to test chemicals for side effects on soil microorganisms, Ecotoxicol. Environ. Saf., 12, 53, 10.1016/0147-6513(86)90006-0

Chandler, 1991, Effects of heavy metals from past applications of sewage sludge on microbial biomass and organic matter accumulation in a sandy loam and a silty loam UK soil, Soil Biol. Biochem., 23, 927, 10.1016/0038-0717(91)90172-G

Ranjard, 1997, Response of soil bacteria to Hg(II) in relation to soil characteristics and cell location, FEMS Microbiol. Ecol., 24, 321, 10.1111/j.1574-6941.1997.tb00449.x

Babich, 1980, Environmental factors that influence the toxicity of heavy metal and gaseous pollutants to microorganisms, CRC Crit. Rev. Microbiol., 8, 99, 10.3109/10408418009081123

Kilbertus, 1980, Etude des microhabitats contenus dans les aggrégats du sol, leur relation avec la biomasse bactérienne et la taille des procaryotes présents, Rev. Ecol. Biol. Sols, 17, 543

Foster, 1988, Microenvironments of soil microorganisms, Biol. Fertil. Soils, 6, 189, 10.1007/BF00260816

Hattori, 1988, Soil aggregates as microhabitats of microorganisms, Rep. Inst. Agric. Res. Tohoku Univ., 37, 23

Jocteur Monrozier, 1991, Components and microbial biomass content of size fractions in soils of contrasting aggregation, Geoderma, 49, 37, 10.1016/0016-7061(91)90025-O

Christensen, 1992, Physical fractionation of soil and organic matter in primary particle size and density separates, Adv. Soil Sci., 20, 1, 10.1007/978-1-4612-2930-8_1

Rutherford, 1992, Influence of texture on habitable pore space and bacteria-protozoan populations in soil, Biol. Fertil. Soils, 12, 221, 10.1007/BF00336036

Kanazawa, 1986, Distribution of microorganisms, total biomass and enzyme activities in different particles of brown soil, Microb. Ecol., 12, 205, 10.1007/BF02011205

Lensi, 1995, Denitrifiers and denitrifying activity in size fractions of a mollisol under permanent pasture and continuous cultivation, Soil Biol. Biochem., 27, 61, 10.1016/0038-0717(94)00132-K

Gestel, 1996, Spatial distribution of microbial biomass in microaggregates of a silty-loam soil and the relation with the resistance of microorganisms to soil drying, Soil Biol. Biochem., 28, 503, 10.1016/0038-0717(95)00192-1

Martins, 1997, Microbial response to repeated applications of low concentrations of pentachlorophenol in an alfisol under pasture, Chemosphere, 35, 1637, 10.1016/S0045-6535(97)00245-2

Kabir, 1994, Distribution of soil fractions and location of soil bacteria in a vertisol under cultivation and perennial grass, Plant Soil, 163, 243, 10.1007/BF00007974

Ranjard, 1998, A single procedure to recover DNA from the surface or inside aggregates and in various size fractions of soil suitable for PCR-based assays of bacterial communities, Eur. J. Soil Biol., 34, 89, 10.1016/S1164-5563(99)90006-7

Thioulouse, 1997, ADE-4: a multivariate analysis and graphical display software, Stat. Comput., 7, 75, 10.1023/A:1018513530268

Nelson, 1975, The ecology of mercury-resistant bacteria in Chesapeake bay, Microb. Ecol., 1, 191, 10.1007/BF02512389

Rochelle, 1991, Distribution of DNA sequences encoding narrow- and broad-spectrum mercury resistance, Appl. Environ. Microbiol., 57, 1581, 10.1128/AEM.57.6.1581-1589.1991

Baldi, 1995, Mercury, arsenic and boron resistant bacteria isolated from the phyllosphere as positive bioindicators of airborne pollution near geothermal plants, Sci. Total Environ., 164, 99, 10.1016/0048-9697(95)04426-2

Borneman, 1997, Molecular microbial diversity in soils from Eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation, Appl. Environ. Microbiol., 63, 2647, 10.1128/AEM.63.7.2647-2653.1997

Kelly, 1984, Mercury resistance among soil bacteria: ecology and transferability of genes encoding resistance, Soil Biol. Biochem., 16, 1, 10.1016/0038-0717(84)90116-0

Barkay, 1986, Phenotypic and genotypic adaptation of aerobic heterotrophic sediment bacterial communities to mercury stress, Appl. Environ. Microbiol., 52, 403, 10.1128/AEM.52.2.403-406.1986

Osborn, 1993, Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from Gram-negative soil bacteria indistinguishable by DNA-DNA hybridization, Appl. Environ. Microbiol., 59, 4024, 10.1128/AEM.59.12.4024-4030.1993

Frostegård, 1996, Changes in microbial community structure during long-term incubation in two soils experimentally contaminated with metals, Soil Biol. Biochem., 28, 213

Engelen, 1998, Monitoring impact of a pesticide treatment on bacterial soil communities by metabolic and genetic fingerprinting in addition to conventional testing procedures, Appl. Environ. Microbiol., 64, 2814, 10.1128/AEM.64.8.2814-2821.1998

Roane, 1996, Characterization of bacterial communities in heavy metal contaminated soils, Can. J. Microbiol., 42, 593, 10.1139/m96-080

White, 1994, A partial chloroform-fumigation technique to characterise the spatial location of bacteria introduced into soil, Biol. Fertil. Soils, 17, 191, 10.1007/BF00336321

Hattori, 1976, The physical environment in soil microbiology: an attempt to extend principles of microbiology to soil microorganisms, CRC Crit. Rev. Microbiol., 4, 423, 10.3109/10408417609102305

ØVreas, 1998, Microbial diversity and community structure in two different agricultural soil communities, Appl. Environ. Microbiol., 36, 303

Beelen, 1991, The toxic effects of pollutants on the mineralization of acetate in subsoil microcosms, Environ. Toxicol. Chem., 10, 775, 10.1002/etc.5620100609

Duxburry, 1983, Metal-tolerant bacterial populations from natural and metal-polluted soils, Soil Biol. Biochem., 15, 243, 10.1016/0038-0717(83)90066-4