A quantitative study of the diversity of stripe-forming processes in an arthropod cell-based field undergoing axis formation and growth
Tài liệu tham khảo
Akiyama-Oda, 2003, Early patterning of the spider embryo: a cluster of mesenchymal cells at the cumulus produces Dpp signals received by germ disc epithelial cells, Development, 130, 1735, 10.1242/dev.00390
Akiyama-Oda, 2006, Axis specification in the spider embryo: dpp is required for radial-to-axial symmetry transformation and sog for ventral patterning, Development, 133, 2347, 10.1242/dev.02400
Akiyama-Oda, 2010, Cell migration that orients the dorsoventral axis is coordinated with anteroposterior patterning mediated by Hedgehog signaling in the early spider embryo, Development, 137, 1263, 10.1242/dev.045625
Akiyama-Oda, 2016, Multi-color FISH facilitates analysis of cell-type diversification and developmental gene regulation in the Parasteatoda spider embryo, Dev. Growth Differ., 58, 215, 10.1111/dgd.12263
Auman, 2017, Dynamics of growth zone patterning in the milkweed bug Oncopeltus fasciatus, Development, 144, 1896, 10.1242/dev.142091
Benton, 2013, Cell and tissue dynamics during Tribolium embryogenesis revealed by versatile fluorescence labeling approaches, Development, 140, 3210, 10.1242/dev.096271
Brena, 2013, An analysis of segmentation dynamics throughout embryogenesis in the centipede Strigamia maritima, BMC Biol., 11, 112, 10.1186/1741-7007-11-112
Cepeda, 2017, Contribution of cell proliferation to axial elongation in the red flour beetle Tribolium castaneum, PLoS One, 12, e0186159, 10.1371/journal.pone.0186159
Chipman, 2008, The segmentation cascade in the centipede Strigamia maritima: involvement of the Notch pathway and pair-rule gene homologues, Dev. Biol., 319, 160, 10.1016/j.ydbio.2008.02.038
Choe, 2006, A pair-rule gene circuit defines segments sequentially in the short-germ insect Tribolium castaneum, Proc. Natl. Acad. Sci. USA, 103, 6560, 10.1073/pnas.0510440103
Clark, 2016, Odd-paired controls frequency doubling in Drosophila segmentation by altering the pair-rule gene regulatory network, Elife, 5
Crampin, 1999, Reaction and diffusion on growing domains: scenarios for robust pattern formation, Bull. Math. Biol., 61, 1093, 10.1006/bulm.1999.0131
Crombach, 2016, Gap gene regulatory dynamics evolve along a genotype network, Mol. Biol. Evol., 33, 1293, 10.1093/molbev/msw013
Damen, 2002, Parasegmental organization of the spider embryo implies that the parasegment is an evolutionary conserved entity in arthropod embryogenesis, Development, 129, 1239, 10.1242/dev.129.5.1239
Damen, 2007, Evolutionary conservation and divergence of the segmentation process in arthropods, Dev. Dyn., 236, 1379, 10.1002/dvdy.21157
Damen, 2000, Expression patterns of hairy, even-skipped, and runt in the spider Cupiennius salei imply that these genes were segmentation genes in a basal arthropod, Proc. Natl. Acad. Sci. USA, 97, 4515, 10.1073/pnas.97.9.4515
Davis, 1991, Apical localization of pair-rule transcripts requires 3′ sequences and limits protein diffusion in the Drosophila blastoderm embryo, Cell, 67, 927, 10.1016/0092-8674(91)90366-7
Dessaud, 2008, Pattern formation in the vertebrate neural tube: a sonic hedgehog morphogen-regulated transcriptional network, Development, 135, 2489, 10.1242/dev.009324
Duboule, 1994, Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony, Dev. Suppl., 135
Edgar, 1987, Cytoarchitecture and the patterning of fushi tarazu expression in the Drosophila blastoderm, Genes Dev., 1, 1226, 10.1101/gad.1.10.1226
El-Sherif, 2012, A segmentation clock operating in blastoderm and germband stages of Tribolium development, Development, 139, 4341, 10.1242/dev.085126
Farzana, 2008, Hedgehog signaling pathway function conserved in Tribolium segmentation, Dev. Genes Evol., 218, 181, 10.1007/s00427-008-0207-2
Forster, 2004, Complex wavelets for extended depth-of-field: a new method for the fusion of multichannel microscopy images, Microsc. Res. Tech., 65, 33, 10.1002/jemt.20092
Fujimoto, 2008, Network evolution of body plans, PLoS One, 3, e2772, 10.1371/journal.pone.0002772
Galis, 2002, Conservation of the segmented germband stage: robustness or pleiotropy?, Trends Genet., 18, 504, 10.1016/S0168-9525(02)02739-7
Gallitano-Mendel, 1997, Novel segment polarity gene interactions during embryonic head development in Drosophila, Dev. Biol., 192, 599, 10.1006/dbio.1997.8753
Gierer, 1972, A theory of biological pattern formation, Kybernetik, 12, 30, 10.1007/BF00289234
Grimm, 2010, Modelling the Bicoid gradient, Development, 137, 2253, 10.1242/dev.032409
Hannibal, 2013, What is a segment?, Evodevo, 4, 35, 10.1186/2041-9139-4-35
Hartenstein, 1985, Fate mapping in wild-type Drosophila melanogaster. I. The spatio-temporal pattern of embryonic cell divisions. Roux's Arch, Dev. Biol., 194, 181
Hatini, 2001, Divide and conquer: pattern formation in Drosophila embryonic epidermis, Trends Genet., 17, 574, 10.1016/S0168-9525(01)02448-9
Hilbrant, 2012, Evolutionary crossroads in developmental biology: the spider Parasteatoda tepidariorum, Development, 139, 2655, 10.1242/dev.078204
Ho, 1997, Cellularization in locust embryos occurs before blastoderm formation, Development, 124, 2761, 10.1242/dev.124.14.2761
Hogenesch, 2011, Understanding systems-level properties: timely stories from the study of clocks, Nat. Rev. Genet., 12, 407, 10.1038/nrg2972
Holm, 1952, Experimentelle Untersuchungen über die Entwicklung und Entwicklungsphysiologie des Spinnenembryos, Zool. BiDr. Upps., 29, 293
Hubaud, 2014, Signalling dynamics in vertebrate segmentation, Nat. Rev. Mol. Cell Biol., 15, 709, 10.1038/nrm3891
Hughes, 2002, Exploring myriapod segmentation: the expression patterns of even-skipped, engrailed, and wingless in a centipede, Dev. Biol., 247, 47, 10.1006/dbio.2002.0683
Hunnekuhl, 2017, Formation and subdivision of the head field in the centipede Strigamia maritima, as revealed by the expression of head gap gene orthologues and hedgehog dynamics, Evodevo, 8, 18, 10.1186/s13227-017-0082-x
Irvine, 1994, Cell intercalation during Drosophila germband extension and its regulation by pair-rule segmentation genes, Development, 120, 827, 10.1242/dev.120.4.827
Janssen, 2012, Segment polarity gene expression in a myriapod reveals conserved and diverged aspects of early head patterning in arthropods, Dev. Genes Evol., 222, 299, 10.1007/s00427-012-0413-9
Jaynes, 2004, Drawing lines in the sand: even skipped et al. and parasegment boundaries, Dev. Biol., 269, 609, 10.1016/j.ydbio.2004.03.001
Jäckle, 1986, Cross-regulatory interactions among the gap genes of Drosophila, Nature, 324, 668, 10.1038/324668a0
Jiménez, 2015, Dynamics of gene circuits shapes evolvability, Proc. Natl. Acad. Sci. USA, 112, 2103, 10.1073/pnas.1411065112
Kageyama, 2012, Oscillatory gene expression and somitogenesis, Wiley Interdiscip. Rev. Dev. Biol., 1, 629, 10.1002/wdev.46
Kanayama, 2011, Travelling and splitting of a wave of hedgehog expression involved in spider-head segmentation, Nat. Commun., 2, 500, 10.1038/ncomms1510
Kanayama, 2010, Early embryonic development in the spider Achaearanea tepidariorum: microinjection verifies that cellularization is complete before the blastoderm stage, Arthropod Struct. Dev., 39, 436, 10.1016/j.asd.2010.05.009
Kicheva, 2015, Developmental pattern formation in phases, Trends Cell Biol., 25, 579, 10.1016/j.tcb.2015.07.006
Knipple, 1985, Spatial and temporal patterns of Krüppel gene expression in early Drosophila embryos, Nature, 317, 40, 10.1038/317040a0
Kondo, 1995, A reaction-diffusion wave on the skin of the marine angelfish Pomacanthus, Nature, 376, 765, 10.1038/376765a0
Lee, 1992, Secretion and localized transcription suggest a role in positional signaling for products of the segmentation gene hedgehog, Cell, 71, 33, 10.1016/0092-8674(92)90264-D
Lewis, 2003, Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator, Curr. Biol., 13, 1398, 10.1016/S0960-9822(03)00534-7
Liu, 2005, Short and long germ segmentation: unanswered questions in the evolution of a developmental mode, Evol. Dev., 7, 629, 10.1111/j.1525-142X.2005.05066.x
Lynch, 2006, Localized maternal orthodenticle patterns anterior and posterior in the long germ wasp Nasonia, Nature, 439, 728, 10.1038/nature04445
Lynch, 2012, Comparisons of the embryonic development of Drosophila, Nasonia, and Tribolium, Wiley Interdiscip. Rev. Dev. Biol., 1, 16, 10.1002/wdev.3
Mahowald, 1963, Electron microscopy of the formation of the cellular blastoderm in Drosophila melanogaster, Exp. Cell Res., 32, 457, 10.1016/0014-4827(63)90186-1
Maini, 2012, Turing's model for biological pattern formation and the robustness problem, Interface Focus, 2, 487, 10.1098/rsfs.2011.0113
Martinez-Arias, 1993, Development and patterning of the larval epidermis of Drosophila, 517
Masamizu, 2006, Real-time imaging of the somite segmentation clock: revelation of unstable oscillators in the individual presomitic mesoderm cells, Proc. Natl. Acad. Sci. USA, 103, 1313, 10.1073/pnas.0508658103
McGregor, 2008, Wnt8 is required for growth-zone establishment and development of opisthosomal segments in a spider, Curr. Biol., 18, 1619, 10.1016/j.cub.2008.08.045
Meinhardt, 1982
Meinhardt, 1987, A model for pattern formation on the shells of molluscs, J. Theor. Biol., 126, 63, 10.1016/S0022-5193(87)80101-7
Monk, 2003, Oscillatory expression of Hes1, p53, and NF-kappab driven by transcriptional time delays, Curr. Biol., 13, 1409, 10.1016/S0960-9822(03)00494-9
Murray, 2002
Nagy, 1994, Conservation of wingless patterning functions in the short-germ embryos of Tribolium castaneum, Nature, 367, 460, 10.1038/367460a0
Nakamura, 2010, Imaging of transgenic cricket embryos reveals cell movements consistent with a syncytial patterning mechanism, Curr. Biol., 20, 1641, 10.1016/j.cub.2010.07.044
Novák, 2008, Design principles of biochemical oscillators, Nat. Rev. Mol. Cell Biol., 9, 981, 10.1038/nrm2530
Oda, 2008, Differing strategies for forming the arthropod body plan: lessons from Dpp, Sog and Delta in the fly Drosophila and spider Achaearanea, Dev. Growth Differ., 50, 203, 10.1111/j.1440-169X.2008.00998.x
Oda, 2018, Data for: a quantitative study of the diversity of stripe-forming processes in an arthropod cell-based field undergoing axis formation and growth, Mendeley. Data., v1
Oda, 2007, Progressive activation of Delta-Notch signaling from around the blastopore is required to set up a functional caudal lobe in the spider Achaearanea tepidariorum, Development, 134, 2195, 10.1242/dev.004598
Patel, 1989, Expression of engrailed during segmentation in grasshopper and crayfish, Development, 107, 201, 10.1242/dev.107.2.201
Patel, 1989, Expression of engrailed proteins in arthropods, annelids, and chordates, Cell, 58, 955, 10.1016/0092-8674(89)90947-1
Pearson, 1993, Complex patterns in a simple system, Science, 261, 189, 10.1126/science.261.5118.189
Pechmann, 2009, Dynamic gene expression is required for anterior regionalization in a spider, Proc. Natl. Acad. Sci. USA, 106, 1468, 10.1073/pnas.0811150106
Pechmann, 2009, Dynamic gene expression is required for anterior regionalization in a spider, Proc. Natl. Acad. Sci. USA, 106, 1468, 10.1073/pnas.0811150106
Peel, 2005, Arthropod segmentation: beyond the Drosophila paradigm, Nat. Rev. Genet., 6, 905, 10.1038/nrg1724
Posnien, 2010, Genetics, development and composition of the insect head--a beetle's view, Arthropod Struct. Dev., 39, 399, 10.1016/j.asd.2010.08.002
Pourquié, 2011, Vertebrate segmentation: from cyclic gene networks to scoliosis, Cell, 145, 650, 10.1016/j.cell.2011.05.011
Pueyo, 2008, Ancestral Notch-mediated segmentation revealed in the cockroach Periplaneta americana, Proc. Natl. Acad. Sci. USA, 105, 16614, 10.1073/pnas.0804093105
Raff, 1996
Rosenberg, 2014, Dual mode of embryonic development is highlighted by expression and function of Nasonia pair-rule genes, Elife, 3, e01440, 10.7554/eLife.01440
Rothschild, 2016, Predicting ancestral segmentation phenotypes from Drosophila to Anopheles using in silico evolution, PLoS Genet., 12, e1006052, 10.1371/journal.pgen.1006052
Sanson, 2001, Generating patterns from fields of cells. Examples from Drosophila segmentation, EMBO Rep., 2, 1083, 10.1093/embo-reports/kve255
Sarrazin, 2012, A segmentation clock with two-segment periodicity in insects, Science, 336, 338, 10.1126/science.1218256
Schindelin, 2012, Fiji: an open-source platform for biological-image analysis, Nat. Methods, 9, 676, 10.1038/nmeth.2019
Schönauer, 2016, The Wnt and Delta-Notch signalling pathways interact to direct pair-rule gene expression via caudal during segment addition in the spider Parasteatoda tepidariorum, Development, 143, 2455, 10.1242/dev.131656
Schröder, 2003, The genes orthodenticle and hunchback substitute for bicoid in the beetle Tribolium, Nature, 422, 621, 10.1038/nature01536
Schroeder, 2011, How to make stripes: deciphering the transition from non-periodic to periodic patterns in Drosophila segmentation, Development, 138, 3067, 10.1242/dev.062141
Schwager, 2017, The house spider genome reveals an ancient whole-genome duplication during arachnid evolution, BMC Biol., 15, 62, 10.1186/s12915-017-0399-x
Simonnet, 2004, hedgehog is a segment polarity gene in a crustacean and a chelicerate, Dev. Genes Evol., 214, 537, 10.1007/s00427-004-0435-z
St Johnston, 1992, The origin of pattern and polarity in the Drosophila embryo, Cell, 68, 201, 10.1016/0092-8674(92)90466-P
Stollewerk, 2003, Involvement of Notch and Delta genes in spider segmentation, Nature, 423, 863, 10.1038/nature01682
Suzuki, 1995, Early embryonic development, including germ-disk stage, in the Theridiid spider Achaearanea japonica (Bös. et Str.), J. Morphol., 224, 147, 10.1002/jmor.1052240204
Tabata, 1992, The Drosophila hedgehog gene is expressed specifically in posterior compartment cells and is a target of engrailed regulation, Genes Dev., 6, 2635, 10.1101/gad.6.12b.2635
Tautz, 2004, Segmentation, Dev. Cell., 7, 301, 10.1016/j.devcel.2004.08.008
Thompson, 1917
True, 2001, Developmental system drift and flexibility in evolutionary trajectories, Evol. Dev., 3, 109, 10.1046/j.1525-142x.2001.003002109.x
Urdy, 2012, On the evolution of morphogenetic models: mechano-chemical interactions and an integrated view of cell differentiation, growth, pattern formation and morphogenesis, Biol. Rev. Camb. Philos. Soc., 87, 786, 10.1111/j.1469-185X.2012.00221.x
Varjosalo, 2008, Hedgehog: functions and mechanisms, Genes Dev., 22, 2454, 10.1101/gad.1693608
Williams, 2017, Linking gene regulation to cell behaviors in the posterior growth zone of sequentially segmenting arthropods, Arthropod Struct. Dev., 46, 380, 10.1016/j.asd.2016.10.003
Wotton, 2015, Quantitative system drift compensates for altered maternal inputs to the gap gene network of the scuttle fly Megaselia abdita, Elife, 4