A phylogeny of the Passerida (Aves: Passeriformes) based on mitochondrial 12S ribosomal RNA gene
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Alström P, Ericson PG, Olsson U, Sundberg P (2006) Phylogeny and classification of the avian superfamily Sylvioidea. Mol Phylogenet Evol 38:381–397
Alström P, Fregin S, Norman JA, Ericson PGP, Christidis L, Olsson U (2011) Multilocus analysis of a taxonomically densely sampled dataset reveal extensive non-monophyly in the avian family Locustellidae. Mol Phylogenet Evol 58:513–526
Ames PL (1971) The morphology of the syrinx in passerine birds. Bull Peabody Mus Nat Hist 37:1–194
Barker FK, Barrowclough GF, Groth JG (2002) A phylogenetic hypothesis for passerine birds: taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data. Proc R Soc Lond B 269:295–308
Barker FK, Cibois A, Schikler P, Feinstein J, Cracraft J (2004) Phylogeny and diversification of the largest avian radiation. Proc Nat Acad Sci USA 101:11040–11045
Bennett PM, Owens IPF (2002) Evolutionary Ecology of Birds. Life Histories, Mating Systems and Extinction. Oxford University Press, New York
Beresford P, Barker FK, Ryan PG, Crowe TM (2005) African endemics span the tree of songbirds (Passeri): molecular systematics of several evolutionary ‘enigmas’. Proc R Soc Lond B 272:849–858
Cibois A, Cracraft J (2004) Assessing the passerine “Tapestry”: phylogenetic relationships of the Muscicapoidea inferred from nuclear DNA sequences. Mol Phylogenet Evol 32:264–273
Cibois A, Pasquet E, Schulenberg TS (1999) Molecular systematics of the Malagasy babblers (Passeriformes: Timaliidae) and warblers (Passeriformes: Sylviidae), based on cytochrome b and 16S rRNA sequences. Mol Phylogenet Evol 13:581–595
Ericson PGP, Johansson US (2003) Phylogeny of Passerida (Aves: Passeriformes) based on nuclear and mitochondrial sequence data. Mol Phylogenet Evol 29:126–138
Ericson PGP, Christidis L, Cooper A, Irestedt M, Jackson J, Johansson US, Norman JA (2002) A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrens. Proc R Soc Lond B 269:235–241
Fregin S, Haase M, Olsson U, Alström P (2012) New insights into family relationships within the avian superfamily Sylvioidea (Passeriformes) based on seven molecular markers. Evol Biol 12:157
Fuchs J, Fjeldsa J, Bowie RC, Voelker G, Pasquet E (2006) The African warbler genus Hyliota as a lost lineage in the Oscine songbird tree: molecular support for an African origin of the Passerida. Mol Phylogenet Evol 39:186–197
Harshman J (1994) Reweaving the tapestry: what can we learn from Sibley and Ahlquist (1990)? Auk 111:377–388
Hawkins BA, Diniz-Filho JAF, Jaramillo CA, Soeller SA (2006) Post-Eocene climate change, niche conservatism, and the latitudinal diversity gradient of New World birds. J Biogeogr 33:770–780
Huelsenbeck JP, Ronquist F (2001) MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754–755
Hume A (1871) Stray notes on ornithology in India. Ibis 3:403–413
James HF, Ericson PGP, Slikas B, Lei F-M, Gill FB, Olson SL (2003) Pseudopodoces humilis, a misclassified terrestrial tit (Aves: Paridae) of the Tibetan Plateau: evolutionary consequences of shifting adaptive zones. Ibis 145:185–202
Johansson US, Fjeldsa J, Bowie RCK (2008) Phylogenetic relationships within Passerida (Aves: Passeriformes): a review and a new molecular phylogeny based on three nuclear intron markers. Mol Phylogenet Evol 48:858–876
Jonsson KA, Fjeldsa J (2006) A phylogenetic supertree of oscine passerine birds (Aves: Passeri). Zool Scr 35:149–186
Lanyon SM (1992) Review: phylogeny and classification of birds: a study in molecular evolution. Condor 94:304–307
Lovette IJ, Perez-Eman JL, Sullivan JP, Banks RC, Fiorentino I, Cordoba-Cordoba S, Echeverry-Galvis M, Barker FK, Burns KJ, Klicka J, Lanyon SM, Bermingham E (2010) A comprehensive multilocus phylogeny for the wood-warblers and a revised classification of the Parulidae (Aves). Mol Phylogenet Evol 57:753–770
Mindell DP (1992) DNA–DNA hybridization and avian phylogeny. In review: phylogeny and classification of birds: a study in molecular evolution (C. G. Sibley and J. E. Ahlquist). Syst Biol 41:126–134
Monroe BL Jr, Sibley CG (1993) A World Checklist of Birds. Yale University Press, London
Nabholz B, Jarvis ED, Ellegren H (2010) Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny. Mol Phylogenet Evol 57:466–470
Outlaw DC, Voelker G (2006) Systematics of Ficedula flycatchers (Muscicapidae): a molecular reassessment of a taxonomic enigma. Mol Phylogenet Evol 41:118–126
Pereira SL, Baker AJ (2006) A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clock. Mol Phylogenet Evol 23:1731–1740
Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817–818
Raikow RJ (1978) Appendicular myology and relationships of the New World nine-primaried oscines (Aves: Passeriformes). Bull Carnegie Mus Nat Hist 7:1–43
Riley JH (1930) Birds collected in Inner Mongolia, Kansu and Chili by the National Geographic Society’s central China Expedition under the direction of F. R. Wulsin. Proc U S Nat Mus 77:20–21
Sambrook J, Russell DW (2001) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, New York
Sangster G, Alström P, Forsmark E, Olsson U (2010) Multi-locus phylogenetic analysis of Old World chats and flycatchers reveals extensive paraphyly at family, subfamily and genus level (Aves: Muscicapidae). Mol Phylogenet Evol 57:380–392
Sheldon FH, Gill FB (1996) A reconsideration of songbird phylogeny, with emphasis on titmice and their sylvioid relatives. Syst Biol 45:473–495
Sibley CG, Ahlquist JE (1990) Phylogeny and Classification of Birds: A Study in Molecular Evolution. Yale University Press, London
Sibley CG, Monroe BL Jr (1990) Distribution and Taxonomy of Birds of the World. Yale University Press, London
Sorenson MD, Ast JC, Dimcheff DE, Yuri T, Mindell DP (1999) Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Mol Phylogenet Evol 12:105–114
Spicer GS, Dunipace L (2004) Molecular phylogeny of songbirds (Passeriformes) inferred from mitochondrial 16S ribosomal RNA gene sequences. Mol Phylogenet Evol 30:325–335
Starck JM, Ricklefs RE (1998) Avain Growth and Development. Oxford University Press, New York
Sturmbauer C, Berger B, Dallinger R, Foger M (1998) Mitochondrial phylogeny of the genus Regulus and implications on the evolution of breeding behavior in sylvioid songbirds. Mol Phylogenet Evol 10:144–149
Swofford DL (2002) PAUP*: Phylogenetic Analysis using Parsimony and Other Methods: Beta Version. Sinauer Associates, Massachusetts
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA 4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal X windows interface: flexible strategies for multiple sequence: alignment aided by quality analysis tools. Nucleic Acids Res 24:4876–4882
Tordoff HB (1954) A systematic study of the avian family Fringillidae based on the structure of the skull. Misc Publ Mus Zool Univ Mich 81:1–42
Treplin S, Siegert R, Bleidorn C, Thompson HS, Fotso R, Tiedemann R (2008) Molecular phylogeny of songbirds (Aves: Passeriformes) and the relative utility of common nuclear marker loci. Cladistics 24:328–349
Voelker G, Spellman GM (2004) Nuclear and mitochondrial DNA evidence of polyphyly in the avian superfamily Muscicapoidea. Mol Phylogenet Evol 30:386–394
Voous KH (1985) Passeriformes. In: Campbell B, Lack E (eds) A Dictionary of Birds. T. and A.D. Poyser, Carlton, UK, pp 440–441
Vun VF, Mahani MC, Lakim M, Ampeng A, Md-Zain BM (2011) Phylogenetic relationships of leaf mokeys (Presbytis:Colobinae) based on cytochrome b and 12S rRNA genes. Genet Mol Res 10:368–381
