A new chapter in the transcription SAGA

Current Opinion in Structural Biology - Tập 21 - Trang 767-774 - 2011
Nadine L Samara1, Cynthia Wolberger1
1Department of Biophysics and Biophysical Chemistry and the Howard Hughes Medical Institute, 725 N. Wolfe Street, Baltimore, MD 21205, USA

Tài liệu tham khảo

Lee, 2000, Transcription of eukaryotic protein-coding genes, Annu Rev Genet, 34, 77, 10.1146/annurev.genet.34.1.77 Weake, 2010, Inducible gene expression: diverse regulatory mechanisms, Nat Rev Genet, 11, 426, 10.1038/nrg2781 Naar, 2001, Transcriptional coactivator complexes, Annu Rev Biochem, 70, 475, 10.1146/annurev.biochem.70.1.475 Baker, 2007, The SAGA continues: expanding the cellular role of a transcriptional co-activator complex, Oncogene, 26, 5329, 10.1038/sj.onc.1210603 Koutelou, 2010, Multiple faces of the SAGA complex, Curr Opin Cell Biol, 22, 374, 10.1016/j.ceb.2010.03.005 Rodriguez-Navarro, 2009, Insights into SAGA function during gene expression, EMBO Rep, 10, 843, 10.1038/embor.2009.168 Daniel, 2004, Deubiquitination of histone H2B by a yeast acetyltransferase complex regulates transcription, J Biol Chem, 279, 1867, 10.1074/jbc.C300494200 Wyce, 2007, H2B ubiquitylation acts as a barrier to Ctk1 nucleosomal recruitment prior to removal by Ubp8 within a SAGA-related complex, Mol Cell, 27, 275, 10.1016/j.molcel.2007.01.035 Govind, 2007, Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions, Mol Cell, 25, 31, 10.1016/j.molcel.2006.11.020 Pascual-Garcia, 2008, Sus1 is recruited to coding regions and functions during transcription elongation in association with SAGA and TREX2, Genes Dev, 22, 2811, 10.1101/gad.483308 Zhang, 2008, The putative cancer stem cell marker USP22 is a subunit of the human SAGA complex required for activated transcription and cell-cycle progression, Mol Cell, 29, 102, 10.1016/j.molcel.2007.12.015 Zhao, 2008, A TFTC/STAGA module mediates histone H2A and H2B deubiquitination, coactivates nuclear receptors, and counteracts heterochromatin silencing, Mol Cell, 29, 92, 10.1016/j.molcel.2007.12.011 Brownell, 1996, Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation, Cell, 84, 843, 10.1016/S0092-8674(00)81063-6 Henry, 2003, Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8, Genes Dev, 17, 2648, 10.1101/gad.1144003 Rojas, 1999, Structure of Tetrahymena GCN5 bound to coenzyme A and a histone H3 peptide, Nature, 401, 93, 10.1038/43487 Trievel, 1999, Crystal structure and mechanism of histone acetylation of the yeast GCN5 transcriptional coactivator, Proc Natl Acad Sci USA, 96, 8931, 10.1073/pnas.96.16.8931 Owen, 2000, The structural basis for the recognition of acetylated histone H4 by the bromodomain of histone acetyltransferase gcn5p, EMBO J, 19, 6141, 10.1093/emboj/19.22.6141 Balasubramanian, 2002, Role of the Ada2 and Ada3 transcriptional coactivators in histone acetylation, J Biol Chem, 277, 7989, 10.1074/jbc.M110849200 Kohler, 2008, Yeast Ataxin-7 links histone deubiquitination with gene gating and mRNA export, Nat Cell Biol, 10, 707, 10.1038/ncb1733 Lee, 2011, Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes, Mol Syst Biol, 7, 503, 10.1038/msb.2011.40 Lee, 2009, Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes, Epigenetics Chromatin, 2, 2, 10.1186/1756-8935-2-2 Rodriguez-Navarro, 2004, Sus1, a functional component of the SAGA histone acetylase complex and the nuclear pore-associated mRNA export machinery, Cell, 116, 75, 10.1016/S0092-8674(03)01025-0 Komander, 2009, Breaking the chains: structure and function of the deubiquitinases, Nat Rev Mol Cell Biol, 10, 550, 10.1038/nrm2731 David, 1997, Cloning of the SCA7 gene reveals a highly unstable CAG repeat expansion, Nat Genet, 17, 65, 10.1038/ng0997-65 Kohler, 2010, Structural basis for assembly and activation of the heterotetrameric SAGA histone H2B deubiquitinase module, Cell, 141, 606, 10.1016/j.cell.2010.04.026 Samara, 2010, Structural insights into the assembly and function of the SAGA deubiquitinating module, Science, 328, 1025, 10.1126/science.1190049 Reyes-Turcu, 2006, The ubiquitin binding domain ZnF UBP recognizes the C-terminal diglycine motif of unanchored ubiquitin, Cell, 124, 1197, 10.1016/j.cell.2006.02.038 Bonnet, 2008, Zinc-finger UBPs: regulators of deubiquitylation, Trends Biochem Sci, 33, 369, 10.1016/j.tibs.2008.05.005 Jani, 2009, Sus1, Cdc31, and the Sac3 CID region form a conserved interaction platform that promotes nuclear pore association and mRNA export, Mol Cell, 33, 727, 10.1016/j.molcel.2009.01.033 Hu, 2002, Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde, Cell, 111, 1041, 10.1016/S0092-8674(02)01199-6 Hu, 2005, Structure and mechanisms of the proteasome-associated deubiquitinating enzyme USP14, EMBO J, 24, 3747, 10.1038/sj.emboj.7600832 Ye, 2009, Dissection of USP catalytic domains reveals five common insertion points, Mol Biosyst, 5, 1797, 10.1039/b907669g Atanassov, 2009, Gcn5 and SAGA regulate shelterin protein turnover and telomere maintenance, Mol Cell, 35, 352, 10.1016/j.molcel.2009.06.015 Weake, 2008, SAGA-mediated H2B deubiquitination controls the development of neuronal connectivity in the Drosophila visual system, EMBO J, 27, 394, 10.1038/sj.emboj.7601966 Scheuermann, 2010, Histone H2A deubiquitinase activity of the Polycomb repressive complex PR-DUB, Nature, 465, 243, 10.1038/nature08966 Avvakumov, 2006, Amino-terminal dimerization, NRDP1-rhodanese interaction, and inhibited catalytic domain conformation of the ubiquitin-specific protease 8 (USP8), J Biol Chem, 281, 38061, 10.1074/jbc.M606704200 Lai, 2010, Solution NMR characterization of Sgf73(1-104) indicates that Zn ion is required to stabilize zinc finger motif, Biochem Biophys Res Commun, 397, 436, 10.1016/j.bbrc.2010.05.118 Ellisdon, 2009, Structural basis for the interaction between yeast saga complex components SGF11 and SUS1, J Biol Chem Bonnet, 2010, The structural plasticity of SCA7 domains defines their differential nucleosome-binding properties, EMBO Rep, 11, 612, 10.1038/embor.2010.98 Briggs, 2001, Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae, Genes Dev, 15, 3286, 10.1101/gad.940201 Roguev, 2001, The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4, EMBO J, 20, 7137, 10.1093/emboj/20.24.7137 Pray-Grant, 2005, Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation, Nature, 433, 434, 10.1038/nature03242 Bian, 2011, Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation, EMBO J, 30, 2829, 10.1038/emboj.2011.193