A multi-locus approach to elucidating the evolutionary history of the clingfish Tomicodon petersii (Gobiesocidae) in the Tropical Eastern Pacific

Adams, 2010, Modeled interactions of mesoscale eddies with the East Pacific Rise: Implications for larval dispersal, Deep-Sea Res. I., 57, 1163, 10.1016/j.dsr.2010.06.009 Ávila, 2020, Pliocene and Late Pleistocene Actinopterygian fishes from Santa Maria Island, Azores (NE Atlantic Ocean): Palaeoecological and Palaeobiogeographical implications, Geol. Mag., 157, 1526, 10.1017/S0016756820000035 Ayala-Duval, E., Maldonado-Monroy, M. del C., Becerril-Martinez, J.A., Ayala-Fernández, X.M., Barrios-Orozco, V., García-Tamayo, D.T., Juárez-Ortiz, C., 1996. Spatial and temporal distribution of zooplankton biomass in the Gulf of Tehuantepec, Mexico. Pacific Sci. 4,415-426. Bacon, 2015, Biological evidence supports an early and complex emergence of the isthmus of Panama, Proc. Natl. Acad. Sci. USA, 112, 6110, 10.1073/pnas.1423853112 Bagley, 2015, Assessing species boundaries using multilocus species delimitation in a morphologically conserved group of Neotropical freshwater fishes, the Poecilia sphenops species complex (Poeciliidae), PLoS ONE, 10, e0121139, 10.1371/journal.pone.0121139 Baldwin, 2011, Seven new species within western Atlantic Starksia atlantica, S. lepicoela, and S. sluiteri, (Teleostei, Labrisomidae), with comments on congruence of DNA barcodes and species, ZooKeys., 79, 21, 10.3897/zookeys.79.1045 Barrett, J.C., Fry, C., Maller, J., Daly, J.M., 2005. Haploview: Analysis and visualization of LD and haplotype maps. Bioinform. 2, 263-265. https://doi.org/10.1093/bioinformatics/bth457. Beldade, R., Pedro, T., Gonçalves, E.J., 2007. Pelagic larval duration of 10 temperate cryptobenthic fishes. J. Fish Biol. 71, 376-382. https://doi.org/10.1111/j.1095-8649.2007.01491.x. Bernardi, 2014, Darwin’s fishes: phylogeography of Galapagos Islands reef fishes, Bull. Mar. Sci., 90, 1, 10.5343/bms.2013.1036 Betancourt-Resendes, 2019, Phylogeographic patterns and species delimitation in the endangered silverside “humboldtianum” clade (Pisces: Atherinopsidae) in central Mexico: understanding their evolutionary history, Org. Divers. Evol., 20, 313, 10.1007/s13127-019-00419-x Bouckaert, 2019, BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis, PLoS Comput Biol, 15, e1006650, 10.1371/journal.pcbi.1006650 Buonaccorsi, V.P., McDowell, J.R., Graves, J.E., 2001. Reconciling patterns of inter-ocean molecular variance from four classes of molecular markers in blue marlin (Makaira nigricans). Mol. Ecol. 10, 1179-1196. https://doi.org/10.1046/j.1365-294X.2001.01270.x. Brandl, S.J., Goatley, C.H.F.R., Bellwood, D.R., Tornabene, L., 2018. The hidden half: ecology and evolution of cryptobenthic fishes on coral reefs. Biol. Rev. Camb. Philos. Soc. 93, 1846-1873. https://doi.org/10.1111/brv.12423. Briggs, 1955, A monograph of the clingfishes (order Xenopterygii), Stanf. Ichthyol. Bull., 6, 1 Briggs, 2012, A realignment of marine biogeographic provinces with particular reference to fish distribution, J. Biogeogr., 39, 12, 10.1111/j.1365-2699.2011.02613.x Brogan, 1994, Distribution and retention of larval fishes near reefs in the Gulf of California, Mar. Ecol. Prog. Ser., 115, 1, 10.3354/meps115001 Coates, 1992, Closure of the Isthmus of Panama: The near-shore marine record of Costa Rica and western Panama, Geol. Soc. Am. Bull., 7, 814, 10.1130/0016-7606(1992)104<0814:COTIOP>2.3.CO;2 Contreras, 2013, The contrasting hatching patterns and larval growth of two sympatric clingfishes inferred by otolith microstructure analysis, Mar. Freshw. Res., 64, 157, 10.1071/MF12232 Conway, 2014, Cryptic diversity and venom glands in Western Atlantic clingfishes of the genus Acyrtus (Teleostei: Gobiesocidae), PLoS ONE, 9, e97664, 10.1371/journal.pone.0097664 Conway, 2020, Molecular Phylogenetics of the Clingfishes (Teleostei: Gobiesocidae)—Implications for Classification, Copeia, 108, 886, 10.1643/CI2020054 Conway, 2017, Molecular systematics of the New World clingfish genus Gobiesox (Teleostei: Gobiesocidae) and the origin of a freshwater clade, Mol. Phylogenet. Evol., 112, 138, 10.1016/j.ympev.2017.04.024 Combosch, 2011, Population genetics of an ecosystem-defining reef coral Pocillopora damicornis in the Tropical Eastern Pacific, PLoS ONE, 6, e21200, 10.1371/journal.pone.0021200 Chavez, 1991, The Galapagos islands and their relation to oceanographic processes in the Tropical Pacific, vol 8, 9 Craig, 2006, Phylogeography of the flag cabrilla Epinephelus labriformis (Serranidae): implications for the biogeography of the Tropical Eastern Pacific and the early stages of speciation in a marine shore fish, J. Biogeogr., 33, 969, 10.1111/j.1365-2699.2006.01467.x D’Croz, L.D., Mate, J.L., 2004. Experimental responses to elevated water temperature in genotypes of the reef coral Pocillopora damicornis from upwelling and non-upwelling environments in Panama. Coral Reefs. 23, 473–483. https://doi.org/10.1007/s00338-004-0397-7. Delrieu-Trottin, 2018, Evidence of cryptic species in the blenniid Cirripectes alboapicalis species complex, with zoogeographic implications for the South Pacific, ZooKeys, 810, 127, 10.3897/zookeys.810.28887 Deméré, 2003, Pinnipedimorph evolutionary biogeography, Bull. Am. Mus. Nat. Hist., 279, 32, 10.1206/0003-0090(2003)279<0032:C>2.0.CO;2 Dias, R.M., Lima, S.M.Q., Mendes, L.F., Almeida, D.F., Paiva, P.C., Britto, M.R., 2019. Different speciation processes in a cryptobenthic reef fish from the Western Tropical Atlantic. Hydrobiologia 837, 133-147. https://doi.org/10.1007/s10750-019-3966-z. Distche, 2017, From smooth to rough, from water to air: the intertidal habitat of Northern clingfish (Gobiesox maeandricus), Sci. Nat., 104, 33, 10.1007/s00114-017-1454-8 Duchêne, 2011, Mitogenome Phylogenetics: The Impact of Using Single Regions and Partitioning Schemes on Topology, Substitution Rate and Divergence Time Estimation, PLoS ONE, 6, e27138, 10.1371/journal.pone.0027138 Drummond, 2006, Relaxed phylogenetics and dating with confidence, PLoS Biol., 4, e88, 10.1371/journal.pbio.0040088 Drummond, A.J., Suchard, M.A., Xie, D., Rambaut, A., 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29, 1969-1973. https://doi.org/10.1093/molbev/mss075. Edgar, G.J., Banks, S., Fariña, J.M., Calvopiña, M., Martínez, C., 2004. Regional biogeography of shallow reef fish and macro-invertebrate communities in the Galapagos Archipelago. J. Biogeogr. 31, 1107-1124. https://doi.org/10.1111/j.1365-2699.2004.01055.x. Edler, D., Klein, J., Antonelli, A., Silvestro, D., 2019. RaxmlGUI 2.0 beta: a graphical interface and toolkit for phylogenetic analyses using RAxML. bioRxiv 800912. Excoffier, 2010, Arlequin ver. 3.5: A new series of programs to perform population genetics analyses under Linux and Windows, Mol. Ecol. Resour., 10, 564, 10.1111/j.1755-0998.2010.02847.x Eytan, 2010, Nuclear and mitochondrial sequence data reveal and conceal different genetic histories and population genetic processes in Caribbean reef fishes, Evolution, 64, 3380, 10.1111/j.1558-5646.2010.01071.x Faria, 2010, Ontogeny of swimming behaviour of two temperate clingfishes, Lepadogaster lepadogaster and L. purpurea (Gobiesocidae), Mar. Ecol. Prog. Ser., 414, 237, 10.3354/meps08692 Färber-Lorda, 1994, Distribution and abundance of euphausiids in the Gulf of Tehuantepec during wind forcing, Deep Sea Res. I., 41, 359, 10.1016/0967-0637(94)90008-6 Fernandes, 2017, The efficacy of clove oil as an anesthetic and in euthanasia procedure for small-sized tropical fishes, Braz. J. Biol., 77, 444, 10.1590/1519-6984.15015 Fiedler, P.C., Lavín, M.F., 2017. Oceanographic conditions of the Eastern Tropical Pacific, in: Glynn, P., Manzello, D., Enochs I., (Eds.), Coral reefs of the Eastern Tropical Pacific. Coral reefs of the World, Springer, Dordrecht, pp 59-83. https://doi.org/10.1007/978-94-017-7499-4_3. Fontaneto, 2011, Broad taxonomic sampling of mitochondrial cytochrome c oxidase subunit I does not solve the relationships between Rotifera and Acanthocephala, Zool. Anz., 250, 80, 10.1016/j.jcz.2010.11.005 Ford, A.G.P., Bullen, T.R., Pang, L., Genner, M.J., Bills, R., Flouri, T., Ngatunga, B.P, Rüber, L., Schliewen, U.K., Seehausen, O., Shechonge, A., Stiassny, M.L.J., Turner, G.F., Day, J.J., 2019. Molecular phylogeny of Oreochromis (Cichlidae: Oreochromini) reveals mito-nuclear discordance and multiple colonization of adverse aquatic environments. Mol. Phylogenet. Evol. 136, 215-226. https://doi.org/10.1016/j.ympev.2019.04.008un. Galván-Quesada, 2016, Molecular Phylogeny and Biogeography of the Amphidromous Fish Genus Dormitator Gill 1861 (Teleostei: Eleotridae), PLoS ONE, 11, e0153538, 10.1371/journal.pone.0153538 Garman, 1875, Notes on some fishes and reptiles from the western coast of South America, Proc. Boston Soc. Nat. Hist., 18, 202 Geist, D.J., Snell, H., Snell, H., Goddard, C., Kurz, M.D., 2014. A Paleogeography model of the Galapagos Islands and biogeographical and evolutionary implications, in: Harpp, K., d’Ozouville, N., Mittelstaedt, E., Graham, D. (Eds.), The Galapagos: a natural laboratory for the Earth Sciences. American Geophysical Union Monograph, Washington, DC, pp 145-166. https://doi.org/10.1002/9781118852538.ch8. Gibson, 1982, Recent studies on the biology of intertidal fishes, Oceanogr. Mar. Biol. Ann. Rev., 20, 363 Grehan, 2001, Biogeography and evolution of the Galapagos: integration of the biological and geological evidence, Biol. J. Linn. Soc., 74, 267, 10.1006/bijl.2001.0576 Hare, 2001, Prospects for nuclear gene Phylogeography, Trends. Ecol. Evol., 16, 700, 10.1016/S0169-5347(01)02326-6 Hastings, 2000, Biogeography of the tropical Eastern Pacific: distribution and phylogeny of Chaenopsid fishes, Zool. J. Linn. Soc., 128, 319, 10.1111/j.1096-3642.2000.tb00166.x Hastings, P.A, Dominici-Arosemena, A., 2010. Tomicodon petersii. The IUCN Red List of Threatened Species 2010: e.T183599A8142082. He, 2019, An examination of introgression and incomplete lineage sorting among three closely related species of chocolate-dipped damselfish (genus: Chromis), Ecol. Evol., 9, 5468, 10.1002/ece3.5142 Heled, J., Drummond, A.J., 2010. Bayesian inference of species trees from multilocus data. Mol. Biol. Evol. 27, 570-580. https://doi.org/10.1093/molbev/msp274. Hoban, M.L., Williams, J.T., 2020. Cirripectes matatakaro, a new species of combtooth blenny from the Central Pacific, illuminates the origins of the Hawaiian fish fauna. PeerJ, 8: e8852. https://doi.org/10.7717/peerj.8852. Huson, 2006, Application of phylogenetic networks in evolutionary studies, Mol. Biol. Evol., 23, 254, 10.1093/molbev/msj030 Jackson, N.D., Carstens, B.C., Morales, A.E., O’Meara, B.C., 2017. Species delimitation with gene flow. Syst. Biol., 66, 799-812. https://doi.org/10.1093/sysbio/syw117 PMID: 28003535. Jacobs, D.K., Haney, T.A., Louie, K.D., 2004. Genes, diversity, and geologic process on the Pacific coast. Annu. Rev. Earth Planet. Sci. 32, 601-52. https://doi.org/10.1146/annurev.earth.32.092203.122436. Jang-Liaw, 2019, Phylogeography of the Chinese false gudgeon, Abbottina rivularis, in East Asia, with special reference to the origin and artificial disturbance of Japanese populations, Ichthyol. Res., 66, 460, 10.1007/s10228-019-00686-w Jones, 2017, Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent, J. Math. Biol., 74, 447, 10.1007/s00285-016-1034-0 Jones, 2015, DISSECT: an assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent, Bioinformatics, 31, 991, 10.1093/bioinformatics/btu770 Jordan, 1882, Descriptions of thirty-three new species of fishes from Mazatlan, Mexico. Proc. U. S. Natl. Mus., 237, 338, 10.5479/si.00963801.4-237.338 Kameo, 2000, Biogeography of Neogene calcareous nannofossils in the Caribbean and the eastern equatorial Pacific—floral response to the emergence of the Isthmus of Panama, Mar. Micropaleontol., 39, 201, 10.1016/S0377-8398(00)00021-9 Kessler, 2006, The circulation of the eastern tropical Pacific: a review, Prog. Oceanogr., 69, 181, 10.1016/j.pocean.2006.03.009 Kumar, 2016, MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets, Mol. Biol. Evol., 33, 1870, 10.1093/molbev/msw054 Lanfear, 2012, PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyzes, Mol. Biol. Evol., 29, 1695, 10.1093/molbev/mss020 Larmuseau, 2010, Mito-nuclear discordance in the degree of population differentiation in a marine goby, Heredity, 105, 532, 10.1038/hdy.2010.9 Lequeux, 2018, Coral connectivity between equatorial Eastern Pacific marine protected areas: A biophysical modeling approach, PLoS ONE, 13, e0202995, 10.1371/journal.pone.0202995 Lessios, 2008, The great American schism: divergence of marine organisms after the rise of the Central American isthmus, Annu. Rev. Ecol. Evol. Syst., 39, 63, 10.1146/annurev.ecolsys.38.091206.095815 Lessios, H.A., Kessing, B.D., Robertson, D.R., Paulay, G., 1999. Phylogeography of the pantropical sea urchin Eucidaris in relation to land barriers and ocean currents. Evolution 53, 806-817. https://doi.org/10.1111/j.1558-5646.1999.tb05374.x. Li, 2020, Cryptic species in white Cloud Mountain minnow, Tanichthys albonubes: Taxonomic and conservation implications, Mol. Phylogenet. Evol., 153, 106950, 10.1016/j.ympev.2020.106950 Li, 2007, A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study, BMC Evol. Biol., 7, 44, 10.1186/1471-2148-7-44 Librado, 2009, DnaSP v5: a software for comprehensive analysis for DNA polymorphism data, Bioinf. Appl. Note., 25, 1451 Lin, 2013, Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes), BMC Evol. Biol., 13, 210, 10.1186/1471-2148-13-210 Liu, S.Y.V., Tuanmu, M.N., Rachmawati, R., Mahardika, G.N., Barber, P.H., 2019. Integrating phylogeographic and ecological niche approaches to delimitating cryptic lineages in the blue–green damselfish (Chromis viridis). PeerJ 7: e7384. https://doi.org/10.7717/peerj.7384. López-Chávez, O., Aceves-Medina, G., Saldierna-Martínez, R. J., Jiménez-Rosenberg, S. P., Murad-Serrano, J. P., Marín-Gutiérrez, Á., Hernández-Hernández, O., 2012. Changes in species composition and abundance of fish larvae from the Gulf of Tehuantepec, Mexico. CICIMAR Oceánides, 27(2): 1-11. http://dx.doi.org/10.37543/oceanides.v27i2.112. Marchant, S., Moran, A.L., Marko, P.B., 2015. Out-of-the tropics or trans-tropical dispersal? The origins of the disjunct distribution of the gooseneck barnacle Pollicipes elegans. Front. Zool. 12, 39. https://doi.org/10.1186/s12983-015-0131-z. Mazzei, 2021, Mechanisms of dispersal and establishment drive a stepping stone community assembly on seamounts and oceanic islands, Mar. Biol., 168, 109, 10.1007/s00227-021-03919-7 Mennesson, 2018, Phylogeography of Eleotris fusca (Teleostei: Gobioidei: Eleotridae) in the Indo-Pacific area reveals a cryptic species in the Indian Ocean, Conserv. Genet., 19, 1025, 10.1007/s10592-018-1063-x Meyers, 2013, Genealogical approaches to the temporal origins of the Central American gap: Speciation and divergence in Pacific Chthamalus (Sessilia: Chthamalidae), Rev. Biol. Trop., 61, 75, 10.15517/rbt.v61i1.10886 Miller, M.A., Schwartz, T., Pickett, B.E., He, S., Klem, E B., Scheuermann, R.H., Passarotti, M., Kaufman, S., O’Leary, M.A., 2015. A RESTful API for access to phylogenetic tools via the CIPRES Science Gateway. Evol. Bioinform. 11, 43-48. https://doi.org/10.4137%2FEBO.S21501. Miura, 2010, Molecular phylogenetics reveals differential divergence of coastal snails separated by the Isthmus of Panama, Mol. Phylogenet. Evol, 56, 40, 10.1016/j.ympev.2010.04.012 Miya, M., Nishida, M., 2000. Use of Mitogenomic Information in Teleostean Molecular Phylogenetics: A Tree-Based Exploration under the Maximum-Parsimony Optimality Criterion. Mol. Phylogenet. Evol. 17, 3:437-455. https://doi:10.1006/mpev.2000.0839. Mora, 2001, Tolerance to high temperatures and potential impact of sea warming on reef fishes of Gorgona Island (tropical eastern Pacific), Mar. Biol., 139, 765, 10.1007/s002270100626 Mora, 2005, Causes of latitudinal gradients in species richness: a test with the, endemic shorefishes of the Tropical Eastern Pacific, Ecology, 86, 1771, 10.1890/04-0883 Near, T.J., Dornburg, A., Eytan, R.I., Keck, B.P., Smith, W.L., Kuhn, K.L., Moore, J.A., Price, S.A., Burbrink, F.T., Friedman, M., Wainwright, P.C., 2013. Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes. PNAS 110, 12738–12743. https://doi.org/10.1073/pnas.1304661110. Neves, J.M.M., Almeida, J.P.F.A., Sturaro, M-J., Fabré, N.N., Pereira, R.J., Mott, T., 2020. Deep genetic divergence and paraphyly in cryptic species of Mugil fishes (Actinopterygii: Mugilidae). Syst. Biodivers. 0, 1-13. https://doi.org/10.1080/14772000.2020.1729892. ÓDea, A., Lessios, H.A., Coates, A.G., Eytan, R.I., Restrepo-Moreno, S.A., Cione, A.L., Collins, L.S., de Queiroz, A., Farris, D.W., Norris, R.D., Stallard, R.F., Woodburne, M.O., Aguilera, O., Aubry, M.P., Berggren, W.A., Budd, A.F., Cozzuol, M.A., Coppard, S.E., Duque-Caro, H., Finnegan, S., Gasparini, G.M., Grossman, E.L., Johnson, K.G., Keigwin, L.D., Knowlton, N., Leigh, E.G., Leonard-Pingel, J.S., Marko, P.B., Pyenson, N.D., Rachello-Dolmen, P.G., Soibelzon, E., Soibelzon, L., Todd, J.A., Vermeij, G.J., Jackson, J.B.C., 2016. Formation of the Isthmus of Panama. Sci. Adv. 2, e1600883.https://doi.org/10.1126/sciadv.1600883. ÓDea, A., Rodríguez, F., DeGracia, C., Coates, A.G., 2007. La paleontología marina en el Istmo de Panamá. Canto Rodado, 2:149-179. Palmerín‐Serrano, 2020, Evolutionary history of the reef fish Anisotremus interruptus (Perciformes: Haemulidae) throughout the Tropical Eastern Pacific, J. Zool. Syst. Evol. Res., 59, 148, 10.1111/jzs.12392 Palumbi, 1994, Genetic divergence, reproductive isolation, and marine speciation, Annu. Rev. Ecol. Syst., 25, 547, 10.1146/annurev.es.25.110194.002555 Pedraza-Marrón, C., 2014. Historia evolutiva del género Malacoctenus (Labrisomidae) en el Pacífico Oriental Tropical. Tesis de Maestría. Universidad Michoacana de San Nicolás de Hidalgo, Mexico. Pinacho-Pinacho, 2018, A hyper-diverse genus of acanthocephalans revealed by tree-based and non-tree-based species delimitation methods: ten cryptic species of Neoechinorhynchus in Middle American freshwater fishes, Mol. Phylogenet. Evol., 127, 30, 10.1016/j.ympev.2018.05.023 Pinheiro, 2017, Island biogeography of marine organisms, Nature, 549, 82, 10.1038/nature23680 Piñeros, 2019, Diversification of the genus Apogon (Lacepède, 1801) (Apogonidae: Perciformes) in the tropical eastern Pacific, Mol. Phylogenet. Evol., 132, 232, 10.1016/j.ympev.2018.12.010 Pitombo, 2007, Systematics and biogeography of Tropical Eastern Pacific Chthamalus with descriptions of two new species (Cirripedia, Thoracica), Zootaxa, 1574, 1, 10.11646/zootaxa.1574.1.1 Petzold, 2020, A comparative approach for species delimitation based on multiple methods of multi-locus DNA sequence analysis: A case study of the genus Giraffa (Mammalia, Cetartiodactyla), PLoS ONE, 15, e0217956, 10.1371/journal.pone.0217956 Prieto-Rios, 2014, Filogeografía de Holothuria (Halodeima) inornata Semper, 1868 (Echinodermata: Holothuroidea), Rev. Peru. Biol., 21, 155, 10.15381/rpb.v21i2.9818 Ragaini, 2002, Paleoecology and paleobiogeography of fossil mollusks from Isla Isabela (Galapagos, Ecuador), J. South Am. Earth Sci., 15, 381, 10.1016/S0895-9811(02)00046-9 Rambaut, A., 2014. FigTree 1.4.2, Available from http://tree.bio.ed.ac.uk/software/figtree/. Rambaut, A., Suchard, M.A., Xie, W., Drummond, A.J., 2013. Tracer v1.6, Available fromhttp://tree.bio.ed.ac.uk/software/tracer/. Rassmann, 1997, The evolutionary age of the Galapagos iguanas predates the age of the present Galapagos Islands, Mol. Phylogenet. Evol., 7, 158, 10.1006/mpev.1996.0386 Rice, 1989, Analyzing tables of statistical test, Evolution, 43, 223, 10.2307/2409177 Riginos, C., Nachman, M.W., 2001. Population subdivision in marine environments: the contributions of biogeography, geographical distance and discontinuous habitat to genetic differentiation in a blennioid fish, Axoclinus nigricaudus. Mol. Ecol. 10, 1439-1453. https://doi.org/10.1046/j.1365-294X.2001.01294.x. Robertson, D.R. Allen G.R., 2015. Shore fishes of the Tropical Eastern Pacific: online information system. Version 2.0. Smithsonian Tropical Research Institute, Balboa, Panama. Robertson, D.R., Cramer, K.L., 2009. Shore fishes and biogeographic subdivisions of the Tropical Eastern Pacific. Mar. Ecol. Prog. Ser. 380, 1-17. Rocha, L.A., Bowen, B.W., 2008. Speciation in coral-reef fishes. J. Fish Biol. 72, 1101-1121. https://doi.org/10.1111/j.1095-8649.2007.01770.x. Rodríguez-Rey, 2018, Evolutionary history of Bathygobius (Perciformes: Gobiidae) in the Atlantic biogeographic provinces: a new endemic species and old mitochondrial lineages, Zool. J. Linnean Soc., 182, 360, 10.1093/zoolinnean/zlx026 Rodríguez-Rubio, 2003, On the seasonal circulation within the Panama Bight derived from satellite observations of wind, altimetry and sea surface temperature, Geophys. Res. Lett., 30, 1410, 10.1029/2002GL016794 Ronquist, 2012, MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space, Syst. Biol., 61, 539, 10.1093/sysbio/sys029 Sambrook, 2001 Sandoval-Huerta, 2019, The evolutionary history of the goby Elacatinus puncticulatus in the tropical eastern pacific: effects of habitat discontinuities and local environmental variability, Mol. Phylogenet. Evol., 130, 269, 10.1016/j.ympev.2018.10.020 Schwarzhans, 2017, Otoliths in situ from Sarmatian (Middle Miocene) fishes of the Paratethys. Part IV: Scorpaenidae, Labridae, and Gobiesocidae, Swiss J. Palaeontol., 136, 93, 10.1007/s13358-017-0124-y Shen, 2011, Plio-Pleistocene sea level and temperature fluctuations in the northwestern Pacific promoted speciation in the globally-distributed flathead mullet Mugil cephalus, BMC Evol. Biol., 11, 83, 10.1186/1471-2148-11-83 Springer, V.G., 1959. Systematics and zoogeography of the Clinid fishes of the subtribe Labrisomini Hubbs. Department of Zoology and Institute of Marine Science, University of Texas. 5, 417-492. Stephens, 2003, A comparison of Bayesian methods for haplotype reconstruction from population genotype data, Am. J. Hum. Genet., 73, 1162, 10.1086/379378 Stepien, 1992, Evolution and biography of the Clinidae (Teleostei: Blennioidei), Copeia, 2, 375, 10.2307/1446198 Stepien, 1997, The evolution of blennioid fishes based on an analysis of mitochondrial 12S Rdna, 245 Sudasinghe, 2020, A molecular phylogeny of the freshwater-fish genus Rasbora (Teleostei: Cyprinidae) in Sri Lanka reveals a remarkable diversification—And a cryptic species, J. Zool. Syst. Evol. Res., 00, 1 Sukumaran, 2017, Multispecies coalescent delimits structure, not species, Proc Natl Acad Sci USA, 114, 1607, 10.1073/pnas.1607921114 Tornabene, 2010, Exploring the diversity of western Atlantic Bathygobius (Teleostei: Gobiidae) with cytochrome c oxidase-I, with descriptions of two new species, Aqua, 16, 141 Torres-Hernández, 2020, Independent evolutionary lineage of the clingfish Gobiesox adustus (Gobiesocidae) from Isla del Coco, Costa Rica, Rev. Biol. Trop., 68, S306, 10.15517/rbt.v68iS1.41201 Torres-Hernández, 2016, Annotated checklist of the coastal ichthyofauna from Michoacán State, Mexico, ZooKeys, 606, 99, 10.3897/zookeys.606.9004 Trasviña, A., Lluch-Cota, C.D., Filonov, A.E., Gallegos, A., 1999. Oceanografía y El Niño. In: Magaña, R.V. (Ed.), Los Impactos de El Niño en México: UNAM, pp 69–101. Underwood, 2019, Cryptic lineages in the Wolf Cardinalfish living in sympatry on remote coral atolls, Mol. Phylogenet. Evol., 132, 183, 10.1016/j.ympev.2018.12.001 Valles-Jimenez, 2004, Population genetic structure of Pacific white shrimp (Litopenaeus vannamei) from Mexico to Panama: microsatellite DNA variation, Mar Biotechnol., 6, 475, 10.1007/s10126-004-3138-6 Vargas, S., Guzman, H.M., Breedy, O., 2008. Distribution patterns of the genus Pacifigorgia (Octocorallia: Gorgoniidae): track compatibility analysis and parsimony analysis of endemicity. J. Biogeogr. 35, 241-247. https://doi.org/10.1111/j.1365-2699.2007.01810.x. Victor, 2013, The Caribbean roughhead triplefin (Enneanectes boehlkei): DNA barcoding reveals a complex of four West Indian sympatric cryptic species (Teleostei: Blennioidei: Tripterygiidae), J. Ocean. Sci. Found., 7, 44 Victor, B.C., 2015. How many coral reef fish species are there? Cryptic diversity and the new molecular taxonomy, in: Ecology of Fishes on Coral Reefs (ed. C. Mora). Cambridge University Press, Cambridge pp. 76–87. Vinagre, 2016, Vulnerability to climate warming and acclimation capacity of tropical and temperate coastal organisms, Ecol. Indic., 62, 317, 10.1016/j.ecolind.2015.11.010 Ward, 2009, DNA barcode divergence among species and genera of birds and fishes, Mol. Ecol. Resour., 9, 1077, 10.1111/j.1755-0998.2009.02541.x Winterbottom, R., Hanner, R.H., li Burridge, M., Zur, M., 2014. A cornucopia of cryptic species - a DNA barcode analysis of the gobiid fish genus Trimma (Percomorpha, Gobiiformes). Zookyes 381, 79-111. https://doi.org/10.3897/zookeys.381.6445. Yang, 2015, The BPP program for species tree estimation and species delimitation, Curr. Zool., 61, 854, 10.1093/czoolo/61.5.854 Yang, 2010, Bayesian species delimitation using multilocus sequence data, PNAS, 107, 9264, 10.1073/pnas.0913022107