A master autoantigen-ome links alternative splicing, female predilection, and COVID-19 to autoimmune diseases
Tài liệu tham khảo
Damoiseaux, 2021, Autoantibodies and SARS-CoV2 infection: the spectrum from association to clinical implication: report of the 15th Dresden Symposium on Autoantibodies, Autoimmun. Rev., 21, 103012, 10.1016/j.autrev.2021.103012
Wang, 2021
Wang, 2021, An autoantigen profile of human A549 lung cells reveals viral and host etiologic molecular attributes of autoimmunity in COVID-19, J. Autoimmun., 120, 102644, 10.1016/j.jaut.2021.102644
Wang, 2021, An autoantigen profile of human A549 lung cells reveals viral and host etiologic molecular attributes of autoimmunity in COVID-19, bioRxiv
Wang, 2021
Wang, 2021
Wang, 2011, Dermatan sulfate interacts with dead cells and regulates CD5(+) B-cell fate: implications for a key role in autoimmunity, Am. J. Pathol., 178, 2168, 10.1016/j.ajpath.2011.01.028
Rho, 2011, Human proteins with affinity for dermatan sulfate have the propensity to become autoantigens, Am. J. Pathol., 178, 2177, 10.1016/j.ajpath.2011.01.031
Lee, 2021, Dermatan sulfate is a potential regulator of IgH via interactions with pre-BCR, GTF2I, and BiP ER complex in pre-B lymphoblasts, Front. Immunol., 12
Lee, 2021, Dermatan sulfate is a potential master regulator of IgH via interactions with pre-BCR, GTF2I, and BiP ER complex in pre-B lymphoblasts, bioRxiv
Wang, 2002, Glycosaminoglycans are a potential cause of rheumatoid arthritis, 99, 14362
Wang, 2020, A proteomic repertoire of autoantigens identified from the classic autoantibody clinical test substrate HEp-2 cells, Clin. Proteonomics, 17, 35, 10.1186/s12014-020-09298-3
Zhang, 2019, A comprehensive autoantigen-ome of autoimmune liver diseases identified from dermatan sulfate affinity enrichment of liver tissue proteins, BMC Immunol., 20, 21, 10.1186/s12865-019-0304-1
Zhang, 2019, A repertoire of 124 potential autoantigens for autoimmune kidney diseases identified by dermatan sulfate affinity enrichment of kidney tissue proteins, PLoS One, 14
Zhou, 2019, Metascape provides a biologist-oriented resource for the analysis of systems-level datasets, Nat. Commun., 10, 1523, 10.1038/s41467-019-09234-6
Zhang, 2020, Single-cell landscape of immunological responses in patients with COVID-19, Nat. Immunol., 21, 1107, 10.1038/s41590-020-0762-x
Davies, 2020, Comparative multiplexed interactomics of SARS-CoV-2 and homologous coronavirus nonstructural proteins identifies unique and shared host-cell dependencies, ACS Infect. Dis., 6, 3174, 10.1021/acsinfecdis.0c00500
Klann, 2020, Growth factor receptor signaling inhibition prevents SARS-CoV-2 replication, Mol. Cell, 80, 10.1016/j.molcel.2020.08.006
Sun, 2020, Comparative transcriptome analysis reveals the intensive early stage responses of host cells to SARS-CoV-2 infection, Front. Microbiol., 11, 593857, 10.3389/fmicb.2020.593857
Bojkova, 2020, Proteomics of SARS-CoV-2-infected host cells reveals therapy targets, Nature, 583, 469, 10.1038/s41586-020-2332-7
Wilk, 2020, A single-cell atlas of the peripheral immune response in patients with severe COVID-19, Nat. Med., 26, 1070, 10.1038/s41591-020-0944-y
Lieberman, 2020, In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age, PLoS Biol., 18, 10.1371/journal.pbio.3000849
Riva, 2020, Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing, Nature, 586, 113, 10.1038/s41586-020-2577-1
Bouhaddou, 2020, The global phosphorylation landscape of SARS-CoV-2 infection, Cell, 182, 685, 10.1016/j.cell.2020.06.034
Blanco-Melo, 2020, Imbalanced host response to SARS-CoV-2 drives development of COVID-19, Cell, 181, 10.1016/j.cell.2020.04.026
Shen, 2020, Proteomic and metabolomic characterization of COVID-19 patient sera, Cell, 182, 59, 10.1016/j.cell.2020.05.032
Lamers, 2020, vol. 369, 50
Gordon, 2020, A SARS-CoV-2 protein interaction map reveals targets for drug repurposing, Nature, 583, 459, 10.1038/s41586-020-2286-9
Xiong, 2020, Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients, Emerg. Microb. Infect., 9, 761, 10.1080/22221751.2020.1747363
Vanderheiden, 2020, Type I and type III interferons restrict SARS-CoV-2 infection of human airway epithelial cultures, J. Virol., 94
Appelberg, 2020, Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells, Emerg. Microb. Infect., 9, 1748, 10.1080/22221751.2020.1799723
Stukalov, 2020, Multi-level proteomics reveals host-perturbation strategies of SARS-CoV-2 and SARS-CoV, bioRxiv
Emanuel, 2020, Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention, bioRxiv
Li, 2020, Urine proteome of COVID-19 patients, medRxiv : Preprint Server Health Sci.
Liao, 2020, Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19, Nat. Med., 26, 842, 10.1038/s41591-020-0901-9
Laurent, 2020, Global BioID-based SARS-CoV-2 proteins proximal interactome unveils novel ties between viral polypeptides and host factors involved in multiple COVID19-associated mechanisms, bioRxiv
Szklarczyk, 2019, STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets, Nucleic Acids Res., 47, D607, 10.1093/nar/gky1131
Ge, 2020, ShinyGO: a graphical gene-set enrichment tool for animals and plants, Bioinformatics, 36, 2628, 10.1093/bioinformatics/btz931
Ng, 2004, Increased noncanonical splicing of autoantigen transcripts provides the structural basis for expression of untolerized epitopes, J. Allergy Clin. Immunol., 114, 1463, 10.1016/j.jaci.2004.09.006
Chan, 1995, 52-kD SS-A/Ro: genomic structure and identification of an alternatively spliced transcript encoding a novel leucine zipper-minus autoantigen expressed in fetal and adult heart, J. Exp. Med., 182, 983, 10.1084/jem.182.4.983
Bachmann, 1996, Different La/SS-B mRNA isoforms are expressed in salivary gland tissue of patients with primary Sjögren's syndrome, J. Autoimmun., 9, 757, 10.1006/jaut.1996.0098
Beck, 2020, Somatic mutations in UBA1 and severe adult-onset autoinflammatory disease, N. Engl. J. Med., 383, 2628, 10.1056/NEJMoa2026834
Goto, 2009, Inactive X chromosome-specific histone H3 modifications and CpG hypomethylation flank a chromatin boundary between an X-inactivated and an escape gene, Nucleic Acids Res., 37, 7416, 10.1093/nar/gkp860
Carrel, 1996, X inactivation analysis and DNA methylation studies of the ubiquitin activating enzyme E1 and PCTAIRE-1 genes in human and mouse, Hum. Mol. Genet., 5, 391, 10.1093/hmg/5.3.391
Witt, 2019, Sex-specific differences in the intracellular proteome of human endothelial cells from dizygotic twins, J. Proteonomics, 201, 48, 10.1016/j.jprot.2019.03.016
Tukiainen, 2017, Landscape of X chromosome inactivation across human tissues, Nature, 550, 244, 10.1038/nature24265
Berletch, 2011, Genes that escape from X inactivation, Hum. Genet., 130, 237, 10.1007/s00439-011-1011-z
Schoeftner, 2009, Telomere shortening relaxes X chromosome inactivation and forces global transcriptome alterations, 106, 19393
