A genome‐wide scan for loci predisposing to non‐syndromic cleft lip with or without cleft palate in two large Syrian families

American Journal of Medical Genetics, Part A - Tập 123A Số 2 - Trang 140-147 - 2003
Diego F. Wyszynski1, Hasan Albacha‐Hejazi, Mohammed Aldirani, Moustafa Hammod, Hikmat Shkair, Ahmed Karam, Jehad Alashkar, Taura N. Holmes, Vittorio Perduca, Kimberly F. Doheny, Iain McIntosh, Terri H. Beaty, Joan E. Bailey‐Wilson
1Genetics Program, Department of Medicine, Boston University School of Medicine, Boston, MA, USA.

Tóm tắt

AbstractNon‐syndromic cleft lip with/without cleft palate (CL/P) is a common, usually non‐fatal birth defect of complex etiology. Several segregation analyses have demonstrated that genetic factors are important in the pathogenesis of CL/P, most likely through the interaction of several genes of modest effects. The aim of this study was to perform a genome‐wide linkage analysis to identify/search for candidate gene loci for CL/P. We conducted a genome‐wide search in two large, relatively isolated Syrian families, each one with a large number of cases with CL/P (18 in family 1 and 4 in family 2). A locus with a multipoint LOD score of 2.80 and a 2‐point non‐parametric MLS LOD of 3.0 was detected on 17p13.1. Other chromosomal regions with multipoint LOD scores ≥ 1.2 (P ≤ 0.01) included 3p21.2, 4q32.1, and 7q34. These data indicate the possible presence of several susceptibility loci for CL/P and identify a strong candidate locus for this common birth defect on chromosome 17p13. Published 2003 Wiley‐Liss, Inc.

Từ khóa


Tài liệu tham khảo

10.1034/j.1600-0544.2002.02203.x

Azaz B, 1967, Incidence of clefts in Israel, Cleft Palate J, 4, 227

10.1597/1545-1569(1993)030<0411:HPOCLA>2.3.CO;2

10.1597/1545-1569(1997)034<0447:TFIBMS>2.3.CO;2

10.1016/S1047-2797(01)00222-8

Bellus GA, 1995, Achondroplasia is defined by recurrent G380R mutations of FGFR3, Am J Hum Genet, 56, 368

10.1002/1096-8628(20000619)92:5<370::AID-AJMG17>3.0.CO;2-4

Borcbakan C, 1969, An analysis of 1,000 cases of cleft lip and palate in Turkey, Cleft Palate J, 6, 210

10.1016/0007-1226(93)90198-K

10.1086/302011

10.1597/1545-1569(2000)037<0033:GONCLA>2.3.CO;2

Carreno H, 1999, Association of non‐syndromic cleft lip and cleft palate with microsatellite markers located in 6p, Rev Med Chil, 127, 1189

10.1016/S0092-8674(00)81646-3

10.1016/S0065-2660(01)42034-7

10.1046/j.1365-2540.2001.00901.x

10.1093/oxfordjournals.aje.a009799

Curtis D, 1995, Model‐free linkage analysis using likelihoods, Am J Hum Genet, 57, 703

Curtis D, 1999, Genetic Analysis Workshop 11: Analysis of genetic and environmental factors in common diseases, S115

10.1159/000152518

DuffyDL.2002.Sib‐pair [computer program] documentation version 0.99.9.

10.1086/316915

10.1007/BF00280490

10.1002/(SICI)1096-8628(19991119)87:2<197::AID-AJMG15>3.0.CO;2-M

10.1086/301997

Habib Z, 1978, Factors determining occurrence of cleft lip and cleft palate, Surg Gynecol Obstet, 146, 105

10.1002/1096-8628(20010108)105:1<62::AID-AJMG1063>3.0.CO;2-C

Holmans P, 1993, Asympotic properties of affected‐sib‐pair linkage analysis, Am J Hum Genet, 52, 362

Hu DN, 1982, Genetics of cleft lip and cleft palate in China, Am J Hum Genet, 34, 999

10.1016/S1097-2765(00)00029-0

10.1093/oxfordjournals.aje.a117478

Iregbulem LM, 1982, The incidence of cleft lip and palate in Nigeria, Cleft Palate J, 9, 201

10.1007/BF00303246

10.1017/S0021932000016503

10.1086/301592

10.1038/9642

10.1097/00006534-199112000-00002

10.1038/ng1195-241

10.1597/1545-1569(1997)034<0001:SOTCGT>2.3.CO;2

10.1086/301956

10.1002/(SICI)1096-8628(19971219)73:3<337::AID-AJMG21>3.0.CO;2-J

10.1086/341944

10.1002/1096-8628(20010201)98:4<357::AID-AJMG1108>3.0.CO;2-F

10.1002/(SICI)1096-8628(19990903)86:1<71::AID-AJMG14>3.0.CO;2-Y

10.1597/1545-1569(2002)039<0093:GFTDAA>2.0.CO;2

10.1086/301741

Mossey PA, 2002, Cleft lip and palate. From origin to treatment, 127, 10.1093/oso/9780195139068.003.0012

Murray JC, 1995, Face facts: Genes, environment, and clefts, Am J Hum Genet, 57, 227

10.1086/301904

10.1177/08830738920070011011

10.1597/1545-1569(2003)040<0071:CGMSOC>2.0.CO;2

10.1038/35042049

10.1007/s004390051048

10.1046/j.1469-1809.2001.6560505.x

10.1597/1545-1569(2000)037<0191:AESOOC>2.3.CO;2

10.1002/(SICI)1098-2272(1998)15:1<1::AID-GEPI1>3.0.CO;2-B

Rao DC, 2000, Molecular genetics and human personality

Rao DC, 2001, Advances in Genetics

10.1159/000022889

Risch N, 1990, Linkage strategies for genetically complex traits. II. The power of affected relative pairs, Am J Hum Genet, 46, 229

Risch N, 1991, A note on multiple testing procedures in linkage analysis, Am J Hum Genet, 48, 1058

10.1086/302528

10.1002/(SICI)1096-9926(199901)59:1<39::AID-TERA9>3.0.CO;2-7

10.1111/j.1600-0528.1987.tb00504.x

Schaid DJ, 1993, Genotype relative risks: Methods for design and analysis of candidate‐gene association studies, Am J Hum Genet, 53, 1114

10.1093/hmg/8.10.1853

Shaw GM, 1996, Orofacial clefts, parental cigarette smoking, and transforming growth factor‐alpha gene variants, Am J Hum Genet, 58, 551

10.1002/(SICI)1096-8628(19981116)80:3<196::AID-AJMG2>3.0.CO;2-V

Sobel E, 1996, Descent graphs in pedigree analysis: Applications to haplotyping, location scores, and marker sharing statistics, Am J Hum Genet, 58, 1323

10.1038/ng740

Spielman RS, 1996, The TDT and other family‐based tests for linkage disequilibrium and association, Am J Hum Genet, 59, 983

Spielman RS, 1993, Transmission test for linkage disequilibrium: The insulin gene region and insulin dependent diabetes mellitus (IDDM), Am J Hum Genet, 52, 506

10.1016/0007-1226(90)90013-P

10.1136/jmg.28.5.325

10.1111/j.1469-1809.1978.tb00933.x

10.1597/1545-1569(1992)029<0015:CLAPIT>2.3.CO;2

Tal Y, 1974, Frequency of cleft lip and palate in northern Israel, Isr J Med Sci, 10, 515

10.1042/CS19990272

Teebi AS, 1997, Genetic disorders among Arab populations, 1

10.1016/S0958-1669(98)80135-3

10.1038/ng1094-108

10.1136/jmg.17.2.127

10.1597/1545-1569(2000)037<0357:LAOCRI>2.3.CO;2

10.1038/70501

Wyszynski DF, 2002, Cleft lip and palate. From origin to treatment, 10.1093/oso/9780195139068.001.0001

10.1002/(SICI)1096-8628(20000501)92:1<79::AID-AJMG14>3.0.CO;2-H

10.1597/1545-1569(1996)033<0406:GONOCR>2.3.CO;2

10.1159/000154397

10.1007/s004390050303

Young A, 1993, Genetic analysis system (GAS), version 2.0 [computer program]

10.1002/(SICI)1098-2272(1999)17:2<79::AID-GEPI1>3.0.CO;2-N

10.1002/(SICI)1096-8628(19970211)68:4<472::AID-AJMG20>3.0.CO;2-O