A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database

Data in Brief - Tập 12 - Trang 423-426 - 2017
Alex Orlek1,2, Hang Phan1,2, Anna E. Sheppard1,2, Michel Doumith3, Matthew J. Ellington3,1, Tim Peto1,2, Derrick W. Crook1,2, A. Sarah Walker1,2, Neil Woodford3,1, Muna F. Anjum4,1, Nicole Stoesser2
1NIHR Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, University of Oxford, Oxford, UK
2Nuffield Department of Medicine, University of Oxford, John Radcliffe Hospital, Oxford, UK
3Antimicrobial Resistance and Healthcare Associated Infections (AMRHAI) Reference Unit, National Infection Service, Public Health England, London, UK
4Department of Bacteriology, Animal and Plant Health Agency, Addlestone, UK

Tóm tắt

Từ khóa


Tài liệu tham khảo

Orlek, 2017, Ordering the mob: insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids, Plasmid, 91, 42, 10.1016/j.plasmid.2017.03.002

Orlek, 2017, Plasmid classification in an era of whole-genome sequencing: application in studies of antibiotic resistance epidemiology, Front. Microbiol., 10.3389/fmicb.2017.00182

Edwards, 2013, Beginner׳s guide to comparative bacterial genome analysis using next-generation sequence data, Microb. Inform. Exp., 3, 2, 10.1186/2042-5783-3-2

Zetner, 2017, Plasmid profiler: comparative analysis of plasmid content in WGS data, bioRxiv

Garcillán-Barcia, 2009, The diversity of conjugative relaxases and its application in plasmid classification, FEMS Microbiol. Rev., 33, 657, 10.1111/j.1574-6976.2009.00168.x

Chen, 2016, A comprehensive review and comparison of different computational methods for protein remote homology detection, Brief. Bioinform., 1

Cock, 2009, Biopython: freely available Python tools for computational molecular biology and bioinformatics, Bioinformatics, 25, 1422, 10.1093/bioinformatics/btp163

Thông tin
Thông tin xuất bản

Data in Brief

Tập 12

423-426

Thông tin tác giả