A century of Leptospira strain typing
Tóm tắt
Từ khóa
Tài liệu tham khảo
Ahmed, 2006, Multilocus sequence typing method for identification and genotypic classification of pathogenic Leptospira species, Ann. Clin. Microbiol. Antimicrob., 5, 28, 10.1186/1476-0711-5-28
Arzouni, 2002, Human infection caused by Leptospira fainei, Emerg. Infect. Dis., 8, 865, 10.3201/eid0808.010445
Baril, 1992, Scattering of the rRNA genes on the physical map of the circular chromosome of Leptospira interrogans serovar icterohaemorrhagiae, J. Bacteriol., 174, 7566, 10.1128/jb.174.23.7566-7571.1992
Boursaux-Eude, 1995, IS1500, an IS3-like element from Leptospira interrogans, Microbiology, 141, 2165, 10.1099/13500872-141-9-2165
Brenner, 1999, Further determination of DNA relatedness between serogroups and serovars in the family Leptospiraceae with a proposal for Leptospira alexanderi sp. nov. and four new Leptospira genomospecies, Int. J. Syst. Bacteriol., 49, 839, 10.1099/00207713-49-2-839
Brown, 1997, Differentiation of Leptospira species and serovars by PCR-restriction endonuclease analysis, arbitrarily primed PCR and low-stringency PCR, J. Med. Microbiol., 46, 173, 10.1099/00222615-46-2-173
Bulach, 2006, Genome reduction in Leptospira borgpetersenii reflects limited transmission potential, Proc. Natl. Acad. Sci. U.S.A., 103, 14560, 10.1073/pnas.0603979103
Cameron, 2008, Detection of pathogenic Leptospira bacteria in pinniped populations via PCR and identification of a source of transmission for zoonotic leptospirosis in the marine environment, J. Clin. Microbiol., 46, 1728, 10.1128/JCM.02022-07
Cerqueira, G.M., McBride, A.J.A., Picardeau, M., Ribeiro, S.G., Morel, V., Reis, M.G., Ko, A.I., Dellagostin, O.A., in press. Distribution of the Leptospiral immunoglobulin-like (Lig) genes in pathogenic Leptospira spp. and application of ligB to typing leptospiral isolates. J. Med. Microbiol., doi:10.1099/jmm.0.009175-0.
Ciceroni, 2002, Differentiation of leptospires of the serogroup Pomona by monoclonal antibodies, pulsed-field gel electrophoresis and arbitrarily primed polymerase chain reaction, Res. Microbiol., 153, 37, 10.1016/S0923-2508(01)01284-0
Collares-Pereira, 2000, Analysis of Leptospira isolates from mainland Portugal and the Azores islands, FEMS Microbiol. Lett., 185, 181, 10.1111/j.1574-6968.2000.tb09059.x
Corney, 1993, Rapid identification of some Leptospira isolates from cattle by random amplified polymorphic DNA fingerprinting, J. Clin. Microbiol., 31, 2927, 10.1128/jcm.31.11.2927-2932.1993
Corney, 2008, Leptospira weilii serovar Topaz, a new member of the Tarassovi serogroup isolated from a bovine source in Queensland, Australia, Int. J. Syst. Evol. Microbiol., 58, 2249, 10.1099/ijs.0.64884-0
De la Peña-Moctezuma, 1999, Comparative analysis of the LPS biosynthetic loci of the genetic subtypes of serovar Hardjo: Leptospira interrogans subtype Hardjoprajitno and Leptospira borgpetersenii subtype Hardjobovis, FEMS Microbiol. Lett., 177, 319, 10.1016/S0378-1097(99)00333-X
Doungchawee, 2007, Use of immunoblotting as an alternative method for serogrouping Leptospira, J. Med. Microbiol., 56, 587, 10.1099/jmm.0.47143-0
Ellis, 1988, Restriction endonuclease analysis of Leptospira interrogans serovar hardjo isolates from cattle, Res. Vet. Sci., 44, 375, 10.1016/S0034-5288(18)30874-9
Ellis, 1991, Restriction endonuclease analysis as a taxonomic tool in the study of pig isolates belonging to the Australis serogroup of Leptospira interrogans, J. Clin. Microbiol., 29, 957, 10.1128/jcm.29.5.957-961.1991
Faine, 1999
Galloway, 2008, Evaluation of a modified pulsed-field gel electrophoresis approach for the identification of Leptospira serovars, Am. J. Trop. Med. Hyg., 78, 628, 10.4269/ajtmh.2008.78.628
Gerritsen, 1995, Random amplified polymorphic DNA fingerprinting for rapid identification of leptospiras of serogroup Sejroe, J. Med. Microbiol., 42, 336, 10.1099/00222615-42-5-336
Gravekamp, 1993, Detection of seven species of pathogenic leptospires by PCR using two sets of primers, J. Gen. Microbiol., 139, 1691, 10.1099/00221287-139-8-1691
Grimont, 1986, Ribosomal ribonucleic acid gene restriction patterns as potential taxonomic tools, Ann. Inst. Pasteur, 137B, 165, 10.1016/S0769-2609(86)80105-3
Grissa, 2008, On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typing, Biochimie, 90, 660, 10.1016/j.biochi.2007.07.014
Haake, 2004, Molecular evolution and mosaicism of leptospiral outer membrane proteins involves horizontal DNA transfer, J. Bacteriol., 186, 2818, 10.1128/JB.186.9.2818-2828.2004
Hartskeerl, 2004, Classification of leptospira from the eyes of horses suffering from recurrent uveitis, J. Vet. Med. B Infect. Dis. Vet. Public Health, 51, 110, 10.1111/j.1439-0450.2004.00740.x
Heinemann, 2000, Detection and differentiation of Leptospira spp. serovars in bovine semen by polymerase chain reaction and restriction fragment length polymorphism, Vet. Microbiol., 73, 261, 10.1016/S0378-1135(00)00150-4
Herrmann, 1991, Genome conservation in isolates of Leptospira interrogans, J. Bacteriol., 173, 7582, 10.1128/jb.173.23.7582-7588.1991
Herrmann, 1992, Pulsed-field gel electrophoresis of NotI digests of leptospiral DNA: a new rapid method of serovar identification, J. Clin. Microbiol., 30, 1696, 10.1128/jcm.30.7.1696-1702.1992
Herrmann, 1994, A new serovar in the Grippotyphosa serogroup comprising leptospiral isolates from different regions, Int. J. Syst. Bacteriol., 44, 362, 10.1099/00207713-44-2-362
Inada, 1916, The etiology, mode of infection and specific therapy of Weil's disease (Spirochaeta icterohaemorrhagiae), J. Exp. Med., 23, 377, 10.1084/jem.23.3.377
International Committee on Systematics of Prokaryotes, 2008, Subcommittee on the taxonomy of Leptospiraceae, Int. J. Syst. Evol. Microbiol., 58, 1049
Johnson, 1964, Differentiation of pathogenic and saprophytic leptospires with 8-azaguanine, J. Bacteriol., 88, 1618, 10.1128/jb.88.6.1618-1623.1964
Kawabata, 2001, flaB-polymerase chain reaction (flaB-PCR) and its restriction fragment length polymorphism (RFLP) analysis are an efficient tool for detection and identification of Leptospira spp., Microbiol. Immunol., 45, 491, 10.1111/j.1348-0421.2001.tb02649.x
Kmety, 1993
Kositanont, 2007, Assessment of Southern blot ribotyping for differentiation of Leptospira strains isolated from field rats, J. Microbiol. Methods, 69, 288, 10.1016/j.mimet.2007.01.012
La Scola, 2006, Partial rpoB gene sequencing for identification of Leptospira species, FEMS Microbiol. Lett., 263, 142, 10.1111/j.1574-6968.2006.00377.x
Letocart, 1997, Rapid identification of pathogenic Leptospira species (Leptospira interrogans, L. borgpetersenii, and L. kirschneri) with species-specific DNA probes produced by arbitrarily primed PCR, J. Clin. Microbiol., 35, 248, 10.1128/jcm.35.1.248-253.1997
Levett, 2003, Usefulness of serologic analysis as a predictor of the infecting serovar in patients with severe leptospirosis, Clin. Infect. Dis., 36, 447, 10.1086/346208
Levett, 2005, Reclassification of Leptospira parva Hovind-Hougen et al., 1982 as Turneriella parva gen. nov., comb. nov., Int. J. Syst. Evol. Microbiol., 55, 1497, 10.1099/ijs.0.63088-0
Levett, 2006, Leptospira broomii sp. nov., isolated from humans with leptospirosis, Int. J. Syst. Evol. Microbiol., 56, 671, 10.1099/ijs.0.63783-0
Majed, 2005, Identification of variable-number tandem-repeat loci in Leptospira interrogans sensu stricto, J. Clin. Microbiol., 43, 539, 10.1128/JCM.43.2.539-545.2005
Martin, 1918, Sero-diagnostic de la spirochaetose icterohaemorrhagique, Bull. Mem. Soc. Med. Hop. Paris, 42, 672
Matthias, 2008, Human leptospirosis caused by a new, antigenically unique leptospira associated with a rattus species reservoir in the peruvian Amazon, PLoS Negl. Trop. Dis., 2, e213, 10.1371/journal.pntd.0000213
McBride, 2009, Genetic diversity of the Leptospiral immunoglobulin-like (Lig) genes in pathogenic Leptospira spp., Infect. Genet. Evol., 9, 196, 10.1016/j.meegid.2008.10.012
Merien, 2005, A rapid and quantitative method for the detection of Leptospira species in human leptospirosis, FEMS Microbiol. Lett., 249, 139, 10.1016/j.femsle.2005.06.011
Morey, 2006, Species-specific identification of Leptospiraceae by 16S rRNA gene sequencing, J. Clin. Microbiol., 44, 3510, 10.1128/JCM.00670-06
Nascimento, 2004, Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis, J. Bacteriol., 186, 2164, 10.1128/JB.186.7.2164-2172.2004
Natarajaseenivasan, 2005, Phylogenetic relatedness among leptospiral strains belonging to same serovar recovered from patients with different clinical syndromes, Infect. Genet. Evol., 5, 185, 10.1016/j.meegid.2004.10.001
Paster, 1991, Phylogenetic analysis of the spirochetes, J. Bacteriol., 173, 6101, 10.1128/jb.173.19.6101-6109.1991
Pavan, 2008, Multiple-locus variable-number tandem repeat analysis (MLVA) of Leptospira interrogans serovar Pomona from Argentina reveals four new genotypes, Comp. Immunol. Microbiol. Infect. Dis., 31, 37, 10.1016/j.cimid.2007.03.004
Perolat, 1993, Diversity of ribosomal DNA fingerprints of Leptospira serovars provides a database for subtyping and species assignation, Res. Microbiol., 144, 5, 10.1016/0923-2508(93)90210-S
Perolat, 1998, Leptospira fainei sp. nov., isolated from pigs in Australia, Int. J. Syst. Bacteriol., 48, 851, 10.1099/00207713-48-3-851
Petersen, 2001, First isolation of Leptospira fainei serovar Hurstbridge from two human patients with Weil's syndrome, J. Med. Microbiol., 50, 96, 10.1099/0022-1317-50-1-96
Picardeau, 2008, Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis, PLoS ONE, 3, e1607, 10.1371/journal.pone.0001607
Postic, 2000, Interest of partial 16S rDNA gene sequences to resolve heterogeneities between Leptospira collections: application to L. meyeri, Res. Microbiol., 151, 333, 10.1016/S0923-2508(00)00156-X
Ralph, 1993, Leptospira species categorized by arbitrarily primed polymerase chain reaction (PCR) and by mapped restriction polymorphisms in PCR-amplified rRNA genes, J. Bacteriol., 175, 973, 10.1128/jb.175.4.973-981.1993
Ralph, 1994, Phylogenetic evidence for horizontal transfer of an intervening sequence between species in a spirochete genus, J. Bacteriol., 176, 5982, 10.1128/jb.176.19.5982-5987.1994
Ramadass, 1992, Genetic characterization of pathogenic Leptospira species by DNA hybridization, Int. J. Syst. Bacteriol., 42, 215, 10.1099/00207713-42-2-215
Ramadass, 1997, Characterization of leptospiral serovars by randomly amplified polymorphic DNA fingerprinting, Int. J. Syst. Bacteriol., 47, 575, 10.1099/00207713-47-2-575
Ramadass, 2002, Arbitrarily primed PCR—a rapid and simple method for typing of leptospiral serovars, Indian J. Med. Microbiol., 20, 25
Ren, 2003, Unique and physiological and pathogenic features of Leptospira interrogans revealed by whole genome sequencing, Nature, 422, 888, 10.1038/nature01597
Roy, 2004, A 22-mer primer enhances discriminatory power of AP-PCR fingerprinting technique in characterization of leptospires, Trop. Med. Int. Health, 9, 1203, 10.1111/j.1365-3156.2004.01322.x
Roy, 2005, A clone of Leptospira interrogans sensu stricto is the major cause of leptospirosis in the archipelago of Andaman and Nicobar Islands, India, Lett. Appl. Microbiol., 41, 179, 10.1111/j.1472-765X.2005.01740.x
Salaün, 2006, Application of multilocus variable-number tandem-repeat analysis for molecular typing of the agent of leptospirosis, J. Clin. Microbiol., 44, 3954, 10.1128/JCM.00336-06
Savio, 1994, Detection and identification of Leptospira interrogans serovars by PCR coupled with restriction endonuclease analysis of amplified DNA, J. Clin. Microbiol., 32, 935, 10.1128/jcm.32.4.935-941.1994
Schmid, 1986, Newly recognized Leptospira species (“Leptospira inadai” serovar lyme) isolated from human skin, J. Clin. Microbiol., 24, 484, 10.1128/jcm.24.3.484-486.1986
Segura, 2005, Clinical spectrum of pulmonary involvement in leptospirosis in a region of endemicity, with quantification of leptospiral burden, Clin. Infect. Dis., 40, 343, 10.1086/427110
Siguier, 2006, ISfinder: the reference centre for bacterial insertion sequences, Nucleic Acids Res., 34, D32, 10.1093/nar/gkj014
Slack, 2005, Development of a Multiple-Locus Variable Number of Tandem Repeat Analysis (MLVA) for Leptospira interrogans and its application to Leptospira interrogans serovar Australis isolates from Far North Queensland, Australia, Ann. Clin. Microbiol. Antimicrob., 4, 10, 10.1186/1476-0711-4-10
Slack, 2006, Identification of pathogenic Leptospira species by conventional or real-time PCR and sequencing of the DNA gyrase subunit B encoding gene, BMC Microbiol., 6, 95, 10.1186/1471-2180-6-95
Slack, 2007, Epidemiology of Leptospira weilii serovar Topaz infections in Australia, Commun. Dis. Intell., 31, 216
Slack, 2008, Leptospira wolffii sp. nov., isolated from a human with suspected leptospirosis in Thailand, Int. J. Syst. Evol. Microbiol., 58, 2305, 10.1099/ijs.0.64947-0
Slack, 2009, Leptospira kmetyi sp. nov., isolated from an environmental source in Malaysia, Int. J. Syst. Evol. Microbiol., 59, 705, 10.1099/ijs.0.002766-0
Steinen, 1992, Muskrats as carriers of pathogenic leptospires in The Netherlands, Anton. Van Leeuw., 61, 43, 10.1007/BF00572121
Stimson, 1907, Note on an organism found in yellow-fever tissue, Public Health Reports (Washington), 22, 541, 10.2307/4559008
Tenover, 1995, Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing, J. Clin. Microbiol., 33, 2233, 10.1128/jcm.33.9.2233-2239.1995
Terpstra, 1985, The classification of Sejroe group serovars of Leptospira interrogans with monoclonal antibodies, Zentralbl Bakteriol Mikrobiol Hygiene, 259, 498
Thaipadungpanit, 2007, A dominant clone of Leptospira interrogans associated with an outbreak of human leptospirosis in Thailand, PLoS Negl. Trop. Dis. 1, e56, 10.1371/journal.pntd.0000056
Thiermann, 1985, New method for classification of leptospiral isolates belonging to serogroup pomona by restriction endonuclease analysis: serovar kennewicki, J. Clin. Microbiol., 21, 585, 10.1128/jcm.21.4.585-587.1985
Touchon, 2007, Causes of insertion sequences abundance in prokaryotic genomes, Mol. Biol. Evol., 24, 969, 10.1093/molbev/msm014
Truccolo, 2001, Following the course of human leptospirosis: evidence of a critical threshold for the vital prognosis using a quantitative PCR assay, FEMS Microbiol. Lett., 204, 17, 10.1111/j.1574-6968.2001.tb10904.x
Valverde Mde, 2008, Arenal, a new Leptospira serovar of serogroup Javanica, isolated from a patient in Costa Rica, Infect. Genet. Evol., 8, 529, 10.1016/j.meegid.2008.02.008
Venkatesha, 2001, Identification of leptospiral isolates by bacterial restriction endonuclease analysis (Brenda), Indian J. Med. Microbiol., 19, 26, 10.1016/S0255-0857(21)03368-5
Victoria, 2008, Conservation of the S10-spc-alpha locus within otherwise highly plastic genomes provides phylogenetic insight into the genus Leptospira, PLoS ONE, 3, e2752, 10.1371/journal.pone.0002752
Vijayachari, 2004, Use of fluorescent amplified fragment length polymorphism for molecular epidemiology of leptospirosis in India, J. Clin. Microbiol., 42, 3575, 10.1128/JCM.42.8.3575-3580.2004
Welsh, 1990, Fingerprinting genomes using PCR with arbitrary primers, Nucleic Acids Res., 18, 7213, 10.1093/nar/18.24.7213
World Health Organization, 1999, Leptospirosis worldwide, Weekly Epidemiol. Rec., 74, 237
World Health Organization, 2003
Williams, 1990, DNA polymorphisms amplified by arbitrary primers are useful as genetic markers, Nucleic Acids Res., 18, 6531, 10.1093/nar/18.22.6531
Wolbach, 1914, Notes on a filterable spirochete from fresh water, Spirocheta biflexa (new species), J. Med. Res., 30, 23
Woo, 1997, Comparison of two PCR methods for rapid identification of Leptospira genospecies interrogans, FEMS Microbiol. Lett., 155, 169, 10.1111/j.1574-6968.1997.tb13874.x
Woodward, 1993, Differentiation of leptospira serovars by the polymerase chain reaction and restriction fragment length polymorphism, Vet. Rec., 132, 325, 10.1136/vr.132.13.325
Yasuda, 1987, Deoxyribonucleic acid relatedness between serogroups and serovars in the family Leptospiraceae with proposals for seven new Leptospira species, Int. J. Syst. Bacteriol., 37, 407, 10.1099/00207713-37-4-407
Zuerner, 1990, Nucleic acid probe characterizes Leptospira interrogans serovars by restriction fragment length polymorphisms, Vet. Microbiol., 24, 355, 10.1016/0378-1135(90)90183-V
Zuerner, 1993, Restriction fragment length polymorphisms distinguish Leptospira borgpetersenii serovar hardjo type hardjo-bovis isolates from different geographical locations, J. Clin. Microbiol., 31, 578, 10.1128/jcm.31.3.578-583.1993
Zuerner, 1993, Comparison of genetic maps for two Leptospira interrogans serovars provides evidence for two chromosomes and intraspecies heterogeneity, J. Bacteriol., 175, 5445, 10.1128/jb.175.17.5445-5451.1993
Zuerner, 1993, Construction and comparison of genetic maps for two Leptospira interrogans serovars provides evidence for two chromosomes and intraspecies heterogeneity in genomic organization, J. Bacteriol., 175, 5445, 10.1128/jb.175.17.5445-5451.1993
Zuerner, 1994, Nucleotide sequence analysis of IS1533 from Leptospira borgpetersenii: identification and expression of two IS-encoded proteins, Plasmid, 31, 1, 10.1006/plas.1994.1001
Zuerner, 1995, IS1533-based PCR assay for identification of Leptospira interrogans sensu lato serovars, J. Clin. Microbiol., 33, 3284, 10.1128/jcm.33.12.3284-3289.1995
Zuerner, 1997, Differentiation of Leptospira interrogans isolates by IS1500 hybridization and PCR assays, J. Clin. Microbiol., 35, 2612, 10.1128/jcm.35.10.2612-2617.1997
Zuerner, 2002, Analysis of a Leptospira interrogans locus containing DNA replication genes and a new IS, IS1502, FEMS Microbiol. Lett., 215, 175, 10.1111/j.1574-6968.2002.tb11388.x