A TRPV2 interactome-based signature for prognosis in glioblastoma patients

Tominaga, 2016, Lack of TRPV2 impairs thermogenesis in mouse brown adipose tissue, EMBO Rep, 17, 383, 10.15252/embr.201540819

Katanosaka, Iwasaki, Ujihara, Takatsu, Nishitsuji, Kanagawa, Sudo, Toda, Katanosaka, Mohri, Naruse. TRPV2 is critical for the maintenance of cardiac structure and function in mice. Nat Commun. 2014; p. 5. https://doi.org/10.1038/ncomms4932.

Niggli, 2015, Dystrophic cardiomyopathy: role of TRPV2 channels in stretch-induced cell damage, Cardiovasc Res, 106, 153, 10.1093/cvr/cvv021

Gaudet, 2013, What do we know about the transient receptor potential vanilloid 2 (TRPV2) ion channel?, FEBS J, 280, 5471, 10.1111/febs.12302

Perálvarez-Marín, 2014, Dissecting domain-specific evolutionary pressure profiles of transient receptor potential vanilloid subfamily members 1 to 4, PLoS One, 9, e110715, 10.1371/journal.pone.0110715

Turner, 2004, A TRPV2-PKA signaling module for transduction of physical stimuli in mast cells, J Exp Med, 200, 137, 10.1084/jem.20032082

Moiseenkova-Bell, 2015, Nerve Growth Factor Regulates Transient Receptor Potential Vanilloid 2 via Extracellular Signal-Regulated Kinase Signaling To Enhance Neurite Outgrowth in Developing Neurons, Mol Cell Biol, 35, 4238, 10.1128/MCB.00549-15

Oliver, 2000, Guilt-by-association goes global, Nature, 403, 601, 10.1038/35001165

Tominaga, 2010, TRPV2 enhances axon outgrowth through its activation by membrane stretch in developing sensory and motor neurons, J Neurosci, 30, 4601, 10.1523/JNEUROSCI.5830-09.2010

Lin, 2007, False positive reduction in protein-protein interaction predictions using gene ontology annotations, BMC Bioinformatics, 8, 262, 10.1186/1471-2105-8-262

Aoki, 2017, Systematic protein-protein interaction mapping for clinically relevant human GPCRs, Mol Syst Biol, 13, 918, 10.15252/msb.20167430

Chibon, 2013, Cancer gene expression signatures - The rise and fall?, Eur J Can, 49, 2000, 10.1016/j.ejca.2013.02.021

Ferrer-Montiel, 2004, Regulated exocytosis contributes to protein kinase C potentiation of vanilloid receptor activity, J Biol Chem, 279, 25665, 10.1074/jbc.M311515200

te Heesen, 1998, A genetic system based on split-ubiquitin for the analysis of interactions between membrane proteins, Proc Natl Acad Sci U S A, 95, 5187, 10.1073/pnas.95.9.5187

Jessulat, 2013, Mapping the functional yeast ABC transporter interactome, Nat Chem Biol, 9, 565, 10.1038/nchembio.1293

Furlong, 2015, DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes, Database (Oxford), 2015, bav028, 10.1093/database/bav028

Van Dyck, 2016, DNA repair mechanisms and their clinical impact in glioblastoma, Mutat Res Rev Mutat Res, 769, 19, 10.1016/j.mrrev.2016.05.005

Onder, 2013, PRIMOS: an integrated database of reassessed protein-protein interactions providing web-based access to in silico validation of experimentally derived data, Assay Drug Dev Technol, 11, 333, 10.1089/adt.2013.506

Camci, 2015, Gene expressions of TRP channels in glioblastoma multiforme and relation with survival, Tumour Biol, 36, 9209, 10.1007/s13277-015-3577-x

Santoni, 2012, The transient receptor potential vanilloid-2 cation channel impairs glioblastoma stem-like cell proliferation and promotes differentiation, Int J Cancer, 131, E1067, 10.1002/ijc.27588

Santoni, 2013, Triggering of the TRPV2 channel by cannabidiol sensitizes glioblastoma cells to cytotoxic chemotherapeutic agents, Carcinogenesis, 34, 48, 10.1093/carcin/bgs328

Cavenee, 2007, Malignant astrocytic glioma: genetics, biology, and paths to treatment, Genes Dev, 21, 2683, 10.1101/gad.1596707

Sarkar, 2011, A clinicopathological and molecular analysis of glioblastoma multiforme with long-term survival, J Clin Neurosci, 18, 66, 10.1016/j.jocn.2010.04.050

Zhou, 2013, Expression profiling of ion channel genes predicts clinical outcome in breast cancer, Mol Cancer, 12, 106, 10.1186/1476-4598-12-106

Zhang, 2016, A three ion channel genes-based signature predicts prognosis of primary glioblastoma patients and reveals a chemotherapy sensitive subtype, Oncotarget, 7, 74895, 10.18632/oncotarget.12462

Perálvarez-Marín, 2015, Molecular and topological membrane folding determinants of transient receptor potential vanilloid 2 channel, Biochem Biophys Res Commun, 462, 221, 10.1016/j.bbrc.2015.04.120

Stagljar, 2010, Detecting interactions with membrane proteins using a membrane two-hybrid assay in yeast, Nat Protoc, 5, 1281, 10.1038/nprot.2010.83

Ideker, 2003, Cytoscape: A software Environment for integrated models of biomolecular interaction networks, Genome Res, 13, 2498, 10.1101/gr.1239303

Bader, 2010, GeneMANIA cytoscape plugin: Fast gene function predictions on the desktop, Bioinformatics, 26, 2927, 10.1093/bioinformatics/btq562

Furlong, 2016, DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases, Bioinformatics, 32, 2236, 10.1093/bioinformatics/btw214

Ellison, 2016, The 2016 World Health Organization Classification of Tumors of the Central Nervous System: a summary, Acta Neuropathol, 131, 803, 10.1007/s00401-016-1545-1

Huber, 2004, Bioconductor: Open software development for computational biology and bioinformatics, Genome Biol, 5, R80, 10.1186/gb-2004-5-10-r80

Parmigiani, Garrett, Irizarry, Zeger. The Analysis of Gene Expression Data: Methods and Software. Statistics for biology and health. 2003; pp. 1–45. https://doi.org/10.1007/0-387-21679-0_1.

Team RDC. R: A Language and Environment for Statistical Computing. 2016. Available from www.r-project.org.

Smyth, 2015, limma powers differential expression analyses for RNA-sequencing and microarray studies, Nucleic Acids Res, 43, e47, 10.1093/nar/gkv007

Therneau. A Package for Survival Analysis in. S. 2015. Available from https://cran.r-project.org/package=survival.

Therneau, Grambsch. Modeling Survival Data: Extending the Cox Model. Statistics for Biology and Health. 2000.