A Proteomics Dissection of Arabidopsis thaliana Vacuoles Isolated from Cell Culture
Tài liệu tham khảo
De, 2000, 79
Marty, 1999, Plant vacuoles., Plant Cell, 11, 587, 10.1105/tpc.11.4.587
Paris, 1996, Plant cells contain two functionally distinct vacuolar compartments., Cell, 85, 563, 10.1016/S0092-8674(00)81256-8
Vitale, 1999, What do proteins need to reach different vacuoles?, Trends Plant Sci., 4, 149, 10.1016/S1360-1385(99)01389-8
Jauh, 1998, δ-Tonoplast intrinsic protein defines unique plant vacuole functions., Proc. Natl. Acad. Sci. U. S. A., 95, 12995, 10.1073/pnas.95.22.12995
Jauh, 1999, Tonoplast intrinsic protein isoforms as markers for vacuolar functions., Plant Cell, 11, 1867, 10.1105/tpc.11.10.1867
Phillipson, 2001, Secretory bulk flow of soluble proteins is efficient and COPII dependent., Plant Cell, 13, 2005, 10.1105/TPC.010110
Rojo, 2003, A unique mechanism for protein processing and degradation in Arabidopsis thaliana., Proc. Natl. Acad. Sci. U. S. A., 100, 7389, 10.1073/pnas.1230987100
Neumann, 2003, Protein transport in plant cells: in and out of the Golgi., Ann. Bot., 92, 167, 10.1093/aob/mcg134
Vitale, 2005, Sorting of proteins to storage vacuoles: how many mechanisms?, Trends Plant Sci., 10, 316, 10.1016/j.tplants.2005.05.001
Pimpl, 2000, In situ localization and in vitro induction of plant COPI-coated vesicles., Plant Cell, 12, 2219, 10.1105/tpc.12.11.2219
DaSilva, 2004, Endoplasmic reticulum export sites and Golgi bodies behave as single mobile secretory units in plant cells., Plant Cell, 16, 1753, 10.1105/tpc.022673
Park, 2004, Identification of the protein storage vacuole and protein targeting to the vacuole in leaf cells of three plant species., Plant Physiol., 134, 625, 10.1104/pp.103.030635
Pimpl, 2003, The GTPase ARF1p controls the sequence-specific vacuolar sorting route to the lytic vacuole., Plant Cell, 15, 1242, 10.1105/tpc.010140
Rojo, 2003, The AtC-VPS protein complex is localized to the tonoplast and the prevacuolar compartment in Arabidopsis., Mol. Biol. Cell, 14, 361, 10.1091/mbc.e02-08-0509
Huang, 2002, Autophagy in yeast: a review of the molecular machinery., Cell Struct. Funct., 27, 409, 10.1247/csf.27.409
Maeshima, 2001, Tonoplast transporters: organization and function., Ann. Rev. Plant Physiol. Plant Mol. Biol., 52, 469, 10.1146/annurev.arplant.52.1.469
Sze, 1999, Energization of plant cell membranes by H+-pumping ATPases. Regulation and biosynthesis., Plant Cell, 11, 677
Kluge, 2003, New insight into the structure and regulation of the plant vacuolar H+-ATPase., J. Bioenerg. Biomembr., 35, 377, 10.1023/A:1025737117382
Rea, 1993, Vacuolar H+-translocating pyrophosphatase., Annu. Rev. Plant Physiol. Plant Mol. Biol., 44, 157, 10.1146/annurev.pp.44.060193.001105
Li, 2005, Arabidopsis H+-PPase AVP1 regulates auxin-mediated organ development., Science, 310, 121, 10.1126/science.1115711
Blumwald, 2000, Sodium transport and salt tolerance in plants., Curr. Opin. Cell Biol., 12, 431, 10.1016/S0955-0674(00)00112-5
Apse, 1999, Salt tolerance conferred by overexpression of a vacuolar Na+/H+ antiport in Arabidopsis., Science, 285, 1256, 10.1126/science.285.5431.1256
Yamaguchi, 2005, Vacuolar Na+/H+ antiporter cation selectivity is regulated by calmodulin from within the vacuole in a Ca2+- and pH-dependent manner., Proc. Natl. Acad. Sci. U. S. A., 102, 16107, 10.1073/pnas.0504437102
Hirschi, 2004, The calcium conundrum. Both versatile nutrient and specific signal., Plant Physiol., 136, 2438, 10.1104/pp.104.046490
Hirschi, 1996, CAX1, an H+/Ca2+ antiporter from Arabidopsis., Proc. Natl. Acad. Sci. U. S. A., 93, 8782, 10.1073/pnas.93.16.8782
Ueoka-Nakanishi, 1999, Properties and molecular cloning of Ca2+/H+ antiporter in the vacuolar membrane of mung bean., Eur. J. Biochem., 262, 417, 10.1046/j.1432-1327.1999.00377.x
Cheng, 2003, The Arabidopsis cax1 mutant exhibits impaired ion homeostasis, development, and hormonal responses and reveals interplay among vacuolar transporters., Plant Cell, 15, 347, 10.1105/tpc.007385
Geisler, 2000, The ACA4 gene of Arabidopsis encodes a vacuolar membrane calcium pump that improves salt tolerance in yeast., Plant Physiol., 124, 1814, 10.1104/pp.124.4.1814
Baxter, 2003, Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice., Plant Physiol., 132, 618, 10.1104/pp.103.021923
Shaul, 1999, Cloning and characterization of a novel Mg2+/H+ exchanger., EMBO J., 18, 3973, 10.1093/emboj/18.14.3973
Kobae, 2004, Zinc transporter of Arabidopsis thaliana AtMTP1 is localized to vacuolar membranes and implicated in zinc homeostasis., Plant Cell Physiol., 45, 1749, 10.1093/pcp/pci015
Desbrosses-Fonrouge, 2005, (2005) Arabidopsis thaliana MTP1 is a Zn transporter in the vacuolar membrane which mediates Zn detoxification and drives leaf Zn accumulation., FEBS Lett., 579, 4165, 10.1016/j.febslet.2005.06.046
Kramer, 2005, MTP1 mops up excess zinc in Arabidopsis cells., Trends Plant Sci., 10, 313, 10.1016/j.tplants.2005.05.008
Drager, 2004, Two genes encoding Arabidopsis halleri MTP1 metal transport proteins co-segregate with zinc tolerance and account for high MTP1 transcript levels., Plant J., 39, 425, 10.1111/j.1365-313X.2004.02143.x
Thomine, 2003, AtNRAMP3, a multispecific vacuolar metal transporter involved in plant responses to iron deficiency., Plant J., 34, 685, 10.1046/j.1365-313X.2003.01760.x
Lanquar, 2005, Mobilization of vacuolar iron by AtNRAMP3 and AtNRAMP4 is essential for seed germination on low iron., EMBO J., 24, 4041, 10.1038/sj.emboj.7600864
Liu, 2001, Enhanced multispecificity of Arabidopsis vacuolar multidrug resistance-associated protein-type ATP-binding cassette transporter, AtMRP2., J. Biol. Chem., 276, 8648, 10.1074/jbc.M009690200
Geisler, 2004, Arabidopsis immunophilin-like TWD1 functionally interacts with vacuolar ABC transporters., Mol. Biol. Cell, 15, 3393, 10.1091/mbc.e03-11-0831
Shimaoka, 2004, Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana., Plant Cell Physiol., 45, 672, 10.1093/pcp/pch099
Szponarski, 2004, Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography., Proteomics, 4, 397, 10.1002/pmic.200300607
Carter, 2004, The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins., Plant Cell, 16, 3285, 10.1105/tpc.104.027078
Frangne, 2002, Flavone glucoside uptake into barley mesophyll and Arabidopsis cell culture vacuoles. Energization occurs by H+-antiport and ATP-binding cassette-type mechanisms., Plant Physiol., 128, 726, 10.1104/pp.010590
Boller, 1979, Hydrolytic enzymes in the central vacuole of plant cells., Plant Physiol., 63, 1123, 10.1104/pp.63.6.1123
Bolter, 1999, A rectifying ATP-regulated solute channel in the chloroplastic outer envelope from pea., EMBO J., 18, 5505, 10.1093/emboj/18.20.5505
Jansch, 1998, Unique composition of the preprotein translocase of the outer mitochondrial membrane from plants., J. Biol. Chem., 273, 17251, 10.1074/jbc.273.27.17251
Morsomme, 1998, Single point mutations distributed in 10 soluble and membrane regions of the Nicotiana plumbaginifolia plasma membrane PMA2 H+-ATPase activate the enzyme and modify the structure of the C-terminal region., J. Biol. Chem., 273, 34837, 10.1074/jbc.273.52.34837
Napier, 1992, Immunological evidence that plants use both HDEL and KDEL for targeting proteins to the endoplasmic reticulum., J. Cell Sci., 102, 261, 10.1242/jcs.102.2.261
Baluska, 1999, Maize calreticulin localizes preferentially to plasmodesmata in root apex., Plant J., 19, 481, 10.1046/j.1365-313X.1999.00530.x
Gerbeau, 1999, Aquaporin Nt-TIPa can account for the high permeability of tobacco cell vacuolar membrane to small neutral solutes., Plant J., 18, 577, 10.1046/j.1365-313x.1999.00481.x
da Silva Conceicao, 1997, The syntaxin homolog AtPEP12p resides on a late post-Golgi compartment in plants., Plant Cell, 9, 571
Schwacke, 2003, ARAMEMNON, a novel database for Arabidopsis integral membrane proteins., Plant Physiol., 131, 16, 10.1104/pp.011577
Huala, 2001, The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant., Nucleic Acids Res., 29, 102, 10.1093/nar/29.1.102
Nakai, 1999, PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization., Trends Biochem. Sci., 24, 34, 10.1016/S0968-0004(98)01336-X
Karimi, 2005, Modular cloning in plant cells., Trends Plant Sci., 10, 103, 10.1016/j.tplants.2005.01.008
Lavy, 2002, A cell-specific, prenylation-independent mechanism regulates targeting of type II RACs., Plant Cell, 14, 2431, 10.1105/tpc.005561
Lazzaroni, 2002, The Tol proteins of Escherichia coli and their involvement in the translocation of group A colicins., Biochimie (Paris), 84, 391, 10.1016/S0300-9084(02)01419-0
Kiyosue, 1993, Characterization of two cDNAs (ERD11 and ERD13) for dehydration-inducible genes that encode putative glutathione S-transferases in Arabidopsis thaliana L., FEBS Lett., 335, 189, 10.1016/0014-5793(93)80727-C
Taketani, 1998, Molecular characterization of a newly identified heme-binding protein induced during differentiation of urine erythroleukemia cells., J. Biol. Chem., 273, 31388, 10.1074/jbc.273.47.31388
Ishihama, 2005, Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein., Mol. Cell. Proteomics, 4, 1265, 10.1074/mcp.M500061-MCP200
Ueda, 2006, AtVAM3 is required for normal specification of idioblasts, myrosin cells., Plant Cell Physiol., 47, 164, 10.1093/pcp/pci232
Sze, 2002, A simple nomenclature for a complex proton pump: VHA genes encode the vacuolar H+-ATPase., Trends Plant Sci., 7, 157, 10.1016/S1360-1385(02)02240-9
Sarafian, 1992, Molecular cloning and sequence of cDNA encoding the pyrophosphate-energized vacuolar membrane proton pump of Arabidopsis thaliana., Proc. Natl. Acad. Sci. U. S. A., 89, 1775, 10.1073/pnas.89.5.1775
Theodoulou, 2000, Plant ABC transporters., Biochim. Biophys. Acta, 1465, 79, 10.1016/S0005-2736(00)00132-2
Sanchez Fernandez, 2001, The Arabidopsis thaliana ABC protein superfamily, a complete inventory., J. Biol. Chem., 276, 30231, 10.1074/jbc.M103104200
Garcia, 2004, Inventory and comparative analysis of rice and Arabidopsis ATP-binding cassette (ABC) systems., J. Mol. Biol., 343, 249, 10.1016/j.jmb.2004.07.093
Kolukisaoglu, 2002, Family business: the multidrug-resistance related protein (MRP) ABC transporter genes in Arabidopsis thaliana., Planta, 216, 107, 10.1007/s00425-002-0890-6
Klein, 2004, Disruption of AtMRP4, a guard cell plasma membrane ABCC-type ABC transporter, leads to deregulation of stomatal opening and increased drought susceptibility., Plant J., 39, 219, 10.1111/j.1365-313X.2004.02125.x
Dunkley, 2006, Mapping the Arabidopsis organelle proteome., Proc. Natl. Acad. Sci. U. S. A., 103, 6518, 10.1073/pnas.0506958103
Saier, 2001, Phylogeny of multidrug transporters., Semin. Cell Dev. Biol., 12, 205, 10.1006/scdb.2000.0246
Diener, 2001, Arabidopsis ALF5, a multidrug efflux transporter gene family member, confers resistance to toxins., Plant Cell, 13, 1625, 10.1105/TPC.010035
Curie, 2001, Maize yellow stripe1 encodes a membrane protein directly involved in Fe(III) uptake., Nature, 409, 346, 10.1038/35053080
Schaaf, 2004, ZmYS1 functions as a proton-coupled symporter for phytosiderophore- and nicotianamine-chelated metals., J. Biol. Chem., 279, 9091, 10.1074/jbc.M311799200
Gaxiola, 1999, The Arabidopsis thaliana proton transporters, AtNhx1 and Avp1, can function in cation detoxification in yeast., Proc. Natl. Acad. Sci. U. S. A., 96, 1480, 10.1073/pnas.96.4.1480
Maser, 2001, Phylogenetic relationships within cation transporter families of Arabidopsis., Plant Physiol., 126, 1646, 10.1104/pp.126.4.1646
Vicente-Agullo, 2004, Potassium carrier TRH1 is required for auxin transport in Arabidopsis roots., Plant J., 40, 523, 10.1111/j.1365-313X.2004.02230.x
Su, 2004, Molecular and functional characterization of a family of amino acid transporters from Arabidopsis., Plant Physiol., 136, 3104, 10.1104/pp.104.045278
Davies, 2000, Transmembrane molecular pump activity of Niemann-Pick C1 protein., Science, 290, 2295, 10.1126/science.290.5500.2295
Amigo, 2002, Relevance of Niemann-Pick type C1 protein expression in controlling plasma cholesterol and biliary lipid secretion in mice., Hepatology, 36, 819
Ioannou, 2005, Guilty until proven innocent: the case of NPC1 and cholesterol., Trends Biochem. Sci., 30, 498, 10.1016/j.tibs.2005.07.007
Huang, 1995, A stomatin-like protein necessary for mechanosensation in C. elegans., Nature, 378, 292, 10.1038/378292a0
Rajaram, 1998, Unc-1: a stomatin homologue controls sensitivity to volatile anesthetics in Caenorhabditis elegans., Proc. Natl. Acad. Sci. U. S. A., 95, 8761, 10.1073/pnas.95.15.8761
Kurzchalia, 1999, Membrane microdomains and caveolae., Curr. Opin. Cell Biol., 11, 424, 10.1016/S0955-0674(99)80061-1
Abele, 2006, Modulation of the antigen transport machinery TAP by friends and enemies., FEBS Lett., 580, 1156, 10.1016/j.febslet.2005.11.048
Klahre, 1998, The Arabidopsis DIMINUTO/DWARF1 gene encodes a protein involved in steroid synthesis., Plant Cell, 10, 1677, 10.1105/tpc.10.10.1677
Chiou, 1996, Molecular cloning, immunochemical localization to the vacuole, and expression in transgenic yeast and tobacco of a putative sugar transporter from sugar beet., Plant Physiol., 110, 511, 10.1104/pp.110.2.511
Schwartz, 1997, Specific oxidative cleavage of carotenoids by VP14 of maize., Science, 276, 1872, 10.1126/science.276.5320.1872
Bouvier, 2005, Oxidative tailoring of carotenoids: a prospect towards novel functions in plants., Trends Plant Sci., 10, 187, 10.1016/j.tplants.2005.02.007
Nambara, 2005, Abscisic acid biosynthesis and catabolism., Annu. Rev. Plant Biol., 56, 165, 10.1146/annurev.arplant.56.032604.144046
Simkin, 2004, Circadian regulation of the PhCCD1 carotenoid cleavage dioxygenase controls emission of β-ionone, a fragrance volatile of petunia flowers., Plant Physiol., 136, 3504, 10.1104/pp.104.049718
Tan, 2003, Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family., Plant J., 35, 44, 10.1046/j.1365-313X.2003.01786.x
Ren, 2004, TransportDB: a relational database of cellular membrane transport systems., Nucleic Acids Res., 32, D284, 10.1093/nar/gkh016
Podell, 2004, Predicting N-terminal myristoylation sites in plant proteins., BMC Genomics, 5, 37, 10.1186/1471-2164-5-37