A Practical Guide to the Use of Monolayer Purification and Affinity Grids
Tài liệu tham khảo
Abraham, 2010, Structural basis for receptor recognition by New World hemorrhagic fever arenaviruses, Nat. Struct. Mol. Biol., 4, 438, 10.1038/nsmb.1772
Al-Kurdi, 2004, A soluble VE-cadherin fragment forms 2D arrays of dimers upon binding to a lipid monolayer, J. Mol. Biol., 337, 881, 10.1016/j.jmb.2004.02.021
Asturias, 1995, A novel method for transfer of two-dimensional crystals from the air/water interface to specimen grids. EM sample preparation/lipid-layer crystallization, J. Struct. Biol., 114, 60, 10.1006/jsbi.1995.1005
Asturias, 1998, Electron crystallography of yeast RNA polymerase II preserved in vitreous ice, Ultramicroscopy, 70, 133, 10.1016/S0304-3991(97)00108-3
Avila-Sakar, 1996, Visualization of β-sheets and side-chain clusters in two-dimensional periodic arrays of streptavidin on phospholipid monolayers by electron crystallography, Biophys. J., 70, 57, 10.1016/S0006-3495(96)79597-8
Azubel, 2004, Three-dimensional structure of the native spliceosome by cryo-electron microscopy, Mol. Cell, 15, 833, 10.1016/j.molcel.2004.07.022
Brisson, 1991, Structure of soluble and membrane-bound human annexin V, J. Mol. Biol., 220, 199, 10.1016/0022-2836(91)90002-N
Carragher, 2010, Software tools for molecular microscopy: An open-text Wikibook, Methods Enzymol., 482, 381, 10.1016/S0076-6879(10)82016-6
Darst, 1989, Three-dimensional structure of Escherichia coli RNA polymerase holoenzyme determined by electron crystallography, Nature, 340, 730, 10.1038/340730a0
De Carlo, 2010, Cryo-negative staining of macromolecular assemblies, Methods Enzymol., 481, 127, 10.1016/S0076-6879(10)81006-7
Ganser, 2003, Three-dimensional structure of the M-MuLV CA protein on a lipid monolayer: A general model for retroviral capsid assembly, EMBO J., 22, 2886, 10.1093/emboj/cdg276
Golas, 2003, Molecular architecture of the multiprotein splicing factor SF3b, Science, 300, 980, 10.1126/science.1084155
Hussein, 2009, Synthesis of nickel-chelating fluorinated lipids for protein monolayer crystallizations, J. Org. Chem., 74, 1473, 10.1021/jo802651p
Jurica, 2004, Three-dimensional structure of C complex spliceosomes by electron microscopy, Nat. Struct. Mol. Biol., 11, 265, 10.1038/nsmb728
Kastner, 2008, GraFix: Sample preparation for single-particle electron cryomicroscopy, Nat. Methods, 5, 53, 10.1038/nmeth1139
Kelly, 2006, Structure of the α-actinin-vinculin head domain complex determined by cryo-electron microscopy, J. Mol. Biol., 357, 562, 10.1016/j.jmb.2005.12.076
Kelly, 2008, Monolayer purification: A rapid method for isolating protein complexes for single-particle electron microscopy, Proc. Natl. Acad. Sci. USA, 105, 4703, 10.1073/pnas.0800867105
Kelly, 2008, The Affinity Grid: A pre-fabricated EM grid for monolayer purification, J. Mol. Biol., 382, 423, 10.1016/j.jmb.2008.07.023
Kelly, 2010, Molecular structure and dimeric organization of the Notch extracellular domain as revealed by electron microscopy, PLoS ONE, 5, e10532, 10.1371/journal.pone.0010532
Kelly, 2010, Strategy for the use of affinity grids to prepare non-His-tagged macromolecular complexes for single-particle electron microscopy, J. Mol. Biol., 400, 675, 10.1016/j.jmb.2010.05.045
Kettenberger, 2004, Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS, Mol. Cell, 16, 955, 10.1016/j.molcel.2004.11.040
Klaholz, 2003, Structure of the Escherichia coli ribosomal termination complex with release factor 2, Nature, 421, 90, 10.1038/nature01225
Kubalek, 1994, Two-dimensional crystallization of histidine-tagged, HIV-1 reverse transcriptase promoted by a novel nickel-chelating lipid, J. Struct. Biol., 113, 117, 10.1006/jsbi.1994.1039
Lebeau, 2001, Two-dimensional crystallization of a membrane protein on a detergent-resistant lipid monolayer, J. Mol. Biol., 308, 639, 10.1006/jmbi.2001.4629
Levy, 2001, Two-dimensional crystallization of membrane proteins: The lipid layer strategy, FEBS Lett., 504, 187, 10.1016/S0014-5793(01)02748-X
McDowall, 2010, Plunge freezing for electron cryomicroscopy, Methods Enzymol., 481, 63, 10.1016/S0076-6879(10)81003-1
Medalia, 2002, Cryoelectron microscopy and cryoelectron tomography of the nuclear pre-mRNA processing machine, J. Struct. Biol., 138, 74, 10.1016/S1047-8477(02)00027-8
Muller, 2001, Structure and mass analysis by scanning transmission electron microscopy, Micron, 32, 21, 10.1016/S0968-4328(00)00022-6
Norville, 2007, 7Å projection map of the S-layer protein sbpA obtained with trehalose-embedded monolayer crystals, J. Struct. Biol., 160, 313, 10.1016/j.jsb.2007.06.002
Ohi, 2004, Negative staining and image classification—Powerful tools in modern electron microscopy, Biol. Proced. Online, 6, 23, 10.1251/bpo70
Olofsson, 1990, Crystalline layers and three-dimensional structure of Staphylococcus aureus α-toxin, J. Mol. Biol., 214, 299, 10.1016/0022-2836(90)90162-F
Qin, 1995, Two-dimensional crystallization of avidin on biotinylated lipid monolayers, Biophys. J., 68, 2493, 10.1016/S0006-3495(95)80431-5
Radermacher, 1987, Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli, J. Microsc., 146, 113, 10.1111/j.1365-2818.1987.tb01333.x
Sjoquist, 1969, Protein A from Staphylococcus aureus. IX. Complement-fixing activity of protein A–IgG complexes, J. Immunol., 103, 467
Stagg, 2006, Automated cryoEM data acquisition and analysis of 284742 particles of GroEL, J. Struct. Biol., 155, 470, 10.1016/j.jsb.2006.04.005
Stroupe, 2009, Actin filament labels for localizing protein components in large complexes viewed by electron microscopy, RNA, 15, 244, 10.1261/rna.1313609
Tang, 2001, The three-dimensional structure of α-actinin obtained by cryoelectron microscopy suggests a model for Ca2+-dependent actin binding, J. Mol. Biol., 310, 845, 10.1006/jmbi.2001.4789
Taylor, 2008, Retrospective on the early development of cryoelectron microscopy of macromolecules and a prospective on opportunities for the future, J. Struct. Biol., 163, 214, 10.1016/j.jsb.2008.06.004
Taylor, 1993, Projection image of smooth muscle α-actinin from two-dimensional crystals formed on positively charged lipid layers, J. Mol. Biol., 230, 196, 10.1006/jmbi.1993.1136
Thess, 2002, Specific orientation and two-dimensional crystallization of the proteasome at metal-chelating lipid interfaces, J. Biol. Chem., 277, 36321, 10.1074/jbc.M202145200
Thomas, 1994, Mass analysis of biological macromolecular complexes by STEM, Biol. Cell, 80, 181, 10.1111/j.1768-322X.1994.tb00929.x
Uzgiris, 1983, Two-dimensional crystallization technique for imaging macromolecules, with application to antigen–antibody–complement complexes, Nature, 301, 125, 10.1038/301125a0
Venien-Bryan, 1997, Structural study of the response regulator HupR from Rhodobacter capsulatus. Electron microscopy of two-dimensional crystals on a nickel-chelating lipid, J. Mol. Biol., 274, 687, 10.1006/jmbi.1997.1431
Ward, 1992, The Staphylococcus aureus α-toxin channel complex and the effect of Ca2+ ions on its interaction with lipid layers, J. Struct. Biol., 109, 129, 10.1016/1047-8477(92)90044-B
