A Novel Lineage of ‘Naked Filose Amoebae’; Kraken carinae gen. nov. sp. nov. (Cercozoa) with a Remarkable Locomotion by Disassembly of its Cell Body

Protist - Tập 167 - Trang 268-278 - 2016
Kenneth Dumack1, Julia Schuster1, David Bass2,3, Michael Bonkowski1
1Biozentrum Köln, Institut für Zoologie, Abt. Terrestrische Ökologie, Universität zu Köln, Zülpicher Str. 47b, 50674 Köln, Germany
2Department of Life Sciences, Natural History Museum London, Cromwell Road, London SW7 5BD, UK
3Cefas, Barrack Road, Weymouth, Dorset DT4 8UB, UK

Tài liệu tham khảo

Adl, 2012, The revised classification of eukaryotes, J. Eukaryot Microbiol, 59, 429, 10.1111/j.1550-7408.2012.00644.x Albrecht-Buehler, 1976, Filopodia of spreading 3T3 cells. Do they have a substrate-exploring function?, J Cell Biol, 69, 275, 10.1083/jcb.69.2.275 Altekar, 2004, Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference, Bioinformatics, 20, 407, 10.1093/bioinformatics/btg427 Amaral Zettler, 2001, The nucleariid amoebae: more protists at the animal-fungal boundary, J. Eukaryot Microbiol, 48, 293, 10.1111/j.1550-7408.2001.tb00317.x Archer, 1875, On Chlamydomyxa labyrinthuloides, nov. gen. et sp., new freshwater sarcodic organism, Quart J Microsc Sci, 2, 107 Bass, 2004, Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa), Int J Syst Evol Microbiol, 54, 2393, 10.1099/ijs.0.63229-0 Bass, 2009, Phylogeny of novel naked filose and reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea revised, Protist, 160, 75, 10.1016/j.protis.2008.07.002 Bass, 2009, Phylogeny and classification of Cercomonadida (Protozoa, Cercozoa): Cercomonas, Eocercomonas, Paracercomonas, and Cavernomonas gen. nov, Protist, 160, 483, 10.1016/j.protis.2009.01.004 Bass, 2012, Reticulamoeba is a long-branched Granofilosean that is missing from sequence databases, PLoS ONE, 7, e49090, 10.1371/journal.pone.0049090 Berney, 2013, Vampires in the oceans: predatory cercozoan amoebae in marine habitats, ISME J, 7, 2387, 10.1038/ismej.2013.116 Berney, 2015, Expansion of the “reticulosphere”: diversity of novel branching and network-forming amoebae helps to define Variosea (Amoebozoa), Protist, 166, 271, 10.1016/j.protis.2015.04.001 Brabender, 2012, Phylogenetic and morphological diversity of novel soil cercomonad species with a description of two new genera (Nucleocercomonas and Metabolomonas), Protist, 163, 495, 10.1016/j.protis.2012.02.002 Butler, 1995, Temporal and spatial abundance of naked amoebae (gymnamoebae) in marine benthic sediments of the Clyde Sea Area, Scotland, J Eukaryot Microbiol, 42, 724, 10.1111/j.1550-7408.1995.tb01624.x Cash, 1904, On some new and little-known British freshwater Rhizopoda, Zool J LinnSoc, 29, 218, 10.1111/j.1096-3642.1904.tb00436.x Cash, 1905, Vol. 1 Cavalier-Smith, 1998, Neomonada and the Origin of Animals and Fungi, 375 Cavalier-Smith, 1998, A revised six-kingdom system of life, Biol Rev Camb Philos Soc, 73, 203, 10.1017/S0006323198005167 Cavalier-Smith, 2003, Phylogeny and classification of phylum Cercozoa (Protozoa), Protist, 154, 341, 10.1078/143446103322454112 Cienkowski, 1865, Beiträge zur Kenntnis der Monaden, Arch Mikrosk Anat, 5, 203, 10.1007/BF02961414 Dumack, 2016, Description of Lecythium terrestris sp. nov. (Chlamydophryidae, Cercozoa), a soil dwelling protist feeding on fungi and algae, Protist, 167, 93, 10.1016/j.protis.2016.01.001 Harder, 2016, Local diversity of heathland Cercozoa explored by in-depth sequencing, ISME J, 10.1038/ismej.2016.31 Hess, 2012, Shedding light on vampires: the phylogeny of vampyrellid amoebae revisited, PloS ONE, 7, e31165, 10.1371/journal.pone.0031165 Howe, 2009, Phylogeny, taxonomy, and astounding genetic diversity of Glissomonadida ord. nov., the dominant gliding zooflagellates in soil (Protozoa: Cercozoa), Protist, 160, 159, 10.1016/j.protis.2008.11.007 Howe, 2011, Novel cultured protists identify deep- branching environmental DNA clades of Cercozoa: new genera Tremula, Micrometopion, Minimassisteria, Nudifila, Peregrinia, Protist, 162, 332, 10.1016/j.protis.2010.10.002 Jeuck, 2013, A short guide to common heterotrophic flagellates of freshwater habitats based on the morphology of living organisms, Protist, 164, 842, 10.1016/j.protis.2013.08.003 Katoh, 2013, MAFFT multiple sequence alignment software version 7: improvements in performance and usability, Mol Biol Evol, 30, 772, 10.1093/molbev/mst010 Lankester, 1890 Medlin, 1988, The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions, Gene, 71, 491, 10.1016/0378-1119(88)90066-2 Miller, 2010, Creating the CIPRES Science Gateway for inference of large phylogenetic trees, Gateway Computing Environments (GCE), 1, 10.1109/GCE.2010.5676129 Nakai, 2012, Eukaryotic phylotypes in aquatic moss pillars inhabiting a freshwater lake in East Antarctica, based on 18S rRNA gene analysis, Polar Biol, 35, 1495, 10.1007/s00300-012-1188-1 Neuhauser, 2014, Cross-kingdom host shifts of phytomyxid parasites, BMC Evol Biol, 14, 33, 10.1186/1471-2148-14-33 Ota, 2007, Taxonomic study of Bigelowiella longifila sp. nov. (Chlorarachniophyta) and a time-lapse video observation of the unique migration of amoeboid cells, J Phycol, 43, 333, 10.1111/j.1529-8817.2007.00316.x Page, 1988 Prescott, 1955, Culturing of Amoeba proteus on Tetrahymena, Exp Cell Res, 8, 256, 10.1016/0014-4827(55)90067-7 Poulíčková, 2008, Ecological variation within Sellaphora species complexes (Bacillariophyceae): specialists or generalists?, Hydrobiologia, 614, 373, 10.1007/s10750-008-9521-y Quintela-Alonso, 2011, Molecular characterization and revised systematics of Microdiaphanosoma arcuatum (Ciliophora, Colpodea), J Eukaryot Microbiol, 58, 114, 10.1111/j.1550-7408.2010.00527.x Rhumbler, 1904, Systematische Zusammenstellung der rezenten Reticulosa (Nuda+Foraminifera), Arch Protistenkd, 3, 181 Ronquist, 2012, MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space, Syst Biol, 61, 539, 10.1093/sysbio/sys029 Smirnov, 2011, A revised classification of naked lobose amoebae (Amoebozoa: Lobosa), Protist, 162, 545, 10.1016/j.protis.2011.04.004 Smirnov, 2004, Guide to the methods of study and identification of soil Gymnamoebae, Protistology, 3, 148 Stamatakis, 2006, RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models, Bioinformatics, 22, 2688, 10.1093/bioinformatics/btl446 Stamatakis, 2014, RAxML Version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinformatics, 30, 1312, 10.1093/bioinformatics/btu033 Stamatakis, 2008, A rapid bootstrap algorithm for the RAxML web servers, Syst Biol, 57, 758, 10.1080/10635150802429642 Wylezich, 2002, Phylogenetic analyses of small subunit ribosomal RNA coding regions reveal a monophyletic lineage of euglyphid testate amoebae (Order Euglyphida), J Eukaryot Microbiol, 49, 108, 10.1111/j.1550-7408.2002.tb00352.x