A Hardware Accelerator for the Fast Retrieval of DIALIGN Biological Sequence Alignments in Linear Space

10.1109/TCSVT.2005.857780

10.1109/MC.1987.1663617

2006, SGI Reconfigurable Application Specific Computing Accelerating Production Workflows

10.1109/FPL.2007.4380764

10.1080/00207160211299

10.1109/41.744413

2005, Cynthesizer User's Guide For Cynthesizer 2 4 0

0, Introduction to the Quartus II Software Version 8 0

10.1016/0022-2836(70)90057-4

mount, 2004, Bioinformatics Sequence and Genome Analysis

10.1016/0022-2836(82)90398-9

10.1093/bioinformatics/4.1.11

10.1145/360825.360861

10.1109/MC.1982.1653825

lipton, 1985, A Systolic Array for Rapid String Comparison, Proc Chapel Hill Conf VLSI, 363

lavenier, 1998, Speeding up Genome Computations with a Systolic Accelerator, SIAM News, 31, 6

lipman, 1985, Rapid and Sensitive Protein Similarity Searches, Science, 227, 1435, 10.1126/science.2983426

10.1093/bioinformatics/14.3.290

storaasli, 2007, Performance of FPGA-Based Biological Applications, Proc Cray User Group Meeting

10.1016/0022-2836(81)90087-5

schmollinger, 2004, DIALIGN ?: Fast Pair-Wise and Multiple Sequence Alignment using Parallel Processors, BMC Bioinformatics, 5, 10.1186/1471-2105-5-128

10.1109/AHS.2007.45

siddhartan, 2006, Sigma: Multiple Alignment of Weakly-Conserved Non-Coding DNA Sequence, BMC Bioinformatics, 7

10.1109/MC.2008.65

10.1093/nar/gkh373

10.1017/CBO9780511790492

2006, IEEE Standard SystemC Language

10.1109/ICPP.2007.74

yamaguchi, 2002, High Speed Homology Search with FPGAs, Proc Pacific Symp Biocomputing (PSB)

10.1002/cpe.813

10.1109/ICVD.2003.1183193

10.1109/TPDS.2005.12

10.1145/1046192.1046222

10.1109/TCSII.2007.909857

10.1145/1328554.1328565