A Functional Agonist of Insect Olfactory Receptors: Behavior, Physiology and Structure

Srishti Batra1, Jacob A. Corcoran2, Dandan Zhang2, Pramit Pal1, Umesh K.P.1, Renuka Kulkarni1, Christer Löfstedt2, Ramanathan Sowdhamini1, Shannon B. Olsson1
1National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru, India
2Department of Biology, Lund University, Lund, Sweden

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Badsha, 2012, Mutants in Drosophila TRPC channels reduce olfactory sensitivity to carbon dioxide., PLoS One, 7, 10.1371/journal.pone.0049848

Benton, 2015, Multigene family evolution: perspectives from insect chemoreceptors., Trends Ecol. Evol., 30, 590, 10.1016/J.TREE.2015.07.009

Benton, 2006, Atypical membrane topology and heteromeric function of Drosophila odorant receptors in vivo., PLoS Biol., 4, 10.1371/journal.pbio.0040020

Benton, 2009, Variant ionotropic glutamate receptors as chemosensory receptors in Drosophila., Cell, 136, 149, 10.1016/j.cell.2008.12.001

Berman, 2000, The protein data bank., Nucleic Acids Res., 28, 235, 10.1093/nar/28.1.235

Berna, 2009, Bio-benchmarking of electronic nose sensors., PLoS One, 4, 10.1371/journal.pone.0006406

Brand, 2018, The origin of the odorant receptor gene family in insects., eLife, 7, 10.7554/eLife.38340

Buck, 1991, A novel multigene family may encode odorant receptors: a molecular basis for odor recognition., Cell, 65, 175, 10.1016/0092-8674(91)90418-X

Butterwick, 2018, Cryo-EM structure of the insect olfactory receptor Orco., Nature, 560, 447, 10.1038/s41586-018-0420-8

Clyne, 1999, A novel family of divergent seven-transmembrane proteins: candidate odorant receptors in Drosophila., Neuron, 22, 327, 10.1016/S0896-6273(00)81093-4

Cockcroft, 1998, Comparative repellency of commercial formulations of deet, permethrin and citronellal against the mosquito Aedes aegypti, using a collagen membrane technique compared with human arm tests., Med. Vet. Entomol., 12, 289, 10.1046/j.1365-2915.1998.00121.x

Corcoran, 2014, A novel method to study insect olfactory receptor function using HEK293 cells., Insect Biochem. Mol. Biol., 54, 22, 10.1016/j.ibmb.2014.08.005

De Bruyne, 2001, Odor coding in the Drosophila antenna., Neuron, 30, 537, 10.1016/S0896-6273(01)00289-6

Dobritsa, 2003, Integrating the molecular and cellular basis of odor coding in the Drosophila antenna., Neuron, 37, 827, 10.1016/S0896-6273(03)00094-1

Eisner, 1995, Chemical ecology: the chemistry of biotic interaction., Natl. Acad. Press, 92, 14

2005, Evaluation of certain food additives., World Health Organ. Tech. Rep. Ser., 928, 1

Friesner, 2006, Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes., J. Med. Chem., 49, 6177, 10.1021/jm051256o

Fujii, 2015, Drosophila sugar receptors in sweet taste perception, olfaction, and internal nutrient sensing., Curr. Biol., 25, 621, 10.1016/j.cub.2014.12.058

Gao, 1999, Identification of candidate Drosophila olfactory receptors from genomic DNA sequence., Genomics, 60, 31, 10.1006/geno.1999.5894

Große-Wilde, 2010, Sex-specific odorant receptors of the tobacco hornworm Manduca sexta., Front. Cell. Neurosci., 4, 10.3389/fncel.2010.00022

Halgren, 2009, Identifying and characterizing binding sites and assessing druggability., J. Chem. Inf. Model., 49, 377, 10.1021/ci800324m

Hallem, 2004, The odor coding system of Drosophila., Trends Genet., 20, 453, 10.1016/j.tig.2004.06.015

Hallem, 2006, Coding of odors by a receptor repertoire., Cell, 125, 143, 10.1016/j.cell.2006.01.050

Hallem, 2004, The molecular basis of odor coding in the Drosophila antenna., Cell, 117, 965, 10.1016/j.cell.2004.05.012

Hofmann, 1993, TMbase - A database of membrane spanning proteins segments., Biol. Chem. Hoppe Seyler, 374

Hughes, 2014, A determinant of odorant specificity is located at the extracellular loop 2-transmembrane domain 4 interface of an Anopheles gambiae odorant receptor subunit., Chem. Senses, 39, 761, 10.1093/chemse/bju048

Jin, 2008, SNMP is a signaling component required for pheromone sensitivity in Drosophila., Proc. Natl. Acad. Sci. U.S.A., 105, 10996, 10.1073/pnas.0803309105

Jones, 1999, Protein secondary structure prediction based on position-specific scoring matrices., J. Mol. Biol., 292, 195, 10.1006/jmbi.1999.3091

Jones, 2007, Improving the accuracy of transmembrane protein topology prediction using evolutionary information., Bioinformatics, 23, 538, 10.1093/bioinformatics/btl677

Jones, 2011, Functional agonism of insect odorant receptor ion channels., Proc. Natl. Acad. Sci. U.S.A., 108, 8821, 10.1073/pnas.1102425108

Käll, 2004, A combined transmembrane topology and signal peptide prediction method., J. Mol. Biol., 338, 1027, 10.1016/j.jmb.2004.03.016

Käll, 2005, An HMM posterior decoder for sequence feature prediction that includes homology information., Bioinformatics, 21, i251, 10.1093/bioinformatics/bti1014

Kim, 2016, PubChem substance and compound databases., Nucleic Acids Res., 44, D1202, 10.1093/nar/gkv951

Knaden, 2012, Spatial representation of odorant valence in an insect brain., Cell Rep., 1, 392, 10.1016/j.celrep.2012.03.002

Krång, 2012, Transition from sea to land: olfactory function and constraints in the terrestrial hermit crab Coenobita clypeatus., Proc. Biol. Sci., 279, 3510, 10.1098/rspb.2012.0596

Krogh, 2001, Predicting transmembrane protein topology with a hidden markov model: application to complete genomes., J. Mol. Biol., 305, 567, 10.1006/jmbi.2000.4315

Kurtovic, 2007, A single class of olfactory neurons mediates behavioural responses to a Drosophila sex pheromone., Nature, 446, 542, 10.1038/nature05672

Larsson, 2004, Or83b encodes a broadly expressed odorant receptor essential for Drosophila olfaction., Neuron, 43, 703, 10.1016/j.neuron.2004.08.019

Larter, 2016, Organization and function of Drosophila odorant binding proteins., eLife, 5, 10.7554/eLife.20242

Laskowski, 1993, PROCHECK: a program to check the stereochemical quality of protein structures., J. Appl. Crystallogr., 26, 283, 10.1107/S0021889892009944

Leal, 2013, Odorant reception in insects: roles of receptors, binding proteins, and degrading enzymes., Annu. Rev. Entomol., 58, 373, 10.1146/annurev-ento-120811-153635

Lua, 2016, UET: a database of evolutionarily-predicted functional determinants of protein sequences that cluster as functional sites in protein structures., Nucleic Acids Res., 44, D308, 10.1093/nar/gkv1279

Luo, 2018, Sensory biology: structure of an insect chemoreceptor., Curr. Biol., 28, R1202, 10.1016/j.cub.2018.09.002

Malnic, 1999, Combinatorial receptor codes for odors., Cell, 96, 713, 10.1016/S0092-8674(00)80581-4

Missbach, 2014, Evolution of insect olfactory receptors., eLife, 3, 10.7554/eLife.02115

Münch, 2016, DoOR 2.0 - Comprehensive mapping of Drosophila melanogaster odorant responses., Sci. Rep., 6, 10.1038/srep21841

Nagarathnam, 2014, DOR - A database of olfactory receptors - Integrated repository for sequence and Secondary structural information of olfactory receptors in selected eukaryotic genomes., Bioinform. Biol. Insights, 8, 147, 10.4137/BBI.S14858

Nichols, 2010, Transmembrane segment 3 of Drosophila melanogaster odorant receptor subunit 85b contributes to ligand-receptor interactions., J. Biol. Chem., 285, 11854, 10.1074/jbc.M109.058321

Nugent, 2009, Transmembrane protein topology prediction using support vector machines., BMC Bioinformatics, 10, 10.1186/1471-2105-10-159

Olsson, 2015, Biosynthetic infochemical communication., Bioinspir. Biomim., 10, 10.1088/1748-3190/10/4/043001

Pellegrino, 2010, Single sensillum recordings in the insects Drosophila melanogaster and Anopheles gambiae., J. Vis. Exp., 36, 1, 10.3791/1725

Pirovano, 2008, PRALINETM: a strategy for improved multiple alignment of transmembrane proteins., Bioinformatics, 24, 492, 10.1093/bioinformatics/btm636

Raguso, 2016, More lessons from linalool: insights gained from a ubiquitous floral volatile., Curr. Opin. Plant Biol., 32, 31, 10.1016/j.pbi.2016.05.007

Ray, 2014, Molecular determinants of odorant receptor function in insects., J. Biosci., 39, 555, 10.1007/s12038-014-9447-7

Rost, 1995, Transmembrane helices predicted at 95 % accuracy., Protein Sci., 4, 521, 10.1002/pro.5560040318

Šali, 1993, Comparative protein modelling by satisfaction of spatial restraints., J. Mol. Biol., 234, 779, 10.1006/JMBI.1993.1626

Sato, 2011, Sugar-regulated cation channel formed by an insect gustatory receptor., Proc. Natl. Acad. Sci. U.S.A., 108, 11680, 10.1073/pnas.1019622108

Sievers, 2011, Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega., Mol. Syst. Biol., 7, 10.1038/msb.2011.75

Stensmyr, 2012, A conserved dedicated olfactory circuit for detecting harmful microbes in Drosophila., Cell, 151, 1345, 10.1016/j.cell.2012.09.046

Stocker, 1994, The organization of the chemosensory system in Drosophila melanogaster: a review., Cell Tissue Res., 275, 3, 10.1007/BF00305372

Suh, 2004, A single population of olfactory sensory neurons mediates an innate avoidance behaviour in Drosophila., Nature, 431, 854, 10.1038/nature02980

Tait, 2016, Sensory specificity and speciation: a potential neuronal pathway for host fruit odour discrimination in Rhagoletis pomonella., Proc. R. Soc. Lond. B Biol. Sci., 283, 10.1098/rspb.2016.2101

2017, UniProt: the universal protein knowledgebase., Nucleic Acids Res., 45, D158, 10.1093/nar/gkw1099

Tusnády, 2001, The HMMTOP transmembrane topology prediction server., Bioinformatics, 17, 849, 10.1093/bioinformatics/17.9.849

Vosshall, 1999, A spatial map of olfactory receptor expression in the Drosophila antenna., Cell, 96, 725, 10.1016/S0092-8674(00)80582-6

Vosshall, 2007, Molecular architecture of smell and taste in Drosophila., Annu. Rev. Neurosci., 30, 505, 10.1146/annurev.neuro.30.051606.094306

Waterhouse, 2009, Jalview Version 2 - A multiple sequence alignment editor and analysis workbench., Bioinformatics, 25, 1189, 10.1093/bioinformatics/btp033

Wicher, 2017, “Chemoreceptors in evolution,” in, Evolution of Nervous Systems 2e, 245, 10.1016/B978-0-12-804042-3.00021-X

Wiederstein, 2007, ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins., Nucleic Acids Res., 35, 407, 10.1093/nar/gkm290

2006, Safety evaluation of certain food additives., FAO Food Nutr. Pap., 82, 1

Xu, 2005, Drosophila OBP LUSH is required for activity of pheromone-sensitive neurons., Neuron, 45, 193, 10.1016/J.NEURON.2004.12.031

Xu, 2013, Probing insect odorant receptors with their cognate ligands: insights into structural features., Biochem. Biophys. Res. Commun., 435, 477, 10.1016/j.bbrc.2013.05.015

Yang, 2014, The I-TASSER suite: protein structure and function prediction., Nat. Methods, 12, 7, 10.1038/nmeth.3213

Zhang, 2013, Functional evolution of a multigene family: orthologous and paralogous pheromone receptor genes in the turnip moth, Agrotis segetum., PLoS One, 8, 1, 10.1371/journal.pone.0077345