A Comparative Study of Pygmy Hippopotamus (Choeropsis liberiensis) Karyotype by Cross-Species Chromosome Painting

Balmus G, Trifonov VA, Biltueva LS, O’Brien PCM, Alkalaeva ES, Fu B, Skidmore JA, Allen T, Graphodatsky AS, Yang F, Ferguson-Smith MA (2007) Cross-species chromosome painting among camel, cattle, pig and human: further insights into the putative Cetartiodactyla ancestral karyotype. Chromosome Res 15:499–514 Boisserie J-R, Fisher RE, Lihoreau F, Weston EM (2011) Evolving between land and water: key questions on the emergence and history of the Hippopotamidae (Hippopotamoidea, Cetancodonta, Cetartiodactyla). Biol Rev 86:601–625 Boisserie J-R, Lihoreau F, Brunet M (2005) The position of Hippopotamidae within Cetartiodactyla. Proc Natl Acad Sci USA 102:1537–1541 Bonnet A, Thévenon S, Claro F, Gautier M, Hayes H (2001) Cytogenetic comparison between Vietnamese sika deer and cattle: R-banded karyotypes and FISH mapping. Chromosome Res 9:673–687 Cernohorska H, Kubickova S, Kopecna O, Kulemzina AI, Perelman PL, Elder FFB, Robinson TJ, Graphodatsky AS, Rubes J (2013) Molecular cytogenetic insights to the phylogenetic affinities of the giraffe (Giraffa camelopardalis) and pronghorn (Antilocapra americana). Chromosome Res 21:447–460 Cernohorska H, Kubickova S, Kopecna O, Vozdova M, Matthee CA, Robinson TJ, Rubes J (2014) Nanger, Eudorcas, Gazella, and Antilope form a well-supported chromosomal clade within Antilopini (Bovidae, Cetartiodactyla). Chromosoma 124:235–247 Cernohorska H, Kubickova S, Vahala J, Robinson TJ, Rubes J (2011) Cytotypes of Kirk’s dik-dik (Madoqua kirkii, Bovidae) show multiple tandem fusions. Cytogenet Genome Res 132:255–263 Cernohorska H, Kubickova S, Vahala J, Rubes J (2012) Molecular insights into X;BTA5 chromosome rearrangements in the tribe Antilopini (Bovidae). Cytogenet Genome Res 136:188–198 Dementyeva PV, Trifonov VA, Kulemzina AI, Graphodatsky AS (2010) Reconstruction of the putative Cervidae ancestral karyotype by chromosome painting of Siberian roe deer (Capreolus pygargus) with dromedary probes. Cytogenet Genome Res 128:228–235 Gallagher DS, Davis SK, De Donato M, Burzlaff JD, Womack JE, Taylor JF, Kumamoto AT (1999) A molecular cytogenetic analysis of the tribe Bovini (Artiodactyla: Bovidae: Bovinae) with an emphasis on sex chromosome morphology and NOR distribution. Chromosome Res 7:481–492 Gribble SM, Ng BL, Prigmore E, Fitzgerald T, Carter NP (2009) Array painting: a protocol for the rapid analysis of aberrant chromosomes using DNA microarrays. Nat Protoc 4:1722–1736 Groves C, Grubb P (2011) Ungulate Taxonomy. Johns Hopkins University Press, Baltimore Hassanin A, Delsuc F, Ropiquet A, Hammer C, Jansen van Vuuren B, Matthee C, Ruiz-Garcia M, Catzeflis F, Areskoug V, Nguyen TT, Couloux A (2012) Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes. CR Biol 335:32–50 Hsu TC, Benirschke K (2013) An Atlas of Mammalian Chromosomes. Springer Science & Business Media, New York Huang L, Chi J, Nie W, Wang J, Yang F (2006) Phylogenomics of several deer species revealed by comparative chromosome painting with Chinese muntjac paints. Genetica 127:25–33 Iannuzzi L, Di Meo GP, Perucatti A, Incarnato D, Schibler L, Cribiu EP (2000) Comparative FISH mapping of bovid X chromosomes reveals homologies and divergences between the subfamilies Bovinae and Caprinae. Cytogenet Cell Genet 89:171–176 Iannuzzi L, King WA, Di Berardino D (2009) Chromosome evolution in domestic bovids as revealed by chromosome banding and FISH-mapping techniques. Cytogenet Genome Res 126:49–62 Kubickova S, Cernohorska H, Musilova P, Rubes J (2002) The use of laser microdissection for the preparation of chromosome-specific painting probes in farm animals. Chromosome Res 10:571–577 Kulemzina AI, Perelman PL, Grafodatskaya DA, Nguyen TT, Thompson M, Roelke-Parker ME, Graphodatsky AS (2014) Comparative chromosome painting of pronghorn (Antilocapra americana) and saola (Pseudoryx nghetinhensis) karyotypes with human and dromedary camel probes. BMC Genet 15:68 Kulemzina AI, Proskuryakova AA, Beklemisheva VR, Lemskaya NA, Perelman PL, Graphodatsky AS (2016) Comparative chromosome map and heterochromatin features of the Gray whale karyotype (Cetacea). Cytogenet Genome Res. 148:25–34 Kulemzina AI, Trifonov VA, Perelman PL, Rubtsova NV, Volobuev V, Ferguson-Smith MA, Stanyon R, Yang F, Graphodatsky AS (2009) Cross-species chromosome painting in Cetartiodactyla: reconstructing the karyotype evolution in key phylogenetic lineages. Chromosome Res 17:419–436 Kulemzina AI, Yang F, Trifonov VA, Ryder OA, Ferguson-Smith MA, Graphodatsky AS (2011) Chromosome painting in Tragulidae facilitates the reconstruction of Ruminantia ancestral karyotype. Chromosome Res 19:531–539 Lee C, Griffin DK, O’Brien PC, Yang F, Lin CC, Ferguson-Smith MA (1998) Defining the anatomy of the Rangifer tarandus sex chromosomes. Chromosoma 107:61–69 Musilova P, Kubickova S, Hornak M, Cernohorska H, Vahala J, Rubes J (2010) Different fusion configurations of evolutionarily conserved segments in karyotypes of Potamochoerus porcus and Phacochoerus africanus. Cytogenet Genome Res 129:305–309 Perucatti A, Genualdo V, Iannuzzi A, Rebl A, Berardino DD, Goldammer T, Iannuzzi L (2012) Advanced comparative cytogenetic analysis of X chromosomes in river buffalo, cattle, sheep, and human. Chromosome Res 20:413–425 Pinkel D, Landegent J, Collins C, Fuscoe J, Segraves R, Lucas J, Gray J (1988) Fluorescence in situ hybridization with human chromosome-specific libraries: detection of trisomy 21 and translocations of chromosome 4. Proc Natl Acad Sci USA 85:9138–9142 Piumi F, Schibler L, Vaiman D, Oustry A, Cribiu EP (1998) Comparative cytogenetic mapping reveals chromosome rearrangements between the X chromosomes of two closely related mammalian species (cattle and goats). Cytogenet Cell Genet 81:36–41 Robinson TJ, Harrison WR, Ponce de León FA, Davis SK, Elder FF (1998) A molecular cytogenetic analysis of X chromosome repatterning in the Bovidae: transpositions, inversions, and phylogenetic inference. Cytogenet Cell Genet 80:179–184 Robinson TJ, Harrison WR, Ponce de León A, Elder FF (1997) X chromosome evolution in the suni and eland antelope: detection of homologous regions by fluorescence in situ hybridization and G-banding. Cytogenet Cell Genet 77:218–222 Rubes J, Kubickova S, Pagacova E, Cernohorska H, Di Berardino D, Antoninova M, Vahala J, Robinson TJ (2008) Phylogenomic study of spiral-horned antelope by cross-species chromosome painting. Chromosome Res 16:935–947 Rubes J, Musilova P, Kopecna O, Kubickova S, Cernohorska H, Kulemsina AI (2012) Comparative molecular cytogenetics in Cetartiodactyla. Cytogenet Genome Res 137:194–207 Seabright M (1971) A rapid banding technique for human chromosomes. Lancet 2:971–972 Telenius H, Carter NP, Bebb CE, Nordenskjold M, Ponder BAJ, Tunnacliffe A (1992) Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 13:718–725 Theodor JM (2004) Molecular clock divergence estimates and the fossil record of Cetartiodactyla. J Paleontol 78:39–44 Waddell PJ, Okada N, Hasegawa M (1999) Towards resolving the interordinal relationships of placental mammals. Syst Biol 48:1–5 Yang F, Fu B, O’Brien PCM, Nie W, Ryder OA, Ferguson-Smith MA (2005) Refined genome-wide comparative map of the domestic horse, donkey and human based on cross-species chromosome painting: insight into the occasional fertility of mules. Chromosome Res 12:65–76