A CRISPRi mediated self-inducible system for dynamic regulation of TCA cycle and improvement of itaconic acid production in Escherichia coli
Tài liệu tham khảo
Ji, 2021, Improve the biosynthesis of baicalein and scutellarein via manufacturing self-assembly enzyme reactor in vivo, ACS Synth Biol, 1 0, 1087, 10.1021/acssynbio.0c00606
Miscevic, 2021, Strain engineering for high-level 5-aminolevulinic acid production in Escherichia coli, Biotechnol Bioeng, 118, 30, 10.1002/bit.27547
Paddon, 2014, Semi-synthetic artemisinin: a model for the use of synthetic biology in pharmaceutical development, Nat Rev Microbiol, 12, 355, 10.1038/nrmicro3240
Chen, 2013, Establishing a platform cell factory through engineering of yeast acetyl-CoA metabolism, Metab Eng, 15, 48, 10.1016/j.ymben.2012.11.002
Gao, 2019, Programmable biomolecular switches for rewiring flux in Escherichia coli, Nat Commun, 10, 3751, 10.1038/s41467-019-11793-7
Keasling, 2010, Manufacturing molecules through metabolic engineering, Science, 330, 135 5, 10.1126/science.1193990
Kamp, 2017, Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms, Nat Commun, 8
Kuenz, 2018, Biotechnological production of itaconic acid-things you have to know, Appl Microbiol Biotechnol, 102, 3901, 10.1007/s00253-018-8895-7
Nuss, 2012, Attributional life cycle assessment (ALCA) of polyitaconic acid production from northeast US softwood biomass, Int J Life Cycle Assess, 18, 603, 10.1007/s11367-012-0511-y
Cordes, 2015, Itaconic acid: the surprising role of an industrial compound as a mammalian antimicrobial metabolite, Annu Rev Nutr, 35, 451, 10.1146/annurev-nutr-071714-034243
Strelko, 2011, Itaconic acid is a mammalian metabolite induced during macrophage activation, J Am Chem Soc, 133, 163 86, 10.1021/ja2070889
Yang, 2018, Manufacturing multienzymatic complex reactors in vivo by self-assembly to improve the biosynthesis of itaconic acid in Escherichia coli, ACS Synth Biol, 7, 1244, 10.1021/acssynbio.8b00086
Noh, 2018, Production of itaconic acid from acetate by engineering acid-tolerant Escherichia coli W, Biotechnol Bioeng, 115, 729, 10.1002/bit.26508
Harder, 2016, Model-based metabolic engineering enables high yield itaconic acid production by Escherichia coli, Metab Eng, 38, 29, 10.1016/j.ymben.2016.05.008
Vuoristo, 2015, Metabolic engineering of itaconate production in Escherichia coli, Appl Microbiol Biotechnol, 99, 221, 10.1007/s00253-014-6092-x
Harder, 2018, Temperature-dependent dynamic control of the TCA cycle increases volumetric productivity of itaconic acid production by Escherichia coli, Biotechnol Bioeng, 115, 156, 10.1002/bit.26446
Jiang, 2015, Multigene editing in the Escherichia coli genome via the CRISPR-Cas9 system, Appl Environ Microbiol, 81, 2506, 10.1128/AEM.04023-14
Sander, 2019, CRISPRi-based downregulation of transcriptional feedback improves growth and metabolism of arginine overproducing E. coli, ACS Synth Biol, 8, 1983, 10.1021/acssynbio.9b00183
Cornuault, 2021, Induction and elimination of prophages using CRISPR interference, CRISPR J, 4, 549, 10.1089/crispr.2021.0026
Qi, 2013, Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression, Cell, 152, 1173, 10.1016/j.cell.2013.02.022
Santos-Moreno, 2020, Multistable and dynamic CRISPRi-based synthetic circuits, Nat Commun, 11, 2746, 10.1038/s41467-020-16574-1
Wu, 2021, Engineering an optogenetic CRISPRi platform for improved chemical production, ACS Synth Biol, 10, 125, 10.1021/acssynbio.0c00488
Yi, 2021, Redirection of metabolic flux in Shewanella oneidensis MR-1 by CRISPRi and modular design for 5-aminolevulinic acid production, Biores Bioprocess, 8, 13, 10.1186/s40643-021-00366-6
Cleto, 2016, Corynebacterium glutamicum metabolic engineering with CRISPR interference (CRISPRi), ACS Synth Biol, 5, 375, 10.1021/acssynbio.5b00216
Yamamoto, 2015, Challenges in the production of itaconic acid by metabolically engineered Escherichia coli, Bioengineered, 6, 303, 10.1080/21655979.2015.1068471
Hanko, 2018, A transcription factor-based biosensor for detection of itaconic acid, ACS Synth Biol, 7, 1436, 10.1021/acssynbio.8b00057
Kraut-Cohen, 2013, Translation- and SRP-independent mRNA targeting to the endoplasmic reticulum in the yeast Saccharomyces cerevisiae, Mol Biol Cell, 24, 3069, 10.1091/mbc.e13-01-0038
Valentini, 1993, Divergent binding sites in pyruvate kinases I and II from Escherichia coli, Biol Chem Hoppe Seyler, 374, 69, 10.1515/bchm3.1993.374.1-6.69
Ponce, 1995, Cloning of the two pyruvate kinase isoenzyme structural genes from Escherichia coli: the relative roles of these enzymes in pyruvate biosynthesis, J Bacteriol, 177, 5719, 10.1128/jb.177.19.5719-5722.1995
Becker, 2020, An optimized Ustilago maydis for itaconic acid production at maximal theoretical yield, J Basel, 7, 20
Zhao, 2018, Itaconic acid production in microorganisms, Biotechnol Lett, 40, 455, 10.1007/s10529-017-2500-5
Qi, 2017, Engineering a new metabolic pathway for itaconate production in Pichia stipitis from xylose, Biochem Eng J, 126, 101, 10.1016/j.bej.2017.06.011
Goncalves, 2012, Induced fit and the catalytic mechanism of isocitrate dehydrogenase, Biochemistry, 51, 7098, 10.1021/bi300483w
Richter, 2016, Engineering of temperature- and light-switchable Cas9 variants, Nucleic Acids Res, 44, 10.1093/nar/gkw930
Yin, 2017, Pgas, a low-pH-induced promoter, as a tool for dynamic control of gene expression for metabolic engineering of Aspergillus Niger, Appl Environ Microbiol, 83, 10.1128/AEM.03222-16
Shen, 2019, Dynamic gene expression engineering as a tool in pathway engineering, Curr Opin Biotechnol, 59, 122, 10.1016/j.copbio.2019.03.019
Farmer, 2000, Improving lycopene production in Escherichia coli by engineering metabolic control, Nat Biotechnol, 18, 533, 10.1038/75398
Zeynaloo, 2021, Design of a mediator-free, non-enzymatic electrochemical biosensor for glutamate detection, Nanomedicine, 3 1, 102305, 10.1016/j.nano.2020.102305
Wang, 2019, Ultrafast glutamate biosensor recordings in brain slices reveal complex single exocytosis transients, ACS Chem Neurosci, 10, 1744, 10.1021/acschemneuro.8b00624
Chen, 2018, Coumarinocoumarin-based two-photon fluorescent cysteine biosensor for targeting lysosome, Anal Chem, 90, 6138, 10.1021/acs.analchem.8b00434
Ji, 2020, CRISPRi/dCpf1-mediated dynamic metabolic switch to enhance butenoic acid production in Escherichia coli, Appl Microbiol Biotechnol, 104, 5385, 10.1007/s00253-020-10610-2
Zhang, 2017, Multiplex gene regulation by CRISPR-ddCpf1, Cell Discov, 3, 17018, 10.1038/celldisc.2017.18
Wang, 2017, Multiplex gene editing in rice using the CRISPR-Cpf1 system, Mol Plant, 10, 1011, 10.1016/j.molp.2017.03.001
Tak, 2017, Inducible and multiplex gene regulation using CRISPR-Cpf1-based transcription factors, Nat Methods, 14, 1163, 10.1038/nmeth.4483
Ungerer, 2016, Cpf1 is a versatile tool for CRISPR genome editing across diverse species of cyanobacteria, Sci Rep, 6, 39681, 10.1038/srep39681
