HIV-1 subtype B: Traces of a pandemic
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Abecasis, 2009, Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution, J. Virol., 83, 12917, 10.1128/JVI.01022-09
Abecasis, 2013, HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics, Retrovirology, 10, 7, 10.1186/1742-4690-10-7
Adrien, 1993, AIDS-related knowledge, attitudes, beliefs, and practices in Haiti, Bull. Pan Am. Health Organ., 27, 234
Aldrich, 2012, Global HIV-1 diversity surveillance, Trends Mol. Med., 18, 691, 10.1016/j.molmed.2012.06.004
Arán-Matero, 2011, Levels of spending and resource allocation to HIV programs and services in Latin America and the Caribbean, PLoS One, 6, e22373, 10.1371/journal.pone.0022373
Araujo, 2010, Lower prevalence of human immunodeficiency virus type 1 Brazilian subtype B found in northeastern Brazil with slower progression to AIDS, AIDS Res. Hum. Retrovir., 26, 1249, 10.1089/aid.2010.0068
de Arazoza, 2007, The HIV/AIDS epidemic in Cuba: description and tentative explanation of its low HIV prevalence, BMC Infect. Dis., 7, 130, 10.1186/1471-2334-7-130
Arruda L., Romano C., Martinez M., Araújo M., Costa F., Oliveira K., et al., 2011. The HIV-1 Subtype B variant (B’-GWGR motif) was introduced by founder effect among the HIV-1-infected subjects in São Paulo city, Brazil. In: 6 IAS Conference on HIV Pathogenesis, Treatment and Prevention.
Auerbach, 1984, Cluster of cases of the acquired immune deficiency syndrome. Patients linked by sexual contact, Am. J. Med., 76, 487, 10.1016/0002-9343(84)90668-5
Bacchetti, 1989, Incubation period of AIDS in San Francisco, Nature, 338, 251, 10.1038/338251a0
Baeten, 2007, HIV-1 subtype D infection is associated with faster disease progression than subtype A in spite of similar plasma HIV-1 loads, J. Infect. Dis., 195, 1177, 10.1086/512682
Bailes, 2003, a, et al. Hybrid origin of SIV in chimpanzees, Science, 300, 1713, 10.1126/science.1080657
Baral, 2007, Elevated risk for HIV infection among men who have sex with men in low- and middle-income countries 2000–2006: a systematic review, PLoS Med., 4, e339, 10.1371/journal.pmed.0040339
Bartholomew, 1987, Transmission of HTLV-I and HIV among homosexual men in Trinidad, J. Am. Med Assoc., 257, 2604, 10.1001/jama.1987.03390190082024
Bastos, 2008, AIDS in Latin America: assessing the current status of the epidemic and the ongoing response, Int. J. Epidemiol., 37, 729, 10.1093/ije/dyn127
Bello, 2007, Demographic history of HIV-1 subtypes B and F in Brazil, Infect. Genet. Evol., 7, 263, 10.1016/j.meegid.2006.11.002
Berry, 2001, Phylogeny and the origin of HIV-1, Nature, 410, 1047, 10.1038/35074176
Beyrer, 2012, Global epidemiology of HIV infection in men who have sex with men, Lancet, 380, 367, 10.1016/S0140-6736(12)60821-6
Beyrer, 2013, The increase in global HIV epidemics in MSM, AIDS, 27, 2665, 10.1097/01.aids.0000432449.30239.fe
Bibollet-Ruche, 2004, New simian immunodeficiency virus infecting De Brazza's monkeys (Cercopithecus neglectus): evidence for a cercopithecus monkey virus clade, J. Virol., 78, 7748, 10.1128/JVI.78.14.7748-7762.2004
Bobkov, 1998, A sudden epidemic of HIV type 1 among injecting drug users in the former Soviet Union: identification of subtype A, subtype B, and novel gagA/envB recombinants, AIDS Res. Hum. Retrovir., 14, 669, 10.1089/aid.1998.14.669
Brenner, 2013, a. Future of phylogeny in HIV prevention, J. Acquir. Immune Defic. Syndr., 63, S248, 10.1097/QAI.0b013e3182986f96
Brown, 1996, HIV type 1 subtypes in Malaysia include B, C, and E, AIDS Res. Hum. Retrovir., 12, 1655, 10.1089/aid.1996.12.1655
Bruhn, 2014, The origin and emergence of an HIV-1 epidemic: from introduction to endemicity, AIDS, 28, 1031, 10.1097/QAD.0000000000000198
Cabello, 2014, Spatiotemporal dynamics of dissemination of non-pandemic HIV-1 subtype B clades in the Caribbean Region, PLoS One, 9, e106045, 10.1371/journal.pone.0106045
Cabello, 2015, Dissemination of nonpandemic Caribbean HIV-1 subtype B clades in Latin America, AIDS, 29, 483, 10.1097/QAD.0000000000000552
Camacho, 2007, Antiretroviral resistance in different HIV-1 subtypes: impact on therapy outcomes and resistance testing interpretation, Curr. Opin. HIV Aids., 2, 123, 10.1097/COH.0b013e328029824a
Carr J.K., Foley B.T., Leitner T., Salminen M., Korber B., McCutchan F., 1998. Reference sequences representing the principal genetic diversity of HIV-1 in the pandemic. Hum retroviruses AIDS. Theoretical Biology and Biophysics Group, Los Alamos, NM, pp. 10–19.
Casado, 2000, Different distribution of HIV type 1 genetic variants in European patients with distinct risk practices, AIDS Res. Hum. Retrovir., 16, 299, 10.1089/088922200309403
Casseb, 2004, Human immunodeficiency virus type 1 Brazilian subtype B variant showed an increasing avidity of the anti-V3 antibodies over time compared to the subtype B US/European strain in São Paulo, Brazil, Mem. Inst. Oswaldo Cruz, 99, 69, 10.1590/S0074-02762004000100012
Casseb, 1998, Two variants of HIV-1 B serotype are transmitted heterosexually in São Paulo, Brazil, Braz. J. Med Biol. Res., 31, 1243, 10.1590/S0100-879X1998001000002
Casseb, 2002, HIV disease progression: is the Brazilian variant subtype B′ (GWGR motif) less pathogenic than US/European subtype B (GPGR)?, Int. J. Infect. Dis., 6, 164, 10.1016/S1201-9712(02)90105-0
Cassol, 1996, Detection of HIV type 1 env subtypes A, B, C, and E in Asia using dried blood spots: a new surveillance tool for molecular epidemiology, AIDS Res. Hum. Retrovir., 12, 1435, 10.1089/aid.1996.12.1435
Centers for Disease Control, 1982, Opportunistic infections and Kaposi's Sarcoma among Haitians in the United States, MMWR Morb. Mortal. Wkly. Rep.
Charneau, 1994, Isolation and envelope sequence of a highly divergent HIV-1 isolate: definition of a new HIV-1 group, Virology, 205, 247, 10.1006/viro.1994.1640
Chen, 1999, HIV type 1 subtypes in Guangxi Province, China, 1996, AIDS Res. Hum. Retrovir., 15, 81, 10.1089/088922299311754
Chen, 2011, Phylodynamics of HIV-1 subtype B among the men-having-sex-with-men (MSM) population in Hong Kong, PLoS One, 6, e25286, 10.1371/journal.pone.0025286
Chibo, 2012, Increasing diversity of human immunodeficiency virus type 1 subtypes circulating in Australia, AIDS Res. Hum. Retrovir., 28, 578, 10.1089/aid.2011.0200
Chow, 2012, Genome sequences of a novel HIV-1 CRF53_01B identified in Malaysia, J. Virol., 86, 11398, 10.1128/JVI.01932-12
1984, The Cambridge History of Africa (Internet)
Chow, 2014, A newly emerging HIV-1 recombinant lineage (CRF58_01B) disseminating among people who inject drugs in Malaysia, PLoS One, 9, e85250, 10.1371/journal.pone.0085250
Cleghorn, 1995, HIV-1 prevalence and risk factors among sexually transmitted disease clinic attenders in Trinidad, AIDS, 9, 389, 10.1097/00002030-199509040-00011
Cleghorn, 2000, A distinctive clade B HIV type 1 is heterosexually transmitted in Trinidad and Tobago, Proc. Natl. Acad. Sci. USA, 97, 10532, 10.1073/pnas.97.19.10532
Coffin, 1986, What to call the AIDS virus?, Nature, 321, 10, 10.1038/321010a0
Cohen, 2006, HIV/AIDS: Latin America & Caribbean. HAITI: making headway under hellacious circumstances, Science (80-), 313, 470
Collins-Fairclough, 2011, Significantly longer envelope V2 loops are characteristic of heterosexually transmitted subtype B HIV-1 in Trinidad, PLoS One, 6, e19995, 10.1371/journal.pone.0019995
Compton, 2013, Host gene evolution traces the evolutionary history of ancient primate lentiviruses, Philos. Trans. R. Soc. Lond. B Biol. Sci., 368, 20120496, 10.1098/rstb.2012.0496
Covas, 1998, High frequency of the GWG (Pro Trp) envelope variant of HIV-1 in Southeast Brazil, J. Acquir. Immune Defic. Syndr. Hum. Retrovirol., 19, 74, 10.1097/00042560-199809010-00012
Cuevas, 2002, High HIV-1 genetic diversity in Cuba, AIDS, 16, 1643, 10.1097/00002030-200208160-00010
D’arc, 2015, Origin of the HIV-1 group O epidemic in western lowland gorillas, Proc. Natl. Acad. Sci. USA, 201502022
Daniels, 2003, An HIV type 1 subtype B founder effect in Korea: gp160 signature patterns infer circulation of CTL-escape strains at the population level, AIDS Res. Hum. Retrovir., 19, 631, 10.1089/088922203322280847
De Boni, 2014, Epidemiology of HIV in Latin America and the Caribbean, Curr. Opin. HIV AIDS, 9, 192, 10.1097/COH.0000000000000031
De Brito, 2006, Women infected with HIV Type 1 Brazilian variant, subtype B (B -GWGR Motif) have slower progression to AIDS, compared with patients infected with subtype B (B-GPGR Motif), Clin Infect Dis., 43, 0, 10.1086/508875
Delatorre, 2013, Phylodynamics of the HIV-1 epidemic in Cuba, PLoS One, 8, e72448, 10.1371/journal.pone.0072448
Delaugerre, 2011, HIV-1 group N: travelling beyond Cameroon, Lancet, 378, 1894, 10.1016/S0140-6736(11)61457-8
Deng, 2008, The epidemic origin and molecular properties of B′: a founder strain of the HIV-1 transmission in Asia, AIDS, 22, 1851, 10.1097/QAD.0b013e32830f4c62
Deschamps, 1996, Heterosexual Transmission of HIV in Haiti, Ann. Intern. Med., 125, 324, 10.7326/0003-4819-125-4-199608150-00011
Diaz, 2008, Selective regimes and evolutionary rates of HIV-1 subtype B V3 variants in the Brazilian epidemic, Virology, 381, 184, 10.1016/j.virol.2008.08.014
Faria, 2014, The early spread and epidemic ignition of HIV-1 in human populations, Science, 346, 56, 10.1126/science.1256739
Feng, 2014, Identification of a novel HIV Type 1 circulating recombinant form (CRF65_cpx) composed of CRF01_AE and subtypes B and C in Western Yunnan, China, AIDS Res. Hum. Retrovir., 30, 598, 10.1089/aid.2013.0233
Figueroa, 2008, The HIV epidemic in the Caribbean: meeting the challenges of achieving universal access to prevention, treatment and care, West Indian Med J., 57, 195
Franca, 2011, Genotypic characteristics of HIV type 1 based on gp120 hypervariable region 3 of isolates from Southern Brazil, AIDS Res. Hum. Retrovir., 27, 903, 10.1089/aid.2010.0266
Gürtler, 1996, HIV-1 subtype O: epidemiology, pathogenesis, diagnosis, and perspectives of the evolution of HIV, Arch. Virol. Suppl., 11, 195
Gao, 1999, Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes, Nature, 397, 436, 10.1038/17130
Georges-Courbot, 1998, Natural infection of a household pet red-capped mangabey (Cercocebus torquatus torquatus) with a new simian immunodeficiency virus, J. Virol., 72, 600, 10.1128/JVI.72.1.600-608.1998
GHO, 2013. Global Health Observatory Data.
Gilbert, 2007, The emergence of HIV/AIDS in the Americas and beyond, Proc. Natl. Acad. Sci. USA, 104, 18566, 10.1073/pnas.0705329104
Glauser, 1984, Clinical and epidemiological survey of acquired immune deficiency syndrome in Europe, Eur. J. Clin. Microbiol., 3, 55, 10.1007/BF02032823
Gottlieb, 1981, Pneumocystis carinii pneumonia and mucosal candidiasis in previously healthy homosexual men: evidence of a new acquired cellular immunodeficiency, N. Engl. J. Med., 305, 1425, 10.1056/NEJM198112103052401
Hahn, 2000, AIDS as a zoonosis: scientific and public health implications, Science, 287, 607, 10.1126/science.287.5453.607
Han, 2013, High prevalence of HIV-1 intersubtype B’/C recombinants among injecting drug users in Dehong, China, PLoS One, 8, e65337, 10.1371/journal.pone.0065337
Hawke, 2013, HIV non-B subtype distribution: emerging trends and risk factors for imported and local infections newly diagnosed in South Australia, AIDS Res. Hum. Retrovir., 29, 311, 10.1089/aid.2012.0082
Heeney, 2006, Origins of HIV and the evolution of resistance to AIDS, Science (80-), 313, 462, 10.1126/science.1123016
Hemelaar, 2012, The origin and diversity of the HIV-1 pandemic, Trends Mol. Med., 18, 182, 10.1016/j.molmed.2011.12.001
Hemelaar, 2011, Global trends in molecular epidemiology of HIV-1 during 2000–2007, AIDS, 25, 679, 10.1097/QAD.0b013e328342ff93
Herek, 2002, HIV-related stigma and knowledge in the United States: prevalence and trends, 1991–1999, Am. J. Public Health, 92, 371, 10.2105/AJPH.92.3.371
Herrmann, 2016, SAMHD1 in retroviral restriction and innate immune sensing – should we leash the hound?, Curr. HIV Res., 14, 225, 10.2174/1570162X14999160224102515
HIV/AIDS Surveillance in Europe, 1998, European Center for the Epidemiological Monitoring of AIDS, Q Rep., 59
Ho, 2002, The HIV-1 vaccine race, Cell, 110, 135, 10.1016/S0092-8674(02)00832-2
Holmes, 2007, When HIV spread afar, Proc. Natl. Acad. Sci. USA, 104, 18351, 10.1073/pnas.0709179104
Holmes, 1995, The molecular epidemiology of human immunodeficiency virus type 1 in Edinburgh, J. Infect. Dis., 171, 45, 10.1093/infdis/171.1.45
Hu, 1999, What role does HIV-1 subtype play in transmission and pathogenesis? An epidemiological perspective, AIDS, 13, 873, 10.1097/00002030-199905280-00002
Junqueira, 2013, Detection of the B"-GWGR variant in the southernmost region of Brazil: unveiling the complexity of the human immunodeficiency virus-1 subtype B epidemic, Mem. Inst. Oswaldo Cruz., 108, 735, 10.1590/0074-0276108062013010
Junqueira, 2011, Reviewing the history of HIV-1: spread of subtype B in the Americas, PLoS One, 6, e27489, 10.1371/journal.pone.0027489
Kaleebu, 2002, Effect of human immunodeficiency virus (HIV) type 1 envelope subtypes A and D on disease progression in a large cohort of HIV-1-positive persons in Uganda, J. Infect. Dis., 185, 1244, 10.1086/340130
Kalish, 1995, The evolving molecular epidemiology of HIV-1 envelope subtypes in injecting drug users in Bangkok, Thailand: implications for HIV vaccine trials, AIDS, 9, 851, 10.1097/00002030-199508000-00004
Kalish, 2004, Recombinant viruses and early global HIV-1 epidemic, Emerg. Infect. Dis., 10, 1227
Kalish, 2005, Central African hunters exposed to simian immunodeficiency virus, Emerg. Infect. Dis., 11, 1928, 10.3201/eid1112.050394
Kanki, 1999, Human Immunodeficiency virus type 1 subtypes differ in disease progression, J. Infect. Dis., 179, 68, 10.1086/314557
Kato, 2003, Differential prevalence of HIV type 1 subtype B and CRF01_AE among different sexual transmission groups in Tokyo, Japan, as revealed by subtype-specific PCR, AIDS Res. Hum. Retrovir., 19, 1057, 10.1089/088922203322588431
KCDC, 2007. Korea Center for Disease Control and Prevention – Periodical Report. Seoul.
Keele, 2006, Chimpanzee reservoirs of pandemic and nonpandemic HIV-1, Science (80-), 313, 523, 10.1126/science.1126531
Kijak, 2007, Distinguishing molecular forms of HIV-1 in Asia with a high-throughput, fluorescent genotyping assay, MHAbce v.2, Virology, 358, 178, 10.1016/j.virol.2006.07.055
Kim, 1999, Characterization of V3 loop sequences from HIV type 1 subtype B in South Korea: predominance of the GPGS motif, AIDS Res. Hum. Retrovir., 15, 681, 10.1089/088922299310999
Kim, 2008, National survey of prevalent HIV strains: limited genetic variation of Korean HIV-1 clade B within the population of Korean men who have sex with men, J. Acquir. Immune Defic. Syndr., 48, 127, 10.1097/QAI.0b013e31816b6ae6
Kim, 2012, Estimating the origin and evolution characteristics for Korean HIV type 1 subtype B using bayesian phylogenetic analysis, AIDS Res. Hum. Retrovir., 28, 880, 10.1089/aid.2011.0267
Kim, 2003, Monophyletic clade of HIV-1 subtype B in Korea: evolutionary pressure or single introduction?, AIDS Res. Hum. Retrovir., 19, 619, 10.1089/088922203322230996
Kim, 1999, Molecular phylogenetic analysis of human immunodeficiency virus type 1 strains obtained from Korean patients: env gene sequences, AIDS Res. Hum. Retrovir., 15, 303, 10.1089/088922299311493
Kluge S.F., Mack K., Iyer S.S., Pujol F.M., Heigele A., Learn G.H., et al., 2014. NIH Public Access., vol. 16, pp. 639–650.
Kondo, 2013, Emergence in Japan of an HIV-1 variant associated with transmission among men who have sex with men (MSM) in China: first indication of the International Dissemination of the Chinese MSM lineage, J. Virol., 87, 5351, 10.1128/JVI.02370-12
Kuiken, 2000, Genetic analysis reveals epidemiologic patterns in the spread of human immunodeficiency virus, Am. J. Epidemiol., 152, 814, 10.1093/aje/152.9.814
Kusagawa, 1998, Genetic and serologic characterization of HIV type 1 prevailing in Myanmar (Burma), AIDS Res. Hum. Retrovir., 14, 1379, 10.1089/aid.1998.14.1379
Laverdiere, 1983, AIDS in Haitian immigrants and in a Caucasian woman closely associated with Haitians, Can. Med. Assoc. J., 129, 1209
Leal, 2010, Diversity of HIV-1 subtype B: implications to the origin of BF recombinants, PLoS One, 5, e11833, 10.1371/journal.pone.0011833
Leal, 2008, Molecular and structural characterization of HIV-1 subtype B Brazilian isolates with GWGR tetramer at the tip of the V3-loop, Virology, 381, 222, 10.1016/j.virol.2008.08.029
Leitner T., 1996. Genetic subtypes of HIV-1. In: Myers, G., Foley, B., Mellors, J.W., Korber, B., Jeang, K.T., Wain-Hobson S., (eds.) Human Retroviruses and AIDS. Theor Biol Biophys Los Alamos Natl Lab Los Alamos, pp. III28–40.
Lemey, 2006, HIV evolutionary dynamics within and among hosts, AIDS Rev., 8, 125
Li, 2013, Genome sequences of a novel HIV-1 circulating recombinant form (CRF61_BC) identified among heterosexuals in China, Genome Announc., 1
Li, 2010, Identification of a novel second-generation circulating recombinant form (CRF48_01B) in Malaysia: a descendant of the previously identified CRF33_01B, J. Acquir. Immune Defic. Syndr., 54, 129, 10.1097/QAI.0b013e3181d82ce5
Li, 2010, Explosive HIV-1 subtype B′ epidemics in Asia driven by geographic and risk group founder events, Virology, 402, 223, 10.1016/j.virol.2010.03.048
Li, 2012, Tracing the origin and history of HIV-1 subtype B’ epidemic by near full-length genome analyses, AIDS, 26, 877, 10.1097/QAD.0b013e328351430d
Liebert, 2000, Different distribution of HIV type 1 genetic variants in European patients with distinct risk practices, AIDS Res. Hum. Retrovir., 16, 299, 10.1089/088922200309403
Lihana, 2012, Update on HIV-1 diversity in Africa: a decade in review, AIDS Rev., 14, 83
Liu, 2012, Identification of a novel HIV type 1 circulating recombinant form (CRF52_01B) in Southeast Asia, AIDS Res. Hum. Retrovir., 28, 1357, 10.1089/aid.2011.0376
Louwagie, 1994, Genetic analysis of HIV-1 isolates from Brazil reveals presence of two distinct genetic subtypes, AIDS Res. Hum. Retrovir., 10, 561, 10.1089/aid.1994.10.561
Lukashov, 1996, Evidence for HIV type 1 strains of U.S. intravenous drug users as founders of AIDS epidemic among intravenous drug users in Northern Europe, AIDS Res. Hum. Retrovir., 12, 1179, 10.1089/aid.1996.12.1179
Malebranche, 1983, Acquired Immunodeficiency syndrome with severe gastrointestinal manifestaions in Haiti, Lancet, 322, 873, 10.1016/S0140-6736(83)90868-1
Masur, 1981, An outbreak of community-acquired Pneumocystis carinii pneumonia: initial manifestation of cellular immune dysfunction, N. Engl. J. Med., 305, 1431, 10.1056/NEJM198112103052402
Mendoza, 2014, Human Immunodeficiency Virus type 1 (HIV-1) subtype B epidemic in Panama is mainly driven by dissemination of country-specific clades, PLoS One, 9
Mir, 2015, Phylodynamics of major HIV-1 subtype B pandemic clades circulating in Latin America, AIDS, 29, 1863, 10.1097/QAD.0000000000000770
Morgado, 1994, V3 region polymorphisms in HIV-1 from Brazil: prevalence of subtype B strains divergent from North American/European prototype and detection of subtype F, AIDS Res. Hum. Retrovir., 10, 569, 10.1089/aid.1994.10.569
Morgado, 1998, Molecular epidemiology of HIV in Brazil: polymorphism of the antigenically distinct HIV-1 B subtype strains. The Hospital Evandro Chagas AIDS Clinical Research Group, Mem. Inst. Oswaldo Cruz., 93, 383, 10.1590/S0074-02761998000300020
Murillo, 2013, A single early introduction of HIV-1 subtype B into Central America accounts for most current cases, J. Virol., 7463, 10.1128/JVI.01602-12
Murphy, 1988, Human immunodeficiency virus and human T-lymphotropic virus type I infection among homosexual men in Kingston, Jamaica, J. Acquir. Immune Defic. Syndr., 1, 143
Nabatov, 2002, Simultaneous introduction of HIV type 1 subtype A and B viruses into injecting drug users in southern Ukraine at the beginning of the epidemic in the former Soviet Union, AIDS Res. Hum. Retrovir., 18, 891, 10.1089/08892220260190380
Nadai, 2009, HIV-1 epidemic in the Caribbean is dominated by subtype B, PLoS One, 4, e4814, 10.1371/journal.pone.0004814
National Centre in HIV Epidemiology and Clinical Research, 2002, The national HIV database, Aust. HIV Surv. Rep., 1
Nau, 2009, A new human immunodeficiency virus derived from gorillas, Rev. Med. Suisse, 5, 1741
Neil, 2008, Tetherin inhibits retrovirus release and is antagonized by HIV-1 Vpu, Nature, 451, 425, 10.1038/nature06553
Nelson, 2003, An open-label study of tenofovir in HIV-1 and Hepatitis B virus co-infected individuals, AIDS, 17, F7, 10.1097/00002030-200301030-00002
Ng, 2012, Genome sequence of a novel HIV-1 circulating recombinant form 54_01B from Malaysia, J. Virol., 86, 11405, 10.1128/JVI.01949-12
Ng, 2013, Evolutionary history of HIV-1 subtype B and CRF01_AE transmission clusters among men who have sex with men (MSM) in Kuala Lumpur, Malaysia, PLoS One, 8, e67286, 10.1371/journal.pone.0067286
Noel, 1988, Another case of AIDS in the pre-AIDS era, Rev. Infect. Dis., 10, 668, 10.1093/clinids/10.3.668-a
Noel, 2003, Phylogenetic relationships between Puerto Rico and continental USA HIV-1 pol sequences: a shared HIV-1 infection, Cell Mol. Biol., 49, 1193
Oguntibeju, 2003, The HIV Epidemic : factors responsible for the epidemic and the impact of HIV/AIDS, RMJ, 1
Osmanov, 2000, Estimated global distribution and regional spread of HIV-1 genetic subtypes in the year, J. Acquir. Immune Defic. Syndr., 29, 184, 10.1097/00042560-200202010-00013
Ou, 1993, Independent introduction of two major HIV-1 genotypes into distinct high-risk populations in Thailand, Lancet, 341, 1171, 10.1016/0140-6736(93)91001-3
Pérez, 2006, HIV Type 1 molecular epidemiology in cuba: high genetic diversity, frequent mosaicism, and recent expansion of BG intersubtype recombinant forms, AIDS Res. Hum. Retrovir., 22, 724, 10.1089/aid.2006.22.724
Pagán, 2013, Reconstructing the timing and dispersion routes of HIV-1 subtype B epidemics in The Caribbean and Central America: a phylogenetic story, PLoS One, 8, e69218, 10.1371/journal.pone.0069218
Pape, 1993, AIDS in Haiti: 1982–1992, Clin. Infect. Dis., 17, S341, 10.1093/clinids/17.Supplement_2.S341
Pape, 1983, Characteristics of the acquired immunodeficiency syndrome (AIDS) in Haiti, N. Engl. J. Med., 309, 945, 10.1056/NEJM198310203091603
Pape, 2008, The epidemiology of AIDS in Haiti refutes the claims of Gilbert et al., Proc. Natl. Acad. Sci. USA, 105, E13, 10.1073/pnas.0711141105
Paraskevis, 2009, Tracing the HIV-1 subtype B mobility in Europe: a phylogeographic approach, Retrovirology, 6, 49, 10.1186/1742-4690-6-49
Parkin, 2004, Antiretroviral drug resistance in non-subtype B HIV-1, HIV-2 and SIV, Antivir. Ther., 9, 3, 10.1177/135965350400900112
Pepin, 2011
Perelson, 1996, HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time, Science, 271, 1582, 10.1126/science.271.5255.1582
Perrin, 2003, Travel and the spread of HIV-1 genetic variants, Lancet Infect. Dis., 3, 22, 10.1016/S1473-3099(03)00484-5
Pinto, 2008, A molecular study on the evolution of a subtype B variant frequently found in Brazil, Genet. Mol. Res., 7, 1031, 10.4238/vol7-4gmr383
Piot, 1984, Acquired immunodeficiency syndrome in a heterosexual population in Zaire, Lancet, 324, 65, 10.1016/S0140-6736(84)90241-1
Pitchenik, 1983, Opportunistic infections and Kaposi’s sarcoma among haitians: evidence of a new acquired immunodeficiency state, Ann. Intern. Med., 98, 277, 10.7326/0003-4819-98-3-277
Piyasirisilp, 2000, A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant, J. Virol., 74, 11286, 10.1128/JVI.74.23.11286-11295.2000
Potts, 1993, Genetic heterogeneity of the V3 region of the HIV-1 envelope glycoprotein in Brazil. Brazilian Collaborative AIDS Research Group, AIDS, 7, 1191, 10.1097/00002030-199309000-00007
Preston, 1988, Fidelity of HIV-1 reverse transcriptase, Science, 242, 1168, 10.1126/science.2460924
Prusiner, 2002, Historical essay. Discovering the cause of AIDS, Science, 298, 1726, 10.1126/science.1079874
Rambaut, 2004, The causes and consequences of HIV evolution, Nat. Rev. Genet., 5, 52, 10.1038/nrg1246
Renjifo, 2004, Preferential in-utero transmission of HIV-1 subtype C as compared to HIV-1 subtype A or D, AIDS, 18, 1629, 10.1097/01.aids.0000131392.68597.34
Respess, 1999, Impact of HIV type 1 subtype variation on viral RNA quantitation, AIDS Res. Hum. Retrovir., 15, 133, 10.1089/088922299311556
Robbins, 2003, U.S. human immunodeficiency virus type 1 epidemic : date of origin, population history, and characterization of early strains, J. Virol., 77, 6359, 10.1128/JVI.77.11.6359-6366.2003
Sanchez, 2009, High HIV and ulcerative sexually transmitted infection incidence estimates among men who have sex with men in Peru: awaiting for an effective preventive intervention, J. Acquir. Immune Defic. Syndr., 51, S47, 10.1097/QAI.0b013e3181a2671d
Santoro-lopes, 2000, HIV disease progression and V3 serotypes in Brazil: is B different from B-Br?, AIDS Res. Hum. Retrovir., 16, 953, 10.1089/08892220050058362
Santos, 2008, Conservation patterns of HIV-1 RT connection and RNase H domains: identification of new mutations in NRTI-treated patients, PLoS One, 3, e1781, 10.1371/journal.pone.0001781
Sauter, 2012, Human tetherin exerts strong selection pressure on the HIV-1 group N Vpu protein, PLoS Pathog., 8
Selik, 1984, Acquired immune deficiency syndrome (AIDS) trends in the United States, 1978–1982, Am. J. Med., 76, 493, 10.1016/0002-9343(84)90669-7
Shimizu, 1992, Six strains of human immunodeficiency virus type 1 isolated in Japan and their molecular phylogeny, J. Mol. Evol., 35, 329, 10.1007/BF00161170
Simon, 1998, Identification of a new human immunodeficiency virus type 1 distinct from group M and group O, Nat. Med., 4, 1032, 10.1038/2017
Spira, 2003, Impact of clade diversity on HIV-1 virulence, antiretroviral drug sensitivity and drug resistance, J. Antimicrob. Chemother., 51, 229, 10.1093/jac/dkg079
Stengers, J., 2005. In: Editions, R., Lannoo, R. (Eds.), Congo: Mythes et réalités, Brussels., Racine, Belgium.
Strebel, 2009, Human cellular restriction factors that target HIV-1 replication, BMC Med., 7, 48, 10.1186/1741-7015-7-48
Su, 2000, Characterization of a virtually full-length human immunodeficiency virus type 1 genome of a prevalent intersubtype (C/B’) recombinant strain in China, J. Virol., 74, 11367, 10.1128/JVI.74.23.11367-11376.2000
Takebe, 2003, High prevalence of diverse forms of HIV-1 intersubtype recombinants in Central Myanmar: geographical hot spot of extensive recombination, AIDS, 17, 2077, 10.1097/00002030-200309260-00009
Takebe, 2014, Intercontinental dispersal of HIV-1 subtype B associated with transmission among men who have sex with men in Japan, J. Virol., 88, 9864, 10.1128/JVI.01354-14
Taylor, 2008, D P. The challenge of HIV-1 subtype diversity, N. Engl. J. Med., 359, 1965, 10.1056/NEJMc086373
Tebit, 2011, Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease, Lancet Infect. Dis., 11, 45, 10.1016/S1473-3099(10)70186-9
Tee, 2005, The evolving molecular epidemiology of HIV type 1 among injecting drug users (IDUs) in Malaysia, AIDS Res. Hum. Retrovir., 21, 1046, 10.1089/aid.2005.21.1046
Tee, 2006, Identification of a novel circulating recombinant form (CRF33_01B) disseminating widely among various risk populations in Kuala Lumpur, Malaysia, J. Acquir. Immune Defic. Syndr., 43, 523, 10.1097/01.qai.0000242451.74779.a7
Thomas, 1988, HIV infection in heterosexual female intravenous drug users in New York City, 1977–1980, N. Engl. J. Med., 319, 374, 10.1056/NEJM198808113190616
Tovanabutra, 2003, A new circulating recombinant form, CRF15_01B, reinforces the linkage between IDU and heterosexual epidemics in Thailand, AIDS Res. Hum. Retrovir., 19, 561, 10.1089/088922203322230923
Tovanabutra, 2007, Identification of CRF34_01B, a second circulating recombinant form unrelated to and more complex than CRF15_01B, among injecting drug users in northern Thailand, AIDS Res. Hum. Retrovir., 23, 829, 10.1089/aid.2006.0300
UNAIDS, 2011. World AIDS Day Report [Internet]. Available: 〈http://www.unaids.org/sites/default/files/media_asset/JC2216_WorldAIDSday_report_2011_en_1.pdf〉
UNAIDS, 2012. Report on the global AIDS epidemic [Internet]. Available: http://www.unaids.org/en/resources/documents/2012/20121120_UNAIDS_Global_Report_2012
UNAIDS, 2013. Report on the global AIDS epidemic [Internet]. Available: 〈http://www.unaids.org/en/media/unaids/contentassets/documents/epidemiology/2013/gr2013/UNAIDS_Global_Report_2013_en.pdf〉
UNAIDS, 2015. Global AIDS Response Progress Reporting. Available: 〈http://www.unaids.org/sites/default/files/media_asset/JC2702_GARPR2015guidelines_en.pdf〉
Vallari, 2010, Confirmation of putative HIV-1 group P in Cameroon, J. Virol., 85, 1403, 10.1128/JVI.02005-10
van Griensven, 2009, The global epidemic of HIV infection among men who have sex with men, Curr. Opin. HIV AIDS, 4, 300, 10.1097/COH.0b013e32832c3bb3
Vidal, 2000, Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa, J. Virol., 74, 10498, 10.1128/JVI.74.22.10498-10507.2000
Walker, 2001, Immune control of HIV: the obstacles of HLA and viral diversity, Nat. Immunol., 2, 473, 10.1038/88656
Wang, 2007, Complex patterns of the HIV-1 epidemic in Kuala Lumpur, Malaysia: evidence for expansion of circulating recombinant form CRF33_01B and detection of multiple other recombinants, Virology, 367, 288, 10.1016/j.virol.2007.05.033
Wang, 2011, The dynamic face of HIV-1 subtypes among men who have sex with men in Beijing, China, Curr. HIV Res., 9, 136, 10.2174/157016211795569096
Wei, 2014, Identification of a novel HIV-1 circulating recombinant form (CRF62_BC) in western Yunnan of China, AIDS Res. Hum. Retrovir., 30, 380, 10.1089/aid.2013.0235
Wheeler, 1994, HIV infection in the Caribbean, Int. J. STD Aids., 5, 79, 10.1177/095646249400500201
Wolfe, 2004, Naturally acquired simian retrovirus infections in central African hunters, Lancet, 363, 932, 10.1016/S0140-6736(04)15787-5
Worobey, 2008, Reply to Pape et al.: the phylogeography of HIV-1 group M subtype B, Proc. Natl. Acad. Sci. USA, 105, E16, 10.1073/pnas.0712128105
Worobey, 1960, Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960, Nature, 455, 661, 10.1038/nature07390
Worobey M., Santiago M.L., 2004 Contaminated Polio Vaccine Theory Refuted, vol. 428, 2004.
Yamaguchi, 2000, Identification of a new HIV-2 subtype based on phylogenetic analysis of full-length genomic sequence, AIDS Res. Hum. Retrovir., 16, 925, 10.1089/08892220050042864
Yang, 2002, On-going generation of multiple forms of HIV-1 intersubtype recombinants in the Yunnan Province of China, AIDS, 16, 1401, 10.1097/00002030-200207050-00012
Ye, 2014, Phylogenetic and temporal dynamics of human immunodeficiency virus type 1B in China: four types of B strains circulate in China, AIDS Res. Hum. Retrovir., 30, 920, 10.1089/aid.2014.0074
Zhang, 2004, Molecular characterization of human immunodeficiency virus type 1 and hepatitis C virus in paid blood donors and injection drug users in china, J. Virol., 78, 13591, 10.1128/JVI.78.24.13591-13599.2004