Forensic characteristics and phylogenetic analysis of both Y-STR and Y-SNP in the Li and Han ethnic groups from Hainan Island of China

Forensic Science International: Genetics - Tập 39 - Trang e14-e20 - 2019
Mengyuan Song1, Zheng Wang1, Yaqing Zhang2, Chenxi Zhao3, Min Lang1, Mingkun Xie1, Xiaoqin Qian1, Mengge Wang1, Yiping Hou1
1Institute of Forensic Medicine, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, 610041, China
2Hainan Provincial Blood Center, Haikou, 570311, China
3College of Computer Science, Sichuan University, Chengdu 610065, China

Tài liệu tham khảo

Li, 2010, Genetic origin of Kadai-speaking Gelong people on Hainan island viewed from Y chromosomes, J. Hum. Genet., 55, 462, 10.1038/jhg.2010.50 Peng, 2011, Tracing the legacy of the early Hainan Islanders–a perspective from mitochondrial DNA, BMC Evol. Biol., 11, 46, 10.1186/1471-2148-11-46 Yew, 2018, Genomic structure of the native inhabitants of Peninsular Malaysia and North Borneo suggests complex human population history in Southeast Asia, Hum. Genet., 137, 161, 10.1007/s00439-018-1869-0 Jin, 2000, Natives or immigrants: modern human origin in East Asia, Nat. Rev. Genet., 1, 126, 10.1038/35038565 Lipson, 2018, Ancient genomes document multiple waves of migration in Southeast Asian prehistory, Science, 10.1126/science.aat3188 Scozzari, 1997, Differential structuring of human populations for homologous X and Y microsatellite loci, Am. J. Hum. Genet., 61, 719, 10.1086/515500 Xue, 2006, Male demography in East Asia: a north-south contrast in human population expansion times, Genetics, 172, 2431, 10.1534/genetics.105.054270 Li, 2008, Paternal genetic structure of Hainan aborigines isolated at the entrance to East Asia, PLoS One, 3, e2168, 10.1371/journal.pone.0002168 Li, 2008, Paternal genetic affinity between Western Austronesians and Daic populations, BMC Evol. Biol., 8, 146, 10.1186/1471-2148-8-146 Fan, 2018, Population analysis of 27 Y-chromosomal STRs in the Li ethnic minority from Hainan province, southernmost China, Forensic science international, Genetics, 34, e20 Kayser, 2017, Forensic use of Y-chromosome DNA: a general overview, Hum. Genet., 136, 621, 10.1007/s00439-017-1776-9 Qian, 2017, Next generation sequencing plus (NGS+) with Y-chromosomal markers for forensic pedigree searches, Sci. Rep., 7, 11324, 10.1038/s41598-017-11955-x Wang, 2017, Forensic characteristics and phylogenetic analysis of two Han populations from the southern coastal regions of China using 27 Y-STR loci, Forensic science international, Genetics, 31, e17 Ralf, 2015, Simultaneous analysis of hundreds of Y-chromosomal SNPs for high-resolution paternal lineage classification using targeted semiconductor sequencing, Hum. Mutat., 36, 151, 10.1002/humu.22713 Kang, 2012, Y-chromosome O3 haplogroup diversity in Sino-Tibetan populations reveals two migration routes into the eastern Himalayas, Ann. Hum. Genet., 76, 92, 10.1111/j.1469-1809.2011.00690.x Nei, 1981, DNA polymorphism detectable by restriction endonucleases, Genetics, 97, 145, 10.1093/genetics/97.1.145 Bandelt, 1999, Median-joining networks for inferring intraspecific phylogenies, Mol. Biol. Evol., 16, 37, 10.1093/oxfordjournals.molbev.a026036 Li, 2013, Substitution of Hainan indigenous genetic lineage in the Utsat people, exiles of the Champa kingdom, J. Syst. Evol., 51, 287, 10.1111/jse.12000 Gusmao, 2006, D.N.A.C.o.t.I.S.o.F. Genetics, DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis, Forensic Sci. Int., 157, 187, 10.1016/j.forsciint.2005.04.002 Gusmao, 2017, Revised guidelines for the publication of genetic population data, Forensic science international, Genetics, 30, 160 van Oven, 2014, Seeing the wood for the trees: a minimal reference phylogeny for the human Y chromosome, Hum. Mutat., 35, 187, 10.1002/humu.22468 Ballantyne, 2010, Mutability of Y-chromosomal microsatellites: rates, characteristics, molecular bases, and forensic implications, Am. J. Hum. Genet., 87, 341, 10.1016/j.ajhg.2010.08.006 Marino, 2007, Genetic attributes of the YHRD minimal haplotype in 10 provinces of Argentina, Forensic science international, Genetics, 1, 129 Mulero, 2006, Development and validation of the AmpFlSTR Yfiler PCR amplification kit: a male specific, single amplification 17 Y-STR multiplex system, J. Forensic Sci., 51, 64, 10.1111/j.1556-4029.2005.00016.x Pereira, 2002, Mismatch distribution analysis of Y-STR haplotypes as a tool for the evaluation of identity-by-state proportions and significance of matches–the European picture, Forensic Sci. Int., 130, 147, 10.1016/S0379-0738(02)00371-7