The 3′-untranslated region directs ribosomal protein-encoding mRNAs to specific cytoplasmic regions

Jansen, 2001, mRNA localization: message on the move, Nat. Rev., Mol. Cell. Biol., 2, 247, 10.1038/35067016 St Johnston, 1992, The origin of pattern and polarity in the Drosophila embryo, Cell, 68, 201, 10.1016/0092-8674(92)90466-P Melton, 1989, Localization of mRNA and axis formation during Xenopus embryogenesis, Ciba Found. Symp., 144, 16 Job, 2001, Localization and translation of mRNA in dendrites and axons, Nat. Rev., Neurosci., 2, 889, 10.1038/35104069 Hesketh, 1994, Targeting of c-myc and beta-globin coding sequences to cytoskeletal-bound polysomes by c-myc 3′ untranslated region, Biochem. J., 298, 143, 10.1042/bj2980143 Sylvestre, 2003, The role of the 3′ untranslated region in mRNA sorting to the vicinity of mitochondria is conserved from yeast to human cells, Mol. Biol. Cell, 14, 3848, 10.1091/mbc.E03-02-0074 Levadoux, 1999, Nuclear import of metallothionein requires its mRNA to be associated with the perinuclear cytoskeleton, J. Biol. Chem., 274, 34961, 10.1074/jbc.274.49.34961 Corral-Debrinski, 2000, In yeast, the 3′ untranslated region or the presequence of ATM1 is required for the exclusive localization of its mRNA to the vicinity of mitochondria, Mol. Cell. Biol., 20, 7881, 10.1128/MCB.20.21.7881-7892.2000 Kloc, 2002, Mechanisms of subcellular mRNA localization, Cell, 108, 533, 10.1016/S0092-8674(02)00651-7 Lopez de Heredia, 2004, mRNA localization and the cytoskeleton, Curr. Opin. Cell Biol., 16, 80, 10.1016/j.ceb.2003.11.002 Palacios, 2001, Getting the message across: the intracellular localization of mRNAs in higher eukaryotes, Annu. Rev. Cell Dev. Biol., 17, 569, 10.1146/annurev.cellbio.17.1.569 Yisraeli, 1990, A two-step model for the localization of maternal mRNA in Xenopus oocytes: involvement of microtubules and microfilaments in the translocation and anchoring of Vg1 mRNA, Development, 108, 289, 10.1242/dev.108.2.289 Lall, 1999, Squid hnRNP protein promotes apical cytoplasmic transport and localization of Drosophila pair-rule transcripts, Cell, 98, 171, 10.1016/S0092-8674(00)81012-0 Bassell, 1998, Sorting of beta-actin mRNA and protein to neurites and growth cones in culture, J. Neurosci., 18, 251, 10.1523/JNEUROSCI.18-01-00251.1998 Carson, 1997, Translocation of myelin basic protein mRNA in oligodendrocytes requires microtubules and kinesin, Cell. Motil. Cytoskeleton, 38, 318, 10.1002/(SICI)1097-0169(1997)38:4<318::AID-CM2>3.0.CO;2-# Chartrand, 2001, RNP localization and transport in yeast, Annu. Rev. Cell Dev. Biol., 17, 297, 10.1146/annurev.cellbio.17.1.297 Hovland, 1995, The mRNAs for cyclin A, c-myc and ribosomal proteins L4 and S6 are associated with cytoskeletal-bound polysomes in HepG2 cells, Biochem. J., 310, 193, 10.1042/bj3100193 Chan, 1999, fatvg encodes a new localized RNA that uses a 25-nucleotide element (FVLE1) to localize to the vegetal cortex of Xenopus oocytes, Development, 126, 4943, 10.1242/dev.126.22.4943 Gavis, 1996, Identification of cis-acting sequences that control nanos RNA localization, Dev. Biol., 176, 36, 10.1006/dbio.1996.9996 Oleynikov, 2003, Real-time visualization of ZBP1 association with beta-actin mRNA during transcription and localization, Curr. Biol., 13, 199, 10.1016/S0960-9822(03)00044-7 Mager, 1988, Control of ribosomal protein gene expression, Biochim. Biophys. Acta, 949, 1, 10.1016/0167-4781(88)90048-6 Bowman, 1987, The synthesis of ribosomal proteins S16 and L32 is not autogenously regulated during mouse myoblast differentiation, Mol. Cell. Biol., 7, 4464, 10.1128/MCB.7.12.4464 Pierandrei-Amaldi, 1985, Ribosomal-protein synthesis is not autogenously regulated at the translational level in Xenopus laevis, Dev. Biol., 107, 281, 10.1016/0012-1606(85)90311-2 Marc, 2002, Genome-wide analysis of mRNAs targeted to yeast mitochondria, EMBO Rep., 3, 159, 10.1093/embo-reports/kvf025 Mallardo, 2001, Microtubule-dependent organization of vaccinia virus core-derived early mRNAs into distinct cytoplasmic structures, Mol. Biol. Cell, 12, 3875, 10.1091/mbc.12.12.3875 Tapper, 1983, Isolation of mammalian mitochondrial DNA and RNA and cloning of the mitochondrial genome, Methods Enzymol., 97, 426, 10.1016/0076-6879(83)97153-7 Church, 1984, Genomic sequencing, Proc. Natl. Acad. Sci. U. S. A., 81, 1991, 10.1073/pnas.81.7.1991 Gramolini, 2001, Distinct regions in the 3′ untranslated region are responsible for targeting and stabilizing utrophin transcripts in skeletal muscle cells, J. Cell Biol., 154, 1173, 10.1083/jcb.200101108 Hesketh, 1991, Interaction between mRNA, ribosomes and the cytoskeleton, Biochem. J., 277, 1, 10.1042/bj2770001 Mahon, 1997, The 3′ untranslated region plays a role in the targeting of metallothionein-I mRNA to the perinuclear cytoplasm and cytoskeletal-bound polysomes, Biochim. Biophys. Acta, 1358, 153, 10.1016/S0167-4889(97)00058-X Sundell, 1991, Requirement of microfilaments in sorting of actin messenger RNA, Science, 253, 1275, 10.1126/science.1891715 Bermano, 2001, Perinuclear mRNA localisation by vimentin 3′-untranslated region requires a 100 nucleotide sequence and intermediate filaments, FEBS Lett., 497, 77, 10.1016/S0014-5793(01)02438-3 Lipshitz, 2000, Mechanisms of RNA localization and translational regulation, Curr. Opin. Genet. Dev., 10, 476, 10.1016/S0959-437X(00)00116-7 Bashirullah, 1998, RNA localization in development, Annu. Rev. Biochem., 67, 335, 10.1146/annurev.biochem.67.1.335 Margeot, 2002, In Saccharomyces cerevisiae, ATP2 mRNA sorting to the vicinity of mitochondria is essential for respiratory function, EMBO J., 21, 6893, 10.1093/emboj/cdf690 Veyrune, 1996, A localisation signal in the 3′ untranslated region of c-myc mRNA targets c-myc mRNA and beta-globin reporter sequences to the perinuclear cytoplasm and cytoskeletal-bound polysomes, J. Cell Sci., 109, 1185, 10.1242/jcs.109.6.1185 Dalgleish, 2001, mRNA localization by a 145-nucleotide region of the c-fos 3′-untranslated region. Links to translation but not stability, J. Biol. Chem., 276, 13593, 10.1074/jbc.M001141200 Al-Maghrebi, 2002, The 3′ untranslated region of human vimentin mRNA interacts with protein complexes containing eEF-1gamma and HAX-1, Nucleic Acids Res., 30, 5017, 10.1093/nar/gkf656 Nury, 2005, An eleven nucleotide section of the 3′-untranslated region is required for perinuclear localization of rat metallothionein. 1 mRNA, Biochem. J., 387, 419, 10.1042/BJ20040630 Betley, 2002, A ubiquitous and conserved signal for RNA localization in chordates, Curr. Biol., 12, 1756, 10.1016/S0960-9822(02)01220-4 Shalgi, 2005, A catalog of stability-associated sequence elements in 3′ UTRs of yeast mRNAs, Genome Biol., 6, R86, 10.1186/gb-2005-6-10-r86 Moss, 1994, Free, cytoskeletal-bound and membrane-bound polysomes isolated from MPC-11 and Krebs II ascites cells differ in their complement of poly(A) binding proteins, Mol. Cell. Biochem., 131, 131, 10.1007/BF00925949 Russo, 1997, Different domains cooperate to target the human ribosomal L7a protein to the nucleus and to the nucleoli, J. Biol. Chem., 272, 5229, 10.1074/jbc.272.8.5229 Nobumoto, 1998, Mechanism of mitochondrial import of adenylate kinase isozymes, J. Biochem. (Tokyo), 123, 128, 10.1093/oxfordjournals.jbchem.a021899 Ni, 1999, In vivo mitochondrial import. A comparison of leader sequence charge and structural relationships with the in vitro model resulting in evidence for co-translational import, J. Biol. Chem., 274, 12685, 10.1074/jbc.274.18.12685 Loreni, 1992, Translational regulation of ribosomal protein synthesis in Xenopus cultured cells: mRNA relocation between polysomes and RNP during nutritional shifts, Eur. J. Biochem., 205, 1027, 10.1111/j.1432-1033.1992.tb16870.x Kaspar, 1992, A regulatory cis element and a specific binding factor involved in the mitogenic control of murine ribosomal protein L32 translation, J. Biol. Chem., 267, 508, 10.1016/S0021-9258(18)48524-9 Mitrovich, 2000, Unproductively spliced ribosomal protein mRNAs are natural targets of mRNA surveillance in C. elegans, Genes Dev., 14, 2173, 10.1101/gad.819900 Cuccurese, 2005, Alternative splicing and nonsense-mediated mRNA decay regulate mammalian ribosomal gene expression, Nucleic Acids Res., 33, 5965, 10.1093/nar/gki905