Dreyfuss, 2002, Nature reviews. Molecular cell biology, 3, 195, 10.1038/nrm760
Keene, 2002, Molecular cell, 9, 1161, 10.1016/S1097-2765(02)00559-2
Smith, 2000, Trends in biochemical sciences, 25, 381, 10.1016/S0968-0004(00)01604-2
2004, Human Molecular Genetics, 13, 509, 10.1093/hmg/ddh051
Sureau, 2001, The EMBO Journal, 20, 1785, 10.1093/emboj/20.7.1785
Boutz, 2007, Genes & Development, 21, 1636, 10.1101/gad.1558107
Selbach, 2008, Nature; Physical Science (London), 455, 58, 10.1038/nature07228
Baek, 2008, Nature; Physical Science (London), 455, 64, 10.1038/nature07242
Cai, 2008, Nature; Physical Science (London), 455, 485, 10.1038/nature07292
Krol, 2010, Cell, 141, 618, 10.1016/j.cell.2010.03.039
Schratt, 2009, Nature reviews. Neuroscience, 10, 842, 10.1038/nrn2763
Mukherjee, 2009, 5, 288, 10.1038/msb.2009.44
2010, Nucleic Acids Research, 38, D211, 10.1093/nar/gkp985
2006, Nucleic Acids Research, 34, 4943, 10.1093/nar/gkl620
Lunde, 2007, Nature reviews. Molecular cell biology, 8, 479, 10.1038/nrm2178
Clery, 2008, Current opinion in structural biology, 18, 290, 10.1016/j.sbi.2008.04.002
Valverde, 2008, FEBS Journal, 275, 2712, 10.1111/j.1742-4658.2008.06411.x
Doyle, 2002, Journal of structural biology, 140, 147, 10.1016/S1047-8477(02)00544-0
Jenkins, 2009, Journal of structural biology, 167, 271, 10.1016/j.jsb.2009.06.007
Klug, 2010, Quarterly reviews of biophysics, 43, 1, 10.1017/S0033583510000089
Wang, 2008, Nature; Physical Science (London), 456, 209, 10.1038/nature07315
Nishikura, 2010, Annual review of biochemistry, 79, 321, 10.1146/annurev-biochem-060208-105251
Han, 2006, Cell, 125, 887, 10.1016/j.cell.2006.03.043
Bernstein, 2001, Nature; Physical Science (London), 409, 363, 10.1038/35053110
Kielkopf, 2001, Cell, 106, 595, 10.1016/S0092-8674(01)00480-9
Selenko, 2003, Molecular cell, 11, 965, 10.1016/S1097-2765(03)00115-1
2008, Nucleic Acids Research, 36, 1390, 10.1093/nar/gkm1168
1999, Human Molecular Genetics, 8, 2515, 10.1093/hmg/8.13.2515
Bartel, 2004, Cell, 116, 281, 10.1016/S0092-8674(04)00045-5
Kawamura, 2008, Nature; Physical Science (London), 453, 793, 10.1038/nature06938
2008, Science, 320, 1077, 10.1126/science.1157396
Tam, 2008, Nature; Physical Science (London), 453, 534, 10.1038/nature06904
2006, Science, 313, 363, 10.1126/science.1130164
Aravin, 2006, Nature; Physical Science (London), 442, 203, 10.1038/nature04916
Girard, 2006, Nature; Physical Science (London), 442, 199, 10.1038/nature04917
Wahl, 2009, Cell, 136, 701, 10.1016/j.cell.2009.02.009
2003, Journal of Biological Chemistry, 278, 695, 10.1074/jbc.R200023200
Werry, 2008, Pharmacology & therapeutics, 119, 7, 10.1016/j.pharmthera.2008.03.012
Chang, 2007, Annual review of biochemistry, 76, 51, 10.1146/annurev.biochem.76.050106.093909
Giorgi, 2007, Cell, 130, 179, 10.1016/j.cell.2007.05.028
Sandberg, 2008, Science, 320, 1643, 10.1126/science.1155390
Michlewski, 2008, Molecular cell, 30, 179, 10.1016/j.molcel.2008.03.013
Sanford, 2004, Genes & Development, 18, 755, 10.1101/gad.286404
Fabian, 2010, Annual review of biochemistry, 79, 351, 10.1146/annurev-biochem-060308-103103
2007, Science, 318, 1931, 10.1126/science.1149460
Orom, 2008, Molecular cell, 30, 460, 10.1016/j.molcel.2008.05.001
Henke, 2008, The EMBO Journal, 27, 3300, 10.1038/emboj.2008.244
Vasudevan, 2007, Cell, 128, 1105, 10.1016/j.cell.2007.01.038
Vasudevan, 2008, Cell cycle (Georgetown, Tex.), 7, 1545, 10.4161/cc.7.11.6018
Chen, 1995, Trends in biochemical sciences, 20, 465, 10.1016/S0968-0004(00)89102-1
2005, Nucleic Acids Research, 33, 7138, 10.1093/nar/gki1012
2009, Genes & Development, 23, 1743, 10.1101/gad.1812509
Jing, 2005, Cell, 120, 623, 10.1016/j.cell.2004.12.038
Kedde, 2010, Nature Cell Biology, 12, 1014, 10.1038/ncb2105
Kedde, 2007, Cell, 131, 1273, 10.1016/j.cell.2007.11.034
Buchan, 2009, Molecular cell, 36, 932, 10.1016/j.molcel.2009.11.020
De Leeuw, 2007, Experimental cell research, 313, 4130, 10.1016/j.yexcr.2007.09.017
Monshausen, 2001, Journal of neurochemistry, 76, 155, 10.1046/j.1471-4159.2001.00061.x
Caceres, 1998, Genes & Development, 12, 55, 10.1101/gad.12.1.55
Misteli, 1997, Nature; Physical Science (London), 387, 523, 10.1038/387523a0
1998, The Journal of Cell Biology, 143, 297, 10.1083/jcb.143.2.297
Rueter, 1999, Nature; Physical Science (London), 399, 75, 10.1038/19992
Lareau, 2007, Nature; Physical Science (London), 446, 926, 10.1038/nature05676
2010, Genes & Development, 24, 653, 10.1101/gad.1894310
Wollerton, 2004, Molecular cell, 13, 91, 10.1016/S1097-2765(03)00502-1
Ashiya, 1997, RNA, 3, 996
Makeyev, 2007, Molecular cell, 27, 435, 10.1016/j.molcel.2007.07.015
Boutz, 2007, Genes & Development, 21, 71, 10.1101/gad.1500707
2008, Carcinogenesis, 29, 2073, 10.1093/carcin/bgn187
Grimson, 2007, Molecular cell, 27, 91, 10.1016/j.molcel.2007.06.017
2009, Genome Research, 19, 2009, 10.1101/gr.091181.109
Bhattacharyya, 2006, Cell, 125, 1111, 10.1016/j.cell.2006.04.031
2004, Journal of Biological Chemistry, 279, 32393, 10.1074/jbc.M402059200
1998, 150, 723, 10.1093/genetics/150.2.723
2007, Molecular and Cellular Biology, 27, 6265, 10.1128/MCB.00500-07
Keene, 2007, Nature reviews. Genetics, 8, 533, 10.1038/nrg2111
Garner, 1981, Nucleic Acids Research, 9, 3047, 10.1093/nar/9.13.3047
Fried, 1981, Nucleic Acids Research, 9, 6505, 10.1093/nar/9.23.6505
Tuerk, 1990, Science, 249, 505, 10.1126/science.2200121
Ray, 2009, Nature biotechnology, 27, 667, 10.1038/nbt.1550
Gygi, 1999, Molecular and Cellular Biology, 19, 1720, 10.1128/MCB.19.3.1720
2004, PNAS, 101, 2987, 10.1073/pnas.0306453101
Keene, 2006, 1, 302, 10.1038/nprot.2006.47
Baroni, 2008, Methods in molecular biology (Clifton, N.J.), 419, 93, 10.1007/978-1-59745-033-1_6
Calaluce, 2010, BMC cancer [electronic resource], 10, 126, 10.1186/1471-2407-10-126
2009, Nucleic Acids Research, 37, 204, 10.1093/nar/gkn929
Wagenmakers, 1980, FEBS Journal, 112, 323, 10.1111/j.1432-1033.1980.tb07207.x
Ule, 2003, Science, 302, 1212, 10.1126/science.1090095
Ule, 2005, Methods (San Diego, Calif.), 37, 376, 10.1016/j.ymeth.2005.07.018
Licatalosi, 2008, Nature; Physical Science (London), 456, 464, 10.1038/nature07488
Chi, 2009, Nature; Physical Science (London), 460, 479, 10.1038/nature08170
Ule, 2005, Nature genetics, 37, 844, 10.1038/ng1610
Hafner, 2010, Cell, 141, 129, 10.1016/j.cell.2010.03.009
Melvin, 1978, FEBS Journal, 92, 373, 10.1111/j.1432-1033.1978.tb12756.x
Konig, 2010, Nature structural & molecular biology, 17, 909, 10.1038/nsmb.1838
Sanford, 2008, 3, e3369, 10.1371/journal.pone.0003369
Bohnsack, 2009, Molecular cell, 36, 583, 10.1016/j.molcel.2009.09.039
Donis-Keller, 1977, Nucleic Acids Research, 4, 2527, 10.1093/nar/4.8.2527
Raines, 1998, Chemical Reviews, 98, 1045, 10.1021/cr960427h
Cuatrecasas, 1967, Journal of Biological Chemistry, 242, 1541, 10.1016/S0021-9258(18)96126-0
Noah, 2000, Nucleic Acids Research, 28, 3785, 10.1093/nar/28.19.3785
2007, BMC bioinformatics [electronic resource], 8, S4
Bailey, 1994, Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, 2, 28
Siddharthan, 2005, 1, e67, 10.1371/journal.pcbi.0010067
Siddharthan, 2007, Methods in molecular biology (Clifton, N.J.), 395, 381, 10.1007/978-1-59745-514-5_24
Ule, 2006, Nature; Physical Science (London), 444, 580, 10.1038/nature05304
Frith, 2008, 4, e1000071, 10.1371/journal.pcbi.1000071
Tafer, 2008, Nature biotechnology, 26, 578, 10.1038/nbt1404
2010, RNA, 16, 1096, 10.1261/rna.2017210
2006, Nucleic Acids Research, 34, e117, 10.1093/nar/gkl544
Lopez de Silanes, 2005, Molecular and Cellular Biology, 25, 9520, 10.1128/MCB.25.21.9520-9531.2005
2008, PNAS, 105, 14885, 10.1073/pnas.0803169105
Leontis, 2003, Current opinion in structural biology, 13, 300, 10.1016/S0959-440X(03)00076-9
2010, Bioinformatics, 26, 61, 10.1093/bioinformatics/btp627
Zheng, 2007, FEBS Journal, 274, 6378, 10.1111/j.1742-4658.2007.06155.x
Barash, 2010, Nature; Physical Science (London), 465, 53, 10.1038/nature09000
Anantharaman, 2004, BMC genomics [electronic resource], 5, 45, 10.1186/1471-2164-5-45
2010, Journal of Biological Chemistry, 285, 14701, 10.1074/jbc.M110.104711
Tian, 2004, Nature reviews. Molecular cell biology, 5, 1013, 10.1038/nrm1528
Nagai, 1990, Nature; Physical Science (London), 348, 515, 10.1038/348515a0
Grishin, 2001, Nucleic Acids Research, 29, 638, 10.1093/nar/29.3.638
Siomi, 1993, Nucleic Acids Research, 21, 1193, 10.1093/nar/21.5.1193
2005, Journal of Biological Chemistry, 280, 38823, 10.1074/jbc.M508183200
Ghisolfi, 1992, Journal of Biological Chemistry, 267, 2955, 10.1016/S0021-9258(19)50679-2
Kiledjian, 1992, The EMBO Journal, 11, 2655, 10.1002/j.1460-2075.1992.tb05331.x
Darnell, 2001, Cell, 107, 489, 10.1016/S0092-8674(01)00566-9
Wang, 2001, Molecular cell, 7, 855, 10.1016/S1097-2765(01)00229-5
Pavletich, 1991, Science, 252, 809, 10.1126/science.2028256
Lee, 1989, Science, 245, 635, 10.1126/science.2503871
Parraga, 1988, Science, 241, 1489, 10.1126/science.3047872
Brayer, 2008, Cell biochemistry and biophysics, 51, 9, 10.1007/s12013-008-9007-6
Miller, 1985, The EMBO Journal, 4, 1609, 10.1002/j.1460-2075.1985.tb03825.x
Lu, 2003, Nature; Physical Science (London), 426, 96, 10.1038/nature02088
Hall, 2005, Current opinion in structural biology, 15, 367, 10.1016/j.sbi.2005.04.004
Bycroft, 1995, The EMBO Journal, 14, 3563, 10.1002/j.1460-2075.1995.tb07362.x
Kharrat, 1995, The EMBO Journal, 14, 3572, 10.1002/j.1460-2075.1995.tb07363.x
Chang, 2005, FEBS Journal, 272, 2109, 10.1111/j.1742-4658.2005.04652.x
