Nuclear m 6 A Reader YTHDC1 Regulates mRNA Splicing
Tài liệu tham khảo
Alarcón, 2015, HNRNPA2B1 is a mediator of m6A-dependent nuclear RNA processing events, Cell, 162, 1299, 10.1016/j.cell.2015.08.011
Alarcón, 2015, N6-methyladenosine marks primary microRNAs for processing, Nature, 519, 482, 10.1038/nature14281
Änkö, 2012, The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes, Genome Biol., 13, R17, 10.1186/gb-2012-13-3-r17
Batista, 2014, m6A RNA modification controls cell fate transition in mammalian embryonic stem cells, Cell Stem Cell, 15, 707, 10.1016/j.stem.2014.09.019
Bokar, 1997, Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase, RNA, 3, 1233
Bradley, 2015, SR proteins control a complex network of RNA-processing events, RNA, 21, 75, 10.1261/rna.043893.113
Bregman, 1994, Cytostellin distributes to nuclear regions enriched with splicing factors, J. Cell Sci., 107, 387, 10.1242/jcs.107.3.387
Buratti, 2007, SR protein-mediated inhibition of CFTR exon 9 inclusion: molecular characterization of the intronic splicing silencer, Nucleic Acids Res., 35, 4359, 10.1093/nar/gkm444
Cáceres, 1994, Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors, Science, 265, 1706, 10.1126/science.8085156
Cantara, 2011, The RNA modification database, RNAMDB: 2011 update, Nucleic Acids Res., 39, D195, 10.1093/nar/gkq1028
Chen, 2015, m6A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency, Cell Stem Cell, 16, 289, 10.1016/j.stem.2015.01.016
Corcoran, 2011, PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data, Genome Biol., 12, R79, 10.1186/gb-2011-12-8-r79
Dominissini, 2012, Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq, Nature, 485, 201, 10.1038/nature11112
Fu, 2014, Context-dependent control of alternative splicing by RNA-binding proteins, Nat. Rev. Genet., 15, 689, 10.1038/nrg3778
Fustin, 2013, RNA-methylation-dependent RNA processing controls the speed of the circadian clock, Cell, 155, 793, 10.1016/j.cell.2013.10.026
Geula, 2015, Stem cells. m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation, Science, 347, 1002, 10.1126/science.1261417
Hafner, 2010, Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP, Cell, 141, 129, 10.1016/j.cell.2010.03.009
Han, 2011, SR proteins induce alternative exon skipping through their activities on the flanking constitutive exons, Mol. Cell. Biol., 31, 793, 10.1128/MCB.01117-10
Hartmann, 1999, The interaction and colocalization of Sam68 with the splicing-associated factor YT521-B in nuclear dots is regulated by the Src family kinase p59fyn, Mol. Biol. Cell, 10, 3909, 10.1091/mbc.10.11.3909
Huelga, 2012, Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins, Cell Rep., 1, 167, 10.1016/j.celrep.2012.02.001
Ibrahim, 2005, Serine/arginine-rich protein-dependent suppression of exon skipping by exonic splicing enhancers, Proc. Natl. Acad. Sci. USA, 102, 5002, 10.1073/pnas.0500543102
Imai, 1998, Cloning of a gene, YT521, for a novel RNA splicing-related protein induced by hypoxia/reoxygenation, Brain Res. Mol. Brain Res., 53, 33, 10.1016/S0169-328X(97)00262-3
Jia, 2011, N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO, Nat. Chem. Biol., 7, 885, 10.1038/nchembio.687
Kishore, 2008, Rapid generation of splicing reporters with pSpliceExpress, Gene, 427, 104, 10.1016/j.gene.2008.09.021
Li, 2009, Fast and accurate short read alignment with Burrows-Wheeler transform, Bioinformatics, 25, 1754, 10.1093/bioinformatics/btp324
Liu, 2014, A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation, Nat. Chem. Biol., 10, 93, 10.1038/nchembio.1432
Liu, 2015, N6-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions, Nature, 518, 560, 10.1038/nature14234
Machnicka, 2013, MODOMICS: a database of RNA modification pathways--2013 update, Nucleic Acids Res., 41, D262, 10.1093/nar/gks1007
Melé, 2015, Human genomics. The human transcriptome across tissues and individuals, Science, 348, 660, 10.1126/science.aaa0355
Meyer, 2012, Comprehensive analysis of mRNA methylation reveals enrichment in 3′ UTRs and near stop codons, Cell, 149, 1635, 10.1016/j.cell.2012.05.003
Meyer, 2015, 5′ UTR m6A promotes cap-independent translation, Cell, 163, 999, 10.1016/j.cell.2015.10.012
Nayler, 2000, The ER repeat protein YT521-B localizes to a novel subnuclear compartment, J. Cell Biol., 150, 949, 10.1083/jcb.150.5.949
Nilsen, 2014, Molecular biology. Internal mRNA methylation finally finds functions, Science, 343, 1207, 10.1126/science.1249340
Nilsen, 2010, Expansion of the eukaryotic proteome by alternative splicing, Nature, 463, 457, 10.1038/nature08909
Pandit, 2013, Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing, Mol. Cell, 50, 223, 10.1016/j.molcel.2013.03.001
Ping, 2014, Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase, Cell Res., 24, 177, 10.1038/cr.2014.3
Sammeth, 2008, A general definition and nomenclature for alternative splicing events, PLoS Comput. Biol., 4, e1000147, 10.1371/journal.pcbi.1000147
Schwartz, 2013, High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis, Cell, 155, 1409, 10.1016/j.cell.2013.10.047
Schwartz, 2014, Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5′ sites, Cell Rep., 8, 284, 10.1016/j.celrep.2014.05.048
Shepard, 2009, The SR protein family, Genome Biol., 10, 242, 10.1186/gb-2009-10-10-242
Wang, 2014, N6-methyladenosine-dependent regulation of messenger RNA stability, Nature, 505, 117, 10.1038/nature12730
Wang, 2014, N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells, Nat. Cell Biol., 16, 191, 10.1038/ncb2902
Wang, 2015, N6-methyladenosine modulates messenger RNA translation efficiency, Cell, 161, 1388, 10.1016/j.cell.2015.05.014
Xu, 2014, Structural basis for selective binding of m6A RNA by the YTHDC1 YTH domain, Nat. Chem. Biol., 10, 927, 10.1038/nchembio.1654
Zhao, 2014, FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis, Cell Res., 24, 1403, 10.1038/cr.2014.151
Zheng, 2013, ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility, Mol. Cell, 49, 18, 10.1016/j.molcel.2012.10.015
Zhou, 2014, Transcriptome analysis of alternative splicing events regulated by SRSF10 reveals position-dependent splicing modulation, Nucleic Acids Res., 42, 4019, 10.1093/nar/gkt1387
Zhou, 2015, Dynamic m6A mRNA methylation directs translational control of heat shock response, Nature, 526, 591, 10.1038/nature15377