Molecular characterization of avian polyomavirus isolated from psittacine birds based on the whole genome sequence analysis

Bernier, 1981, A generalized inclusion body disease in the budgerigar (Melopsittacus undulatus) caused by a papovavirus-like agent, Avian Dis., 25, 1083, 10.2307/1590087 Bozeman, 1981, Characterization of a papovavirus isolated from fledgling budgerigars, Avian Dis., 25, 972, 10.2307/1590072 Chahota, 2006, Genetic diversity and epizootiology of Chlamydophila psittaci prevalent among the captive and feral avian species based on VD2 region of ompA gene, Microbiol. Immunol., 50, 663, 10.1111/j.1348-0421.2006.tb03839.x Daniels, 2007, A very late viral protein triggers the lytic release of SV40, PLoS Pathog 3, e98, 928 Davis, 1981, A viral disease of fledgling budgerigars, Avian Dis., 25, 179, 10.2307/1589839 Enders, 1997, Fatal avian polyomavirus infection during quarantine in adult wild-caught red-faced lovebirds (Agapornis pullaria), Avian Dis., 41, 496, 10.2307/1592213 Ewing, 1998, Base-calling of automated sequencer traces using phred. II. Error probabilities, Genome Res., 8, 186, 10.1101/gr.8.3.186 Ewing, 1998, Base-calling of automated sequencer traces using phred. I. Accuracy assessment, Genome Res., 8, 175, 10.1101/gr.8.3.175 Felsenstein, 1985, Confidence limits in phylogenies: an approach using the bootstrap, Evolution, 39, 783, 10.2307/2408678 Galtier, 1996, SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny, Comput. Appl. Biosci., 12, 543 Hirai, 1984, Isolation of a papovavirus-like agent from young budgerigars with feather abnormalities, Nippon Juigaku Zasshi, 46, 577, 10.1292/jvms1939.46.577 Hsu, 2006, Detection and sequence analysis of avian polyomavirus and psittacine beak and feather disease virus from psittacine birds in Taiwan, Avian Dis., 50, 348, 10.1637/7485-121105R.1 Johne, 2000, Agnoprotein 1a and agnoprotein 1b of avian polyomavirus are apoptotic inducers, J. Gen. Virol., 81, 1183, 10.1099/0022-1317-81-5-1183 Johne, 1998, Avian polymavirus in wild birds: genome analysis of isolates from Falconiformes and Psittaciformes, Arch. Virol., 143, 1501, 10.1007/s007050050393 Johne, 2001, Avian polyomavirus agnoprotein 1a is incorporated into the virus particle as a fourth structural protein, VP4, J. Gen. Virol., 82, 909, 10.1099/0022-1317-82-4-909 Johne, 2007, Polyomaviruses of birds: etiologic agents of inflammatory diseases in a tumor virus family, J. Virol., 81, 11554, 10.1128/JVI.01178-07 Johne, 2007, Avian polyomavirus mutants with deletions in the VP4-encoding region show deficiencies in capsid assembly and virus release, and have reduced infectivity in chicken, J. Gen. Virol., 88, 823, 10.1099/vir.0.82506-0 Kaleta, 1984, Untersuchungen zur Virusätiologie einer mit Hepatitis und Befiederungsstörungen einhergehenden Krankheit bei Wellensittichen (Melopsittacus undulatus), Zbl. Vet. Med. B, 31, 219, 10.1111/j.1439-0450.1984.tb01297.x Khan, 2000, Development of a blocking enzyme-linked immunosorbent assay for the detection of avian polyomavirus-specific antibodies, J. Virol. Methods, 89, 39, 10.1016/S0166-0934(00)00197-X Krautwald, 1989, Polyomavirus infection in budgerigars (Melopsittacus undulatus): clinical and aetiological studies, Zentralbl. Veterinarmed. B, 36, 459 Literak, 2006, An outbreak of the polyomavirus infection in budgerigars and cockatiels in Slovakia, including a genome analysis of an avian polyomavirus isolate, Avian Dis., 50, 120, 10.1637/7395-061605R.1 Liu, 2000, Agnoprotein-1a of avian polyomavirus budgerigar fledgling disease virus: identification of phosphorylation sites and functional importance in the virus life-cycle, J. Gen. Virol., 81, 359, 10.1099/0022-1317-81-2-359 Luo, 1994, Expression and DNA binding of budgerigar fledgling disease virus large T antigen, J. Gen. Virol., 75, 1267, 10.1099/0022-1317-75-6-1267 Luo, 1995, Early and late pre-mRNA processing of budgerigar fledgling disease virus 1: identification of viral RNA 5′ and 3′ ends and internal splice junctions, J. Gen. Virol., 76, 161, 10.1099/0022-1317-76-1-161 Ogawa, 2006, A survey of avian polyomavirus (APV) infection in imported and domestic bred psittacine birds in Japan, J. Vet. Med. Sci., 68, 743, 10.1292/jvms.68.743 Ogawa, 2005, Duplex shuttle PCR for differential diagnosis of budgerigar fledgling disease and psittacine beak and feather disease, Microbiol. Immunol., 49, 227, 10.1111/j.1348-0421.2005.tb03724.x Pass, 1985, A papova-like virus infection of lovebirds (Agapornis sp.), Aust. Vet. J., 62, 318, 10.1111/j.1751-0813.1985.tb14916.x Perez-Losada, 2006, Comparing phylogenetic codivergence between polyomaviruses and their hosts, J. Virol., 80, 5663, 10.1128/JVI.00056-06 Phalen, 1999, Genetic diversity in twenty variants of the avian polyomavirus, Avian Dis., 43, 207, 10.2307/1592610 Rott, 1988, The genome of budgerigar fledgling disease virus, an avian polyomavirus, Virology, 165, 74, 10.1016/0042-6822(88)90660-5 Saitou, 1987, The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406 Stern, 2005, The chick; a great model system becomes even greater, Dev. Cell, 8, 9, 10.1016/S1534-5807(04)00425-3 Stoll, 1994, Host restriction in the productive cycle of avian polyomavirus budgerigar fledgling disease virus type 3 depends on a single amino acid change in the common region of structural proteins VP2/VP3, J. Gen. Virol., 75, 2261, 10.1099/0022-1317-75-9-2261 Stoll, 1993, Molecular and biological characteristics of avian polyomaviruses: isolates from different species of birds indicate that avian polyomaviruses form a distinct subgenus within the polyomavirus genus, J. Gen. Virol., 74, 229, 10.1099/0022-1317-74-2-229 Tomaszewski, 2001, Detection and heterogeneity of herpesviruses causing Pacheco's disease in parrots, J. Clin. Microbiol., 39, 533, 10.1128/JCM.39.2.533-538.2001