The DEAD-Box Protein Dbp5 Controls mRNA Export by Triggering Specific RNA:Protein Remodeling Events
Tài liệu tham khảo
Ait-Haddou, 2003, Brownian ratchet models of molecular motors, Cell Biochem. Biophys., 38, 191, 10.1385/CBB:38:2:191
Alcázar-Román, 2006, Inositol hexakisphosphate and Gle1 activate the DEAD-box protein Dbp5 for nuclear mRNA export, Nat. Cell Biol., 8, 711, 10.1038/ncb1427
Anderson, 1993, NAB2: a yeast nuclear polyadenylated RNA-binding protein essential for cell viability, Mol. Cell. Biol., 13, 2730, 10.1128/MCB.13.5.2730
Bowers, 2006, Discriminatory RNP remodeling by the DEAD-box protein DED1, RNA, 12, 903, 10.1261/rna.2323406
Chen, 2001, Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor, Mol. Cell, 7, 227, 10.1016/S1097-2765(01)00170-8
Cole, 2006, Transport of messenger RNA from the nucleus to the cytoplasm, Curr. Opin. Cell Biol., 18, 299, 10.1016/j.ceb.2006.04.006
Cordin, 2006, The DEAD-box protein family of RNA helicases, Gene, 367, 17, 10.1016/j.gene.2005.10.019
Daneholt, 2001, Assembly and transport of a premessenger RNP particle, Proc. Natl. Acad. Sci. USA, 98, 7012, 10.1073/pnas.111145498
Deardorff, 1997, Differential effects of aromatic and charged residue substitutions in the RNA binding domains of the yeast poly(A)-binding protein, J. Mol. Biol., 269, 67, 10.1006/jmbi.1997.1013
Dunn, 2005, Yeast poly(A)-binding protein, Pab1, and PAN, a poly(A) nuclease complex recruited by Pab1, connect mRNA biogenesis to export, Genes Dev., 19, 90, 10.1101/gad.1267005
Fairman, 2004, Protein displacement by DExH/D “RNA helicases” without duplex unwinding, Science, 304, 730, 10.1126/science.1095596
Green, 2002, Nab2p is required for poly(A) RNA export in Saccharomyces cerevisiae and is regulated by arginine methylation via Hmt1p, J. Biol. Chem., 277, 7752, 10.1074/jbc.M110053200
Gross, 2007, The DEAD-box RNA helicase Dbp5 functions in translation termination, Science, 315, 646, 10.1126/science.1134641
Gruter, 1998, TAP, the human homolog of Mex67p, mediates CTE-dependent RNA export from the nucleus, Mol. Cell, 1, 649, 10.1016/S1097-2765(00)80065-9
Hector, 2002, Dual requirement for yeast hnRNP Nab2p in mRNA poly(A) tail length control and nuclear export, EMBO J., 21, 1800, 10.1093/emboj/21.7.1800
Henn, 2002, The RNA helicase DbpA exhibits a markedly different conformation in the ADP-bound state when compared with the ATP- or RNA-bound states, J. Biol. Chem., 277, 46559, 10.1074/jbc.M207438200
Hieronymus, 2004, A systems view of mRNP biology, Genes Dev., 18, 2845, 10.1101/gad.1256904
Hodge, 1999, Rat8p/Dbp5p is a shuttling transport factor that interacts with Rat7p/Nup159p and Gle1p and suppresses the mRNA export defect of xpo1–1 cells, EMBO J., 18, 5778, 10.1093/emboj/18.20.5778
Iovine, 1995, The GLFG repetitive region of the nucleoporin Nup116p interacts with Kap95p, an essential yeast nuclear import factor, J. Cell Biol., 131, 1699, 10.1083/jcb.131.6.1699
Jankowsky, 2007, RNA helicases - one fold for many functions, Curr. Opin. Struct. Biol., 17, 316, 10.1016/j.sbi.2007.05.007
Jankowsky, 2001, Active disruption of an RNA-protein interactionby a DExH/D RNA helicase, Science, 291, 121, 10.1126/science.291.5501.121
Kapust, 2001, Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency, Protein Eng., 14, 993, 10.1093/protein/14.12.993
Katahira, 1999, The Mex67p-mediated nuclear mRNA export pathway is conserved from yeast to human, EMBO J., 18, 2593, 10.1093/emboj/18.9.2593
Kelly, 2007, Recognition of polyadenosine RNA by zinc finger proteins, Proc. Natl. Acad. Sci. USA, 104, 12306, 10.1073/pnas.0701244104
Kendirgi, 2003, An essential role for hGle1 nucleocytoplasmic shuttling in mRNA export, J. Cell Biol., 160, 1029, 10.1083/jcb.200211081
Kistler, 2001, Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase, Genes Dev., 15, 42, 10.1101/gad.851301
Kohler, 2007, Exporting RNA from the nucleus to the cytoplasm, Nat. Rev. Mol. Cell Biol., 8, 761, 10.1038/nrm2255
Lee, 1999, Kap104p-mediated nuclear import. Nuclear localization signals in mRNA-binding proteins and the role of Ran and Rna, J. Biol. Chem., 274, 29031, 10.1074/jbc.274.41.29031
Lund, 2005, The DEAD-box protein Dbp5p is required to dissociate Mex67p from exported mRNPs at the nuclear rim, Mol. Cell, 20, 645, 10.1016/j.molcel.2005.10.005
Marfatia, 2003, Domain analysis of the Saccharomyces cerevisiae heterogeneous nuclear ribonucleoprotein, Nab2p. Dissecting the requirements for Nab2p-facilitated poly(A) RNA export, J. Biol. Chem., 278, 6731, 10.1074/jbc.M207571200
Miller, 2004, Cytoplasmic inositol hexakisphosphate production Is sufficient for mediating the Gle1-mRNA export pathway, J. Biol. Chem., 279, 51022, 10.1074/jbc.M409394200
Murphy, 1996, An RNA-export mediator with an essential nuclear export signal, Nature, 383, 357, 10.1038/383357a0
Pinol-Roma, 1992, Shuttling of pre-mRNA binding proteins between nucleus and cytoplasm, Nature, 355, 730, 10.1038/355730a0
Rout, 2000, The yeast nuclear pore complex: composition, architecture, and transport mechanism, J. Cell Biol., 148, 635, 10.1083/jcb.148.4.635
Schmitt, 1999, Dbp5, a DEAD-box protein required for mRNA export, is recruited to the cytoplasmic fibrils of nuclear pore complex via a conserved interaction with CAN/Nup159p, EMBO J., 18, 4332, 10.1093/emboj/18.15.4332
Segref, 1997, Mex67p, a novel factor for nuclear mRNA export, binds to both poly(A)+ RNA and nuclear pores, EMBO J., 16, 3256, 10.1093/emboj/16.11.3256
Snay-Hodge, 1998, Dbp5p/Rat8p is a yeast nuclear pore-associated DEAD-box protein essential for RNA export, EMBO J., 17, 2663, 10.1093/emboj/17.9.2663
Solem, 2006, A DEAD protein that activates intron self-splicing without unwinding RNA, Mol. Cell, 24, 611, 10.1016/j.molcel.2006.10.032
Stewart, 2007, Molecular mechanism of the nuclear protein import cycle, Nat. Rev. Mol. Cell Biol., 8, 195, 10.1038/nrm2114
Strahm, 1999, The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr 255p, EMBO J., 18, 5761, 10.1093/emboj/18.20.5761
Strasser, 2000, Binding of the Mex67p/Mtr2p heterodimer to FXFG, GLFG, and FG repeat nucleoporins is essential for nuclear mRNA export, J. Cell Biol., 150, 695, 10.1083/jcb.150.4.695
Strawn, 2001, The GLFG regions of Nup116p and Nup100p serve as binding sites for both Kap95p and Mex67p at the nuclear pore complex, J. Biol. Chem., 276, 6445, 10.1074/jbc.M008311200
Strawn, 2004, Minimal nuclear pore complexes define FG repeat domains essential for transport, Nat. Cell Biol., 6, 197, 10.1038/ncb1097
Suntharalingam, 2004, Nuclear Export of the Yeast mRNA-binding Protein Nab2 Is Linked to a Direct Interaction with Gfd1 and to Gle1 Function, J. Biol. Chem., 279, 35384, 10.1074/jbc.M402044200
Terry, 2007, Nuclear mRNA export requires specific FG nucleoporins for translocation through the nuclear pore complex, J. Cell Biol., 178, 1121, 10.1083/jcb.200704174
Tran, 2006, Dynamic nuclear pore complexes: life on the edge, Cell, 125, 1041, 10.1016/j.cell.2006.05.027
Tseng, 1998, Dbp5p, a cytosolic RNA helicase, is required for poly(A)+ RNA export, EMBO J., 17, 2651, 10.1093/emboj/17.9.2651
Weirich, 2004, The N-terminal domain of Nup159 forms a b-propeller that functions in mRNA export by tethering the helicase Dbp5 to the nuclear pore, Mol. Cell, 16, 749, 10.1016/j.molcel.2004.10.032
Weirich, 2006, Activation of the DExD/H-box protein Dbp5 by the nuclear-pore protein Gle1 and its coactivator InsP6 is required for mRNA export, Nat. Cell Biol., 8, 668, 10.1038/ncb1424
Windgassen, 2004, Yeast shuttling SR proteins Npl3p, Gbp2p, and Hrb1p are part of the translating mRNPs, and Npl3p can function as a translational repressor, Mol. Cell. Biol., 24, 10479, 10.1128/MCB.24.23.10479-10491.2004
Wong, 1993, A double-filter method for nitrocellulose-filter binding: application to protein-nucleic acid interactions, Proc. Natl. Acad. Sci. USA, 90, 5428, 10.1073/pnas.90.12.5428
Zhao, 2002, The mRNA export factor Dbp5 is associated with Balbiani ring mRNP from gene to cytoplasm, EMBO J., 21, 1177, 10.1093/emboj/21.5.1177