Models for pattern formation in somitogenesis: a marriage of cellular and molecular biology

Schnell, 2000, Spatiotemporal pattern formation in early development: a review of primitive streak formation and somitogenesis, 11 Stickney, 2000, Somite development in zebrafish, Dev. Dyn., 219, 287, 10.1002/1097-0177(2000)9999:9999<::AID-DVDY1065>3.0.CO;2-A Stockdale, 2000, Molecular and cellular biology of avian somite development, Dev. Dyn., 219, 304, 10.1002/1097-0177(2000)9999:9999<::AID-DVDY1057>3.0.CO;2-5 Collier, 2000, A cell cycle model for somitogenesis: mathematical formulation and numerical simulations, J. Theor. Biol., 207, 305, 10.1006/jtbi.2000.2172 Keynes, 1988, Mechanisms of vertebrate segmentation, Development, 103, 413, 10.1242/dev.103.3.413 Gossler, 1998, Somitogenesis, Curr. Top. Dev. Biol., 38, 225, 10.1016/S0070-2153(08)60248-3 Duband, 1987, Spatial and temporal distribution of the adherens-junction-associated adhesion molecule A-CAM during avian embryogenesis, Development, 103, 325, 10.1242/dev.103.2.325 Probstmeier, 1994, Expression of the neural cell adhesion molecule and polysialic acid during early mouse embryogenesis, J. Neurosci. Res., 37, 324, 10.1002/jnr.490370305 Kimura, 1995, Cadherin-11 expressed in association with mesenchymal morphogenesis in the head, somite, and limb bud of early mouse embryos, Dev. Biol., 169, 347, 10.1006/dbio.1995.1149 Radice, 1997, Developmental defects in mouse embryos lacking n-cadherin, Dev. Biol., 181, 64, 10.1006/dbio.1996.8443 Linask, 1998, N-cadherin/catenin-mediated morphoregulation of somite formation, Dev. Biol., 202, 85, 10.1006/dbio.1998.9025 Tomasiewicz, 1993, Genetic deletion of a neural cell adhesion molecule variant (N-CAM-180) produces distinct defects in the central nervous system, Neuron, 11, 1163, 10.1016/0896-6273(93)90228-J Horikawa, 1999, Adhesive subdivisions intrinsic to the epithelial somites, Dev. Biol., 215, 182, 10.1006/dbio.1999.9463 Richardson, 1998, Somite number and vertebrate evolution, Development, 125, 151, 10.1242/dev.125.2.151 Cooke, 1975, Control of somite number during morphogenesis of a vertebrate, xenopus laevis, Nature, 254, 196, 10.1038/254196a0 Veini, 1986, Heat shock effects in chick embryos, 135 Gorodilov, 1992, Rhythmic processes in lower vertebrates embryogenesis and their role for developmental control, Zool. Sci., 9, 1101 Primmett, 1988, Heat shock causes repeated segmental anomalies in the chick embryo, Development, 104, 331, 10.1242/dev.104.2.331 Primmett, 1989, Periodic segmental anomalies induced by heat shock in the chick embryo are associated with the cell cycle, Development, 105, 119, 10.1242/dev.105.1.119 Stern, 1988, A cell lineage analysis of segmentation in the chick embryo, Development, 104S, 231, 10.1242/dev.104.Supplement.231 Stern, 1984, Mitotic activity during somite segmentation in the early chick embryo, Anat. Embryol. (Berl.), 169, 97, 10.1007/BF00300591 Palmeirim, 1997, Avian hairy gene expression identifies a molecular clock linked to vertebrate segmentation and somitogenesis, Cell, 91, 639, 10.1016/S0092-8674(00)80451-1 McGrew, 1998, The lunatic fringe gene is a target of the molecular clock linked to somite segmentation in avian embryos, Curr. Biol., 8, 979, 10.1016/S0960-9822(98)70401-4 del Barco Barrantes, 1999, Interaction between Notch signalling and Lunatic fringe during somite boudary formation in the mouse, Curr. Biol., 9, 470, 10.1016/S0960-9822(99)80212-7 Krumlauf, 1994, Hox genes in vertebrate development, Cell, 78, 191, 10.1016/0092-8674(94)90290-9 Kessel, 1991, Homeotic transformations of murine prevertebrae and concomitant alteration of Hox codes induced by retinoic acid, Cell, 67, 89, 10.1016/0092-8674(91)90574-I Kessel, 1992, Respecification of vertebral identities by retinoic acid, Development, 115, 487, 10.1242/dev.115.2.487 Wilby, 1975, A model for generating the pattern of cartilage skeletal elements in the embryonic chick limb, J. Theor. Biol., 52, 199, 10.1016/0022-5193(75)90051-X Cooke, 1976, A clock and wavefront model for control of the number of repeated structures during animal morphogenesis, J. Theor. Biol., 58, 455, 10.1016/S0022-5193(76)80131-2 Flint, 1978, Control of somite number in normal and amputated mutant mouse embryos: An experimental and a theoretical analysis, J. Embryol. Exp. Morph., 45, 189 Meinhardt, 1982 Polezhaev, 1992, A mathematical model of the mechanism of vertebrate somitic segmentation, J. Theor. Biol., 156, 169, 10.1016/S0022-5193(05)80671-X Schnell, 2000, Clock and induction model for somitogenesis, Dev. Dyn., 217, 415, 10.1002/(SICI)1097-0177(200004)217:4<415::AID-DVDY8>3.0.CO;2-3 Kaern, 2000, Segmentation and somitogenesis derived from phase dynamics in growing oscillatory media, J. Theor. Biol., 207, 473, 10.1006/jtbi.2000.2183 Stern, 1992, Relationships between mesoderm induction and the embryonic axes in chick and frog embryos, Development, 151, 10.1242/dev.116.Supplement.151 Larue, 1996, A role for cadherins in tissue formation, Development, 122, 3185, 10.1242/dev.122.10.3185 Aplin, 1999, Cell adhesion molecules, signal transduction and cell growth, Curr. Opin. Cell Biol., 11, 737, 10.1016/S0955-0674(99)00045-9 Oster, 1983, Mechanical aspects of mesenchymal morphogenesis, J. Embryol. Exp. Morphol., 78, 83 Oster, 1985, A model for chondrogenic condensations in the developing limb. The role of extracellular-matrix and cell tractions, J. Embryol. Exp. Morphol., 89, 93 Murray, 1983, A mechanical model for mesenchymal morphogenesis, J. Math. Biol., 17, 125, 10.1007/BF00276117 Murray, 2000, Pattern formation in integrative biology: a marriage of theory and experiment, C. R. Acad. Sci. Paris, Ser. III, 323, 5, 10.1016/S0764-4469(00)00109-8 Murray, 1993 Müller, 1996, Expression domains of a zebrafish homologue of the drosophila pair-rule gene hairy correspond to primordia of alternating somites, Development, 122, 2071, 10.1242/dev.122.7.2071 King, 1996, How proteolysis drives the cell cycle, Science, 274, 1652, 10.1126/science.274.5293.1652 Pérez-Mongiovi, 1998, A propagated wave of mpf activation accompanies surface contraction at first mitosis in xenopus, J. Cell Sci., 111, 385, 10.1242/jcs.111.3.385 Kusumi, 1998, The mouse pudgy mutation disrupts delta homologue dll3 and initiation of early somite boundaries, Nature Genetics, 19, 274, 10.1038/961 Ju, 2000, Fringe forms a complex with notch, Nature, 405, 191, 10.1038/35012090 Munro, 2000, The Notch signalling regulator Fringe acts in the Golgi apparatus and requires the glycosyltransferase signature motif DxD, Curr. Biol., 10, 813, 10.1016/S0960-9822(00)00578-9 Moloney, 2000, Fringe is a glycosyltransferase that modifies Notch, Nature, 406, 369, 10.1038/35019000 Brückner, 2000, Glycosyltransferase activity of Fringe modulates Notch-Delta interactions, Nature, 406, 411, 10.1038/35019075 Vasiliauskas, 2001, Patterning the embryonic axis: FGF signaling and how the vertebrate embryos measure time, Cell, 106, 133, 10.1016/S0092-8674(01)00442-1 Reifers, 1998, FGF8 is mutated in zebrafish acerebellar (ace) mutants and is required for maintenance of midbrain–hindbrain boundary development and somitogenesis, Development, 125, 2381, 10.1242/dev.125.13.2381 Lun, 1998, A series of no isthmus (noi) alleles of the zebrafish pax2.1 gene reveals multiple signaling events in development of the midbrain-hindbrain boundary, Development, 125, 3049, 10.1242/dev.125.16.3049 Reifers, 2000, Overlapping and distinct functions provided by FGF17, a new zebrafish member of the FGF8/17/18 subgroup of FGFs, Mech. Dev., 99, 39, 10.1016/S0925-4773(00)00475-5 Dubrulle, 2001, FGF signaling controls somite boundary position and regulates segmentation clock control of spatiotemporal hox gene activation, Cell, 106, 219, 10.1016/S0092-8674(01)00437-8 Kieny, 1972, Early regionalization of somite mesoderm as studied by the development of axial skeleton of the chick embryo, Dev. Biol., 28, 142, 10.1016/0012-1606(72)90133-9 Chevallier, 1977, Limb-somite relationship: origin of the limb musculature, J. Embryol. Exp. Morphol., 41, 245 Chevallier, 1978, Limb-somite relationship: effects of removal of somitic mesoderm on the wing musculature, J. Embryol. Exp. Morph., 43, 263 Chevallier, 1979, Role of the somitic mesoderm in the development of the thorax in bird embryos. II. Origin of thoracic and appendicular musculature, J. Embryol. Exp. Morphol., 49, 73 Wachtlet, 1982, Grafting experiments on determination and migratory behaviour of presomitic, somitic and somatopleural cells in avian embryos, Anat. Embryol. (Berlin), 164, 369, 10.1007/BF00315758 Chada, 1986, An embryonic pattern of expression of a human fetal globin gene in transgenic mice, Nature, 319, 685, 10.1038/319685a0 Butler, 1988, Positional signals: Evidence for a possible role in muscle fibre-type patterning of the embryonic avian limb, Development, 102, 763, 10.1242/dev.102.4.763 Meinhardt, 1986, Models of segmentation, 179 Gaunt, 1988, Mouse homeobox gene transcripts occupy different but overlapping domains in embryonic germ layers and organs: a comparison of Hox-3.1 and Hox-1.5, Development, 103, 135, 10.1242/dev.103.1.135 Holland, 1988, Expression of homeo box genes during mouse development: a review, Genes Dev., 2, 773, 10.1101/gad.2.7.773 Summerbell, 1990, Retinoic acid, a developmental signalling molecule, Trends Neurosci., 13, 142, 10.1016/0166-2236(90)90006-V Zákány, 2001, Localized and transient transcription of hox genes suggests a link between patterning and the segmentation clock, Cell, 106, 207, 10.1016/S0092-8674(01)00436-6 Izpisúa-Belmonte, 1992, Homeobox genes and pattern formation in the vertebrate limb, Dev. Biol., 152, 26, 10.1016/0012-1606(92)90153-8 Kimmel, 1984, Analysis of a cell cycle model based on unequal division of metabolic constituents to daughter cells during cytokinesis, J. Theor. Biol., 110, 637, 10.1016/S0022-5193(84)80149-6 Webb, 1987, Random transitions, size control, and inheritance in cell population dynamics, Math. Biosci., 85, 71, 10.1016/0025-5564(87)90100-3 Arino, 1993, Comparison of approaches to modeling of cell population dynamics, SIAM J. Appl. Math., 53, 1480, 10.1137/0153069